Wall clock time and date at job start Tue Mar 31 2020 06:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.46968 * 2 1 4 4 C 1.42905 * 113.99771 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47032 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46902 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47204 * 180.02562 * 6 5 4 8 8 C 1.46892 * 111.00131 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.47114 * 324.99774 * 8 7 6 10 10 C 1.52997 * 109.47295 * 84.99918 * 8 7 6 11 11 C 1.50696 * 109.47167 * 204.99735 * 8 7 6 12 12 C 1.38300 * 119.93262 * 319.72911 * 11 8 7 13 13 C 1.38104 * 120.07247 * 179.72590 * 12 11 8 14 14 C 1.38880 * 119.92810 * 0.54158 * 13 12 11 15 15 O 1.35747 * 120.07174 * 179.75066 * 14 13 12 16 16 C 1.34825 * 117.00597 * 174.44425 * 15 14 13 17 17 H 1.08005 * 119.99735 * 5.05211 * 16 15 14 18 18 C 1.38651 * 120.00550 * 185.05478 * 16 15 14 19 19 N 1.31557 * 119.99702 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00148 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46906 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46956 * 120.00407 * 20 18 16 23 23 H 1.48504 * 109.47096 * 240.00135 * 20 18 16 24 24 C 1.38882 * 119.86199 * 359.72799 * 14 13 12 25 25 C 1.38098 * 119.93192 * 0.02562 * 24 14 13 26 26 H 1.09003 * 109.46702 * 59.99841 * 1 2 3 27 27 H 1.08999 * 109.47035 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47088 * 300.00708 * 1 2 3 29 29 H 1.08991 * 109.47430 * 239.99613 * 2 1 3 30 30 H 1.09003 * 109.46952 * 119.99668 * 2 1 3 31 31 H 1.09000 * 109.46957 * 59.99411 * 4 3 2 32 32 H 1.09003 * 109.47291 * 299.99931 * 4 3 2 33 33 H 1.09002 * 109.47413 * 60.00385 * 5 4 3 34 34 H 1.08994 * 109.47047 * 299.99540 * 5 4 3 35 35 H 1.08995 * 109.47560 * 59.99725 * 6 5 4 36 36 H 1.09004 * 109.46743 * 299.99569 * 6 5 4 37 37 H 1.00903 * 110.99438 * 303.95610 * 7 6 5 38 38 H 1.08994 * 109.47650 * 59.99661 * 10 8 7 39 39 H 1.09004 * 109.47560 * 180.02562 * 10 8 7 40 40 H 1.08998 * 109.47148 * 299.99944 * 10 8 7 41 41 H 1.08005 * 119.96345 * 359.97438 * 12 11 8 42 42 H 1.08000 * 120.03674 * 180.27353 * 13 12 11 43 43 H 0.97001 * 120.00315 * 179.97438 * 19 18 16 44 44 H 1.07994 * 120.03671 * 179.97438 * 24 14 13 45 45 H 1.08000 * 119.97139 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 6 5.3507 3.0591 -0.0001 7 7 5.7296 4.4785 -0.0002 8 6 7.1903 4.6334 0.0004 9 1 7.6402 3.8347 0.5902 10 6 7.7113 4.5620 -1.4363 11 6 7.5537 5.9670 0.6007 12 6 6.7993 7.0869 0.3019 13 6 7.1264 8.3094 0.8549 14 6 8.2209 8.4156 1.7031 15 8 8.5480 9.6168 2.2443 16 6 9.5490 9.6292 3.1474 17 1 10.1050 8.7256 3.3498 18 6 9.8648 10.8018 3.8165 19 7 9.1873 11.9023 3.5704 20 14 11.2512 10.8186 5.0683 21 1 11.8508 9.4633 5.1610 22 1 12.2901 11.7910 4.6432 23 1 10.7153 11.2153 6.3952 24 6 8.9799 7.2902 1.9969 25 6 8.6446 6.0696 1.4448 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8340 0.9763 -0.8891 32 1 3.8334 0.9767 0.8908 33 1 3.4223 3.4225 0.8894 34 1 3.4231 3.4213 -0.8906 35 1 5.7535 2.5751 -0.8898 36 1 5.7534 2.5760 0.8902 37 1 5.3144 4.9634 -0.7816 38 1 7.2615 5.3606 -2.0262 39 1 8.7953 4.6765 -1.4359 40 1 7.4485 3.5974 -1.8706 41 1 5.9511 7.0046 -0.3616 42 1 6.5343 9.1828 0.6246 43 1 9.4079 12.7227 4.0387 44 1 9.8318 7.3697 2.6558 45 1 9.2341 5.1940 1.6731 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037214637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:56 Heat of formation + Delta-G solvation = -63.608819 kcal Electronic energy + Delta-G solvation = -22305.990672 eV Core-core repulsion = 18902.764947 eV Total energy + Delta-G solvation = -3403.225725 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.17969 -38.48517 -37.59425 -35.85352 -33.41679 -32.19886 -31.35316 -30.14890 -29.18245 -27.83706 -25.37111 -24.69098 -23.13418 -22.51260 -21.95559 -21.35293 -19.94768 -17.88110 -17.04326 -16.91225 -16.70412 -15.67428 -15.28097 -15.15851 -14.57176 -14.42607 -14.18135 -13.92345 -13.58983 -13.52591 -13.10043 -12.94938 -12.86287 -12.65579 -12.50246 -12.23157 -12.00766 -11.83910 -11.72201 -11.63004 -11.29924 -11.23460 -11.16299 -11.02284 -10.64769 -10.55275 -10.38761 -10.36975 -9.90667 -9.26866 -8.78584 -8.35525 -8.08907 -7.08797 -6.40468 -3.99085 2.29920 2.39200 3.14617 3.16257 3.21728 3.27842 4.00343 4.24106 4.63424 4.65337 4.73030 4.78925 4.97549 4.98449 5.03551 5.08326 5.13135 5.19552 5.23014 5.30626 5.38316 5.40463 5.45801 5.51382 5.54446 5.70503 5.74376 5.80945 5.84990 5.92468 6.01414 6.06117 6.17083 6.29211 6.48893 6.77808 6.88269 6.92884 7.06393 7.13622 7.36055 7.41740 7.48651 7.51681 7.90213 8.05040 9.05526 9.77241 10.77918 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.027442 B = 0.002194 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.084597 B =12759.941428 C =13071.744871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.390 6.390 4 C 0.065 3.935 5 C -0.117 4.117 6 C 0.063 3.937 7 N -0.679 5.679 8 C 0.141 3.859 9 H 0.075 0.925 10 C -0.176 4.176 11 C -0.167 4.167 12 C -0.053 4.053 13 C -0.194 4.194 14 C 0.153 3.847 15 O -0.181 6.181 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.233 4.233 25 C -0.069 4.069 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.340 0.660 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.269 0.731 44 H 0.125 0.875 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.303 -21.708 -8.339 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.012 4.012 5 C -0.155 4.155 6 C -0.066 4.066 7 N -0.309 5.309 8 C 0.032 3.968 9 H 0.093 0.907 10 C -0.235 4.235 11 C -0.168 4.168 12 C -0.072 4.072 13 C -0.213 4.213 14 C 0.100 3.900 15 O -0.084 6.084 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.252 4.252 25 C -0.087 4.087 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.158 0.842 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.078 0.922 44 H 0.143 0.857 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.568 -21.015 -7.603 24.310 hybrid contribution 1.160 -0.526 -0.246 1.298 sum -8.408 -21.541 -7.849 24.420 Atomic orbital electron populations 1.21748 0.93740 1.02183 1.03252 1.22448 0.95648 0.83918 0.99956 1.87894 1.21317 1.26303 1.95420 1.22438 0.81066 0.97698 1.00003 1.21471 0.95441 0.94509 1.04099 1.21832 0.94311 0.90080 1.00410 1.60553 1.09507 1.10736 1.50131 1.20184 0.86538 0.95686 0.94375 0.90680 1.22497 1.02552 1.00790 0.97648 1.19065 0.99390 0.93789 1.04569 1.20314 0.97494 0.91327 0.98041 1.20212 0.99160 0.98075 1.03871 1.19390 0.92399 0.86076 0.92181 1.83976 1.49450 1.24197 1.50807 1.21360 1.10040 0.97824 1.17427 0.89096 1.25277 0.98823 0.94425 0.98080 1.70050 1.39073 1.00169 1.40642 0.85657 0.79586 0.78729 0.79504 1.19152 1.20211 1.20180 1.21104 1.04020 0.92883 1.07239 1.20537 0.95931 0.96397 0.95866 0.91842 0.91164 0.91752 0.93563 0.93449 0.93599 0.93249 0.89997 0.91292 0.95451 0.90976 0.84171 0.92320 0.91826 0.93459 0.87354 0.86709 0.92154 0.85697 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.42 6.66 37.16 0.25 0.67 16 3 O -0.39 -3.99 10.34 -35.23 -0.36 -4.36 16 4 C 0.07 0.56 5.94 37.16 0.22 0.78 16 5 C -0.12 -1.11 5.84 -26.73 -0.16 -1.27 16 6 C 0.06 0.61 5.48 -3.82 -0.02 0.59 16 7 N -0.68 -8.14 5.71 -107.95 -0.62 -8.76 16 8 C 0.14 1.85 2.79 -68.87 -0.19 1.66 16 9 H 0.07 0.96 7.66 -51.92 -0.40 0.56 16 10 C -0.18 -1.99 9.14 37.16 0.34 -1.65 16 11 C -0.17 -2.83 4.96 -104.57 -0.52 -3.35 16 12 C -0.05 -0.96 9.31 -39.61 -0.37 -1.33 16 13 C -0.19 -4.19 9.99 -39.39 -0.39 -4.58 16 14 C 0.15 3.77 6.65 -39.11 -0.26 3.51 16 15 O -0.18 -5.25 9.76 0.07 0.00 -5.25 16 16 C -0.39 -11.08 9.49 30.89 0.29 -10.78 16 17 H 0.09 2.40 5.20 -52.48 -0.27 2.12 16 18 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 20 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 24 C -0.23 -5.15 9.17 -39.39 -0.36 -5.51 16 25 C -0.07 -1.27 9.66 -39.61 -0.38 -1.65 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.03 0.24 7.44 -51.93 -0.39 -0.15 16 36 H 0.07 0.71 8.05 -51.93 -0.42 0.30 16 37 H 0.34 3.77 7.82 -39.29 -0.31 3.46 16 38 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.46 7.45 -51.93 -0.39 0.07 16 41 H 0.11 1.67 7.25 -52.48 -0.38 1.28 16 42 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 45 H 0.10 1.63 8.03 -52.49 -0.42 1.21 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -31.40 371.67 -8.39 -39.78 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -7.48 Total: 4.66 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -1.27 Total: -22.53 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.14 Total: -33.69 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.36 Total: -9.61 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.40 -8.39 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037214637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.824 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds