Wall clock time and date at job start Tue Mar 31 2020 06:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.46968 * 2 1 4 4 C 1.42905 * 113.99771 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47032 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46902 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47204 * 180.02562 * 6 5 4 8 8 C 1.46892 * 111.00131 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.47114 * 324.99774 * 8 7 6 10 10 C 1.52997 * 109.47295 * 84.99918 * 8 7 6 11 11 C 1.50696 * 109.47167 * 204.99735 * 8 7 6 12 12 C 1.38300 * 119.93262 * 319.72911 * 11 8 7 13 13 C 1.38104 * 120.07247 * 179.72590 * 12 11 8 14 14 C 1.38880 * 119.92810 * 0.54158 * 13 12 11 15 15 O 1.35747 * 120.07174 * 179.75066 * 14 13 12 16 16 C 1.34825 * 117.00597 * 174.44425 * 15 14 13 17 17 H 1.08005 * 119.99735 * 5.05211 * 16 15 14 18 18 C 1.38651 * 120.00550 * 185.05478 * 16 15 14 19 19 N 1.31557 * 119.99702 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00148 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46906 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46956 * 120.00407 * 20 18 16 23 23 H 1.48504 * 109.47096 * 240.00135 * 20 18 16 24 24 C 1.38882 * 119.86199 * 359.72799 * 14 13 12 25 25 C 1.38098 * 119.93192 * 0.02562 * 24 14 13 26 26 H 1.09003 * 109.46702 * 59.99841 * 1 2 3 27 27 H 1.08999 * 109.47035 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47088 * 300.00708 * 1 2 3 29 29 H 1.08991 * 109.47430 * 239.99613 * 2 1 3 30 30 H 1.09003 * 109.46952 * 119.99668 * 2 1 3 31 31 H 1.09000 * 109.46957 * 59.99411 * 4 3 2 32 32 H 1.09003 * 109.47291 * 299.99931 * 4 3 2 33 33 H 1.09002 * 109.47413 * 60.00385 * 5 4 3 34 34 H 1.08994 * 109.47047 * 299.99540 * 5 4 3 35 35 H 1.08995 * 109.47560 * 59.99725 * 6 5 4 36 36 H 1.09004 * 109.46743 * 299.99569 * 6 5 4 37 37 H 1.00903 * 110.99438 * 303.95610 * 7 6 5 38 38 H 1.08994 * 109.47650 * 59.99661 * 10 8 7 39 39 H 1.09004 * 109.47560 * 180.02562 * 10 8 7 40 40 H 1.08998 * 109.47148 * 299.99944 * 10 8 7 41 41 H 1.08005 * 119.96345 * 359.97438 * 12 11 8 42 42 H 1.08000 * 120.03674 * 180.27353 * 13 12 11 43 43 H 0.97001 * 120.00315 * 179.97438 * 19 18 16 44 44 H 1.07994 * 120.03671 * 179.97438 * 24 14 13 45 45 H 1.08000 * 119.97139 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 6 5.3507 3.0591 -0.0001 7 7 5.7296 4.4785 -0.0002 8 6 7.1903 4.6334 0.0004 9 1 7.6402 3.8347 0.5902 10 6 7.7113 4.5620 -1.4363 11 6 7.5537 5.9670 0.6007 12 6 6.7993 7.0869 0.3019 13 6 7.1264 8.3094 0.8549 14 6 8.2209 8.4156 1.7031 15 8 8.5480 9.6168 2.2443 16 6 9.5490 9.6292 3.1474 17 1 10.1050 8.7256 3.3498 18 6 9.8648 10.8018 3.8165 19 7 9.1873 11.9023 3.5704 20 14 11.2512 10.8186 5.0683 21 1 11.8508 9.4633 5.1610 22 1 12.2901 11.7910 4.6432 23 1 10.7153 11.2153 6.3952 24 6 8.9799 7.2902 1.9969 25 6 8.6446 6.0696 1.4448 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8340 0.9763 -0.8891 32 1 3.8334 0.9767 0.8908 33 1 3.4223 3.4225 0.8894 34 1 3.4231 3.4213 -0.8906 35 1 5.7535 2.5751 -0.8898 36 1 5.7534 2.5760 0.8902 37 1 5.3144 4.9634 -0.7816 38 1 7.2615 5.3606 -2.0262 39 1 8.7953 4.6765 -1.4359 40 1 7.4485 3.5974 -1.8706 41 1 5.9511 7.0046 -0.3616 42 1 6.5343 9.1828 0.6246 43 1 9.4079 12.7227 4.0387 44 1 9.8318 7.3697 2.6558 45 1 9.2341 5.1940 1.6731 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037214637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:55 Heat of formation + Delta-G solvation = -83.674010 kcal Electronic energy + Delta-G solvation = -22306.860764 eV Core-core repulsion = 18902.764947 eV Total energy + Delta-G solvation = -3404.095816 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.82455 -39.31197 -38.88420 -37.19064 -34.51035 -34.00502 -32.10048 -31.74960 -30.26105 -29.10801 -27.34239 -25.51996 -23.95766 -23.66961 -23.36187 -22.25117 -21.38165 -19.73200 -18.79829 -17.72320 -17.34268 -16.77925 -16.52407 -16.19303 -16.10953 -15.71923 -15.47445 -15.32100 -14.97621 -14.78428 -14.40762 -14.05427 -14.00366 -13.77699 -13.51387 -13.40852 -13.27895 -12.98995 -12.78428 -12.55871 -12.44681 -12.42577 -12.20577 -12.10142 -12.00769 -11.88128 -11.73337 -11.63201 -11.12918 -10.77265 -10.53149 -9.72248 -9.27190 -8.82744 -8.45484 -6.13348 0.65368 0.76111 1.35087 1.43856 1.53702 2.18778 2.63048 2.85585 3.17712 3.44026 3.56428 3.96981 4.05529 4.11363 4.17408 4.19623 4.21446 4.29088 4.39869 4.41889 4.44924 4.49788 4.53826 4.59852 4.64598 4.75194 4.77965 4.88068 4.92059 4.95184 5.03062 5.14273 5.17670 5.22682 5.24555 5.28473 5.32906 5.34761 5.63601 5.75551 5.82417 6.05690 6.20380 6.29322 6.32806 6.54410 6.99445 7.82238 8.78322 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.027442 B = 0.002194 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.084597 B =12759.941428 C =13071.744871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.417 6.417 4 C 0.065 3.935 5 C -0.111 4.111 6 C 0.069 3.931 7 N -0.694 5.694 8 C 0.145 3.855 9 H 0.088 0.912 10 C -0.171 4.171 11 C -0.141 4.141 12 C -0.047 4.047 13 C -0.207 4.207 14 C 0.108 3.892 15 O -0.236 6.236 16 C -0.412 4.412 17 H 0.101 0.899 18 C -0.026 4.026 19 N -0.923 5.923 20 Si 1.020 2.980 21 H -0.251 1.251 22 H -0.268 1.268 23 H -0.269 1.269 24 C -0.242 4.242 25 C -0.069 4.069 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.346 0.654 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.141 0.859 42 H 0.109 0.891 43 H 0.272 0.728 44 H 0.117 0.883 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.092 -25.510 -9.241 28.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.337 6.337 4 C -0.012 4.012 5 C -0.149 4.149 6 C -0.060 4.060 7 N -0.325 5.325 8 C 0.036 3.964 9 H 0.106 0.894 10 C -0.230 4.230 11 C -0.143 4.143 12 C -0.066 4.066 13 C -0.226 4.226 14 C 0.059 3.941 15 O -0.143 6.143 16 C -0.488 4.488 17 H 0.118 0.882 18 C -0.223 4.223 19 N -0.561 5.561 20 Si 0.839 3.161 21 H -0.175 1.175 22 H -0.193 1.193 23 H -0.194 1.194 24 C -0.261 4.261 25 C -0.087 4.087 26 H 0.076 0.924 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.165 0.835 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.159 0.841 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.380 -24.880 -8.540 27.928 hybrid contribution 0.896 0.356 -0.168 0.979 sum -8.484 -24.524 -8.708 27.372 Atomic orbital electron populations 1.21779 0.93230 1.03328 1.02552 1.22645 0.96184 0.82923 1.00892 1.87861 1.22175 1.28062 1.95617 1.22467 0.80625 0.97083 1.01018 1.21383 0.95377 0.95141 1.03038 1.21806 0.94213 0.88636 1.01321 1.60443 1.08661 1.12559 1.50864 1.20155 0.87624 0.93126 0.95508 0.89362 1.22427 1.02214 1.02234 0.96088 1.19677 0.97243 0.95596 1.01739 1.20675 0.98252 0.90106 0.97518 1.20467 0.98611 0.99618 1.03934 1.19935 0.94367 0.86068 0.93768 1.83936 1.50943 1.26685 1.52750 1.21856 1.10440 0.98638 1.17861 0.88182 1.26603 1.01799 0.93647 1.00212 1.70197 1.41872 1.01119 1.42933 0.84517 0.75813 0.79523 0.76254 1.17458 1.19284 1.19405 1.21212 1.03650 0.93654 1.07616 1.20931 0.96589 0.96034 0.95177 0.92357 0.89127 0.92616 0.92355 0.92701 0.92082 0.92643 0.92032 0.91395 0.93501 0.90911 0.83508 0.92462 0.92152 0.90987 0.84133 0.87327 0.91919 0.86558 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.05 0.64 6.66 71.98 0.48 1.12 16 3 O -0.42 -7.84 10.34 -148.98 -1.54 -9.39 16 4 C 0.06 0.96 5.94 71.98 0.43 1.38 16 5 C -0.11 -1.84 5.84 30.59 0.18 -1.66 16 6 C 0.07 1.08 5.48 86.30 0.47 1.55 16 7 N -0.69 -14.04 5.71 -495.45 -2.83 -16.86 16 8 C 0.15 3.18 2.79 44.17 0.12 3.30 16 9 H 0.09 1.79 7.66 -2.38 -0.02 1.77 16 10 C -0.17 -3.09 9.14 71.98 0.66 -2.44 16 11 C -0.14 -4.40 4.96 -19.83 -0.10 -4.50 16 12 C -0.05 -1.63 9.31 22.25 0.21 -1.42 16 13 C -0.21 -9.16 9.99 22.39 0.22 -8.94 16 14 C 0.11 5.59 6.65 22.58 0.15 5.74 16 15 O -0.24 -14.66 9.76 -22.65 -0.22 -14.88 16 16 C -0.41 -24.60 9.49 67.92 0.64 -23.96 16 17 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 18 C -0.03 -1.49 5.49 84.83 0.47 -1.03 16 19 N -0.92 -57.86 13.67 21.61 0.30 -57.56 16 20 Si 1.02 43.77 29.55 68.60 2.03 45.80 16 21 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 24 C -0.24 -10.82 9.17 22.39 0.21 -10.62 16 25 C -0.07 -2.40 9.66 22.25 0.21 -2.19 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 0.59 7.44 -2.39 -0.02 0.57 16 36 H 0.07 1.16 8.05 -2.39 -0.02 1.14 16 37 H 0.35 6.35 7.82 -89.69 -0.70 5.65 16 38 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 39 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.07 1.00 7.45 -2.39 -0.02 0.98 16 41 H 0.14 3.92 7.25 -2.91 -0.02 3.90 16 42 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 43 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.12 5.30 5.64 -2.91 -0.02 5.28 16 45 H 0.14 3.85 8.03 -2.91 -0.02 3.83 16 Total: -1.00 -73.25 371.67 3.09 -70.16 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.26 Total: 27.33 kcal Atomic # 6 Polarization: -49.68 SS G_CDS: 5.09 Total: -44.59 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -2.53 Total: -74.43 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -1.76 Total: -24.27 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -73.25 3.09 -70.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037214637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.517 kcal (2) G-P(sol) polarization free energy of solvation -73.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds