Wall clock time and date at job start Tue Mar 31 2020 06:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47237 * 2 1 4 4 C 1.46901 * 111.00478 * 164.02174 * 3 2 1 5 5 C 1.50700 * 109.46918 * 283.62639 * 4 3 2 6 6 H 1.08004 * 120.00231 * 4.18019 * 5 4 3 7 7 C 1.37879 * 119.99807 * 184.17925 * 5 4 3 8 8 N 1.31510 * 119.99993 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00110 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47353 * 89.99663 * 9 7 5 11 11 H 1.48494 * 109.47146 * 210.00183 * 9 7 5 12 12 H 1.48501 * 109.46608 * 329.99917 * 9 7 5 13 13 C 1.46904 * 110.99839 * 287.97824 * 3 2 1 14 14 H 1.08998 * 109.46967 * 48.50848 * 13 3 2 15 15 C 1.52998 * 109.46713 * 288.50969 * 13 3 2 16 16 C 1.52999 * 109.47317 * 168.51295 * 13 3 2 17 17 S 1.81401 * 109.46938 * 296.07956 * 16 13 3 18 18 C 1.76199 * 102.99981 * 179.97438 * 17 16 13 19 19 C 1.38975 * 120.07933 * 359.72820 * 18 17 16 20 20 C 1.38085 * 119.91668 * 179.72263 * 19 18 17 21 21 C 1.38300 * 120.07889 * 0.57273 * 20 19 18 22 22 C 1.50697 * 119.91702 * 179.70056 * 21 20 19 23 23 C 1.38303 * 120.16546 * 359.67996 * 21 20 19 24 24 C 1.38085 * 120.07624 * 0.04471 * 23 21 20 25 25 H 1.08997 * 109.47058 * 60.49796 * 1 2 3 26 26 H 1.09005 * 109.46934 * 180.49872 * 1 2 3 27 27 H 1.09004 * 109.47175 * 300.49208 * 1 2 3 28 28 H 1.09004 * 109.46905 * 119.99435 * 2 1 3 29 29 H 1.08999 * 109.47329 * 239.99428 * 2 1 3 30 30 H 1.09003 * 109.46738 * 43.62500 * 4 3 2 31 31 H 1.08998 * 109.47384 * 163.62498 * 4 3 2 32 32 H 0.97004 * 120.00191 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47280 * 300.00228 * 15 13 3 34 34 H 1.09008 * 109.47338 * 60.00232 * 15 13 3 35 35 H 1.09000 * 109.47120 * 179.97438 * 15 13 3 36 36 H 1.09006 * 109.47051 * 56.07907 * 16 13 3 37 37 H 1.08991 * 109.47319 * 176.08248 * 16 13 3 38 38 H 1.08000 * 120.03812 * 359.97438 * 19 18 17 39 39 H 1.08004 * 119.95568 * 180.27097 * 20 19 18 40 40 H 1.09004 * 109.47774 * 269.97899 * 22 21 20 41 41 H 1.09002 * 109.47571 * 29.98125 * 22 21 20 42 42 H 1.08998 * 109.47541 * 149.97691 * 22 21 20 43 43 H 1.08000 * 119.96029 * 180.02562 * 23 21 20 44 44 H 1.07998 * 120.04025 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4382 1.4419 0.3775 5 6 3.5695 1.2550 1.8671 6 1 2.6949 1.0414 2.4637 7 6 4.8061 1.3567 2.4683 8 7 5.8711 1.6164 1.7418 9 14 4.9690 1.1244 4.3147 10 1 5.2176 -0.3089 4.6132 11 1 6.1040 1.9390 4.8179 12 1 3.7146 1.5584 4.9806 13 6 1.7961 2.0224 -1.3045 14 1 0.7676 1.8499 -1.6216 15 6 2.7549 1.4237 -2.3356 16 6 2.0482 3.5269 -1.1870 17 16 0.8359 4.2561 -0.0515 18 6 1.2771 5.9620 -0.0428 19 6 2.3494 6.4080 -0.8062 20 6 2.6887 7.7465 -0.8013 21 6 1.9703 8.6409 -0.0289 22 6 2.3479 10.0997 -0.0211 23 6 0.9058 8.1998 0.7361 24 6 0.5572 6.8637 0.7318 25 1 -0.3633 0.5061 -0.8944 26 1 -0.3633 -1.0277 0.0089 27 1 -0.3634 0.5215 0.8856 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 3.9832 0.6507 -0.1374 31 1 3.8508 2.4105 0.0951 32 1 6.7411 1.6883 2.1648 33 1 3.7834 1.5961 -2.0185 34 1 2.5753 0.3518 -2.4194 35 1 2.5887 1.8963 -3.3037 36 1 3.0541 3.6979 -0.8033 37 1 1.9503 3.9895 -2.1690 38 1 2.9140 5.7092 -1.4056 39 1 3.5192 8.0945 -1.3977 40 1 3.0759 10.2825 0.7694 41 1 2.7825 10.3678 -0.9842 42 1 1.4587 10.7044 0.1570 43 1 0.3468 8.9012 1.3378 44 1 -0.2738 6.5199 1.3297 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255768607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:32 Heat of formation + Delta-G solvation = 16.323049 kcal Electronic energy + Delta-G solvation = -21325.169328 eV Core-core repulsion = 18368.162580 eV Total energy + Delta-G solvation = -2957.006748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.97220 -37.98403 -32.84923 -32.71252 -32.10800 -30.84245 -29.37367 -27.32518 -26.74921 -26.02243 -22.80977 -22.41540 -21.91915 -21.37793 -18.70369 -17.27925 -16.61031 -15.60870 -15.27051 -15.09662 -14.87511 -14.46094 -14.22903 -13.80070 -13.65491 -13.43092 -13.30980 -12.84390 -12.64654 -12.47350 -12.30396 -12.04769 -12.02815 -11.68807 -11.60639 -11.09390 -11.02842 -10.97140 -10.77318 -10.70639 -10.62617 -10.37389 -10.11231 -9.74398 -9.50686 -9.23376 -9.16575 -8.83312 -8.37647 -7.24209 -6.80631 -5.98489 -3.97942 1.37888 1.52912 1.97383 2.94096 3.34802 3.41227 3.46805 3.82619 4.45807 4.78061 4.89188 4.94439 5.10136 5.16044 5.31483 5.37573 5.42874 5.50114 5.55669 5.62414 5.71483 5.72157 5.75629 5.80139 5.89258 5.98387 6.01090 6.03399 6.14713 6.16710 6.23536 6.44877 6.44978 6.49325 6.58182 6.68954 6.70617 6.79348 7.07037 7.24224 7.34704 7.86567 8.13224 8.23509 8.58010 9.09535 9.65732 11.12208 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011996 B = 0.005012 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.479231 B = 5584.786656 C = 6847.455859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 N -0.522 5.522 4 C 0.193 3.807 5 C -0.497 4.497 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.902 5.902 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.272 1.272 13 C 0.093 3.907 14 H 0.078 0.922 15 C -0.179 4.179 16 C -0.099 4.099 17 S -0.068 6.068 18 C -0.086 4.086 19 C -0.132 4.132 20 C -0.100 4.100 21 C -0.107 4.107 22 C -0.109 4.109 23 C -0.103 4.103 24 C -0.104 4.104 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.021 0.979 30 H -0.010 1.010 31 H 0.032 0.968 32 H 0.259 0.741 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.121 0.879 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 9.678 -7.494 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 N -0.246 5.246 4 C 0.068 3.932 5 C -0.536 4.536 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.542 5.542 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.197 1.197 13 C -0.017 4.017 14 H 0.096 0.904 15 C -0.240 4.240 16 C -0.248 4.248 17 S 0.180 5.820 18 C -0.199 4.199 19 C -0.157 4.157 20 C -0.120 4.120 21 C -0.111 4.111 22 C -0.166 4.166 23 C -0.123 4.123 24 C -0.128 4.128 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.039 0.961 30 H 0.008 0.992 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.139 0.861 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.072 9.242 -6.542 15.154 hybrid contribution 1.918 0.085 -0.275 1.939 sum -8.154 9.327 -6.817 14.141 Atomic orbital electron populations 1.21795 0.96538 1.00099 1.01735 1.21980 0.94304 0.90311 1.00698 1.62397 1.23079 1.15772 1.23395 1.19753 0.80997 0.96305 0.96116 1.21157 0.93170 1.46864 0.92371 0.91895 1.24948 0.95849 0.95627 0.98145 1.69945 0.98844 1.50033 1.35420 0.86553 0.77720 0.77853 0.85671 1.20864 1.21391 1.19713 1.21366 0.98899 0.90673 0.90806 0.90385 1.22432 1.01683 1.01093 0.98797 1.23885 1.02360 0.98874 0.99655 1.85687 1.40931 0.95739 1.59668 1.22141 0.98887 0.98921 0.99967 1.21190 0.97417 0.96377 1.00702 1.20889 0.99194 0.92782 0.99114 1.19831 0.96823 0.95928 0.98478 1.20730 1.01601 0.92050 1.02206 1.20887 0.97189 0.95201 0.99030 1.20705 1.00214 0.92519 0.99362 0.93719 0.93512 0.92059 0.90066 0.96087 0.99199 0.95051 0.93094 0.91316 0.92273 0.93070 0.88478 0.90354 0.85967 0.86217 0.91439 0.91869 0.91859 0.86067 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.96 37.16 0.37 -1.86 16 2 C 0.06 1.03 5.41 -3.82 -0.02 1.01 16 3 N -0.52 -10.70 3.99 -228.08 -0.91 -11.61 16 4 C 0.19 4.82 3.29 -4.98 -0.02 4.80 16 5 C -0.50 -13.84 8.57 -34.44 -0.30 -14.13 16 6 H 0.06 1.77 7.77 -52.48 -0.41 1.36 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.09 1.60 2.21 -67.71 -0.15 1.45 16 14 H 0.08 1.24 6.38 -51.93 -0.33 0.91 16 15 C -0.18 -2.85 8.53 37.16 0.32 -2.54 16 16 C -0.10 -1.66 3.74 37.16 0.14 -1.52 16 17 S -0.07 -1.18 21.63 -107.50 -2.33 -3.50 16 18 C -0.09 -1.40 6.11 -39.04 -0.24 -1.63 16 19 C -0.13 -2.03 9.36 -39.36 -0.37 -2.40 16 20 C -0.10 -1.35 9.69 -39.61 -0.38 -1.73 16 21 C -0.11 -1.35 5.88 -104.58 -0.62 -1.96 16 22 C -0.11 -1.01 10.01 36.00 0.36 -0.65 16 23 C -0.10 -1.32 9.69 -39.61 -0.38 -1.71 16 24 C -0.10 -1.52 9.79 -39.36 -0.39 -1.91 16 25 H 0.04 0.64 6.60 -51.93 -0.34 0.30 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.68 7.34 -51.93 -0.38 1.30 16 29 H 0.02 0.37 6.33 -51.93 -0.33 0.05 16 30 H -0.01 -0.26 7.35 -51.93 -0.38 -0.64 16 31 H 0.03 0.84 5.83 -51.93 -0.30 0.54 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.07 1.24 6.72 -51.93 -0.35 0.90 16 34 H 0.06 0.92 6.56 -51.92 -0.34 0.58 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.10 1.87 5.78 -51.92 -0.30 1.57 16 37 H 0.08 1.11 7.76 -51.93 -0.40 0.71 16 38 H 0.12 1.82 5.88 -52.49 -0.31 1.51 16 39 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 42 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -29.92 358.99 -10.99 -40.91 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.11 Total: 1.13 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -1.77 Total: -23.33 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.17 Total: -37.55 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -2.33 Total: -3.50 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.92 -10.99 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255768607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.233 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds