Wall clock time and date at job start Tue Mar 31 2020 06:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42896 * 113.99730 * 2 1 4 4 C 1.52995 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47169 * 304.99652 * 4 3 2 6 6 C 1.53003 * 109.47507 * 64.99731 * 4 3 2 7 7 C 1.53010 * 109.47269 * 184.99901 * 4 3 2 8 8 N 1.46894 * 109.47087 * 174.99952 * 7 4 3 9 9 C 1.46904 * 110.99964 * 180.02562 * 8 7 4 10 10 H 1.08999 * 109.46421 * 324.99518 * 9 8 7 11 11 C 1.52997 * 109.47188 * 84.99499 * 9 8 7 12 12 C 1.50695 * 109.47086 * 204.99956 * 9 8 7 13 13 C 1.38301 * 119.93263 * 319.72485 * 12 9 8 14 14 C 1.38101 * 120.07034 * 179.72934 * 13 12 9 15 15 C 1.38874 * 119.93040 * 0.54318 * 14 13 12 16 16 O 1.35748 * 120.07262 * 179.75527 * 15 14 13 17 17 C 1.34828 * 117.00372 * 174.44099 * 16 15 14 18 18 H 1.07997 * 119.99614 * 5.05200 * 17 16 15 19 19 C 1.38658 * 119.99624 * 185.05206 * 17 16 15 20 20 N 1.31557 * 119.99385 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00473 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.46937 * 89.99808 * 21 19 17 23 23 H 1.48497 * 109.47132 * 210.00225 * 21 19 17 24 24 H 1.48501 * 109.46912 * 330.00256 * 21 19 17 25 25 C 1.38880 * 119.86305 * 359.72349 * 15 14 13 26 26 C 1.38109 * 119.92823 * 0.02562 * 25 15 14 27 27 H 1.09010 * 109.46669 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47109 * 299.99639 * 1 2 3 29 29 H 1.08991 * 109.47016 * 60.00538 * 1 2 3 30 30 H 1.09005 * 109.47476 * 59.99372 * 3 2 1 31 31 H 1.09007 * 109.47202 * 300.00058 * 3 2 1 32 32 H 1.09000 * 109.47276 * 180.02562 * 6 4 3 33 33 H 1.08999 * 109.46971 * 59.99799 * 6 4 3 34 34 H 1.09001 * 109.46874 * 300.00468 * 6 4 3 35 35 H 1.08995 * 109.46419 * 294.99718 * 7 4 3 36 36 H 1.09000 * 109.46972 * 54.99264 * 7 4 3 37 37 H 1.00906 * 111.00083 * 303.95203 * 8 7 4 38 38 H 1.09000 * 109.46950 * 60.00416 * 11 9 8 39 39 H 1.09005 * 109.46530 * 180.02562 * 11 9 8 40 40 H 1.08999 * 109.47416 * 300.00171 * 11 9 8 41 41 H 1.08003 * 119.96472 * 0.02562 * 13 12 9 42 42 H 1.07996 * 120.03240 * 180.27253 * 14 13 12 43 43 H 0.96999 * 120.00047 * 179.97438 * 20 19 17 44 44 H 1.07999 * 120.03915 * 179.97438 * 25 15 14 45 45 H 1.08002 * 119.96344 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8515 0.5683 0.8409 6 6 3.9953 0.5369 -1.3083 7 6 4.1574 2.5770 0.1251 8 7 5.6161 2.4527 0.2448 9 6 6.2486 3.7728 0.3684 10 1 5.6995 4.4965 -0.2340 11 6 6.2314 4.2115 1.8340 12 6 7.6735 3.6944 -0.1159 13 6 8.4478 2.5911 0.1936 14 6 9.7522 2.5137 -0.2534 15 6 10.2897 3.5505 -1.0049 16 8 11.5731 3.4797 -1.4416 17 6 11.9961 4.4632 -2.2611 18 1 11.3504 5.3018 -2.4762 19 6 13.2600 4.3979 -2.8276 20 7 13.6728 5.3579 -3.6268 21 14 14.3769 2.9479 -2.4549 22 1 14.1449 1.8746 -3.4546 23 1 15.7945 3.3858 -2.5185 24 1 14.0793 2.4305 -1.0951 25 6 9.5114 4.6596 -1.3094 26 6 8.2060 4.7287 -0.8638 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.6885 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 5.0819 0.4505 -1.3085 33 1 3.6792 1.1533 -2.1499 34 1 3.5522 -0.4549 -1.3978 35 1 3.9142 3.1647 -0.7601 36 1 3.7609 3.0734 1.0108 37 1 5.8659 1.8584 1.0211 38 1 6.7805 3.4878 2.4363 39 1 6.7003 5.1913 1.9254 40 1 5.2008 4.2682 2.1842 41 1 8.0304 1.7869 0.7815 42 1 10.3549 1.6499 -0.0151 43 1 14.5571 5.3125 -4.0229 44 1 9.9267 5.4677 -1.8933 45 1 7.6001 5.5908 -1.1006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045657466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:33 Heat of formation + Delta-G solvation = -58.679271 kcal Electronic energy + Delta-G solvation = -22879.233854 eV Core-core repulsion = 19476.221891 eV Total energy + Delta-G solvation = -3403.011963 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.34668 -38.65213 -37.68325 -36.15697 -34.03330 -32.32164 -30.36942 -29.94849 -28.06539 -27.50692 -26.29368 -25.31359 -24.44349 -22.45615 -21.90281 -20.61032 -19.84185 -17.79088 -17.25250 -16.81447 -16.31240 -15.71569 -15.54297 -15.04311 -14.90786 -14.36728 -14.18145 -13.78568 -13.68522 -13.59985 -13.14312 -13.04225 -12.74907 -12.58517 -12.46339 -12.24208 -12.18469 -12.01770 -11.84613 -11.48005 -11.22508 -11.12034 -11.04799 -10.83494 -10.68246 -10.55795 -10.48398 -10.10665 -9.98197 -9.34045 -8.82619 -8.37901 -8.17960 -7.23616 -6.38078 -4.04406 2.19792 2.28149 3.24477 3.28393 3.36591 3.43060 4.23229 4.26939 4.55840 4.61802 4.78422 4.84380 4.91088 4.97863 5.02737 5.05531 5.14297 5.17282 5.21405 5.28519 5.31198 5.38793 5.45457 5.62556 5.64450 5.69700 5.72925 5.86765 5.92714 6.02496 6.10541 6.13962 6.19820 6.37908 6.40431 6.62498 6.79891 6.84115 6.97035 7.16134 7.33717 7.37873 7.40197 7.66893 7.84513 8.08322 8.97614 9.61260 10.69769 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028829 B = 0.002567 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.022320 B =10905.929280 C =11287.762827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.066 3.934 4 C -0.087 4.087 5 H 0.076 0.924 6 C -0.135 4.135 7 C 0.066 3.934 8 N -0.675 5.675 9 C 0.140 3.860 10 H 0.076 0.924 11 C -0.176 4.176 12 C -0.157 4.157 13 C -0.055 4.055 14 C -0.194 4.194 15 C 0.158 3.842 16 O -0.220 6.220 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.062 3.938 20 N -0.882 5.882 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.220 4.220 26 C -0.070 4.070 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.027 0.973 37 H 0.339 0.661 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.279 0.721 44 H 0.131 0.869 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.726 -6.307 9.131 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.011 4.011 4 C -0.106 4.106 5 H 0.094 0.906 6 C -0.193 4.193 7 C -0.064 4.064 8 N -0.306 5.306 9 C 0.031 3.969 10 H 0.094 0.906 11 C -0.235 4.235 12 C -0.159 4.159 13 C -0.074 4.074 14 C -0.213 4.213 15 C 0.106 3.894 16 O -0.125 6.125 17 C -0.464 4.464 18 H 0.123 0.877 19 C -0.141 4.141 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.184 1.184 25 C -0.239 4.239 26 C -0.089 4.089 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.045 0.955 37 H 0.157 0.843 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.128 0.872 42 H 0.133 0.867 43 H 0.089 0.911 44 H 0.149 0.851 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.148 -6.585 8.344 24.567 hybrid contribution 0.035 0.169 0.872 0.889 sum -22.113 -6.416 9.216 24.801 Atomic orbital electron populations 1.22731 0.81226 1.02689 0.99865 1.87884 1.19450 1.28036 1.95377 1.22568 0.94040 0.84536 0.99970 1.21093 0.92054 0.96948 1.00527 0.90572 1.21665 1.02446 0.99858 0.95288 1.21912 0.88427 0.95656 1.00370 1.60550 1.07051 1.13288 1.49664 1.20203 0.92666 0.89730 0.94346 0.90552 1.22495 1.00771 1.02703 0.97527 1.19125 0.94526 0.96836 1.05374 1.20310 0.92352 0.96512 0.98203 1.20204 0.96203 0.99102 1.05776 1.19127 0.84261 0.93189 0.92794 1.83571 1.22547 1.48043 1.58362 1.20759 1.01633 1.00622 1.23347 0.87694 1.24467 0.96649 0.98059 0.94923 1.69649 1.20192 1.32390 1.29750 0.86177 0.78807 0.81725 0.80162 1.19906 1.20862 1.18399 1.21224 0.95045 1.00433 1.07227 1.20594 0.94688 0.97180 0.96409 0.89682 0.94241 0.94116 0.93615 0.93205 0.91054 0.93288 0.92848 0.90866 0.95471 0.84251 0.92341 0.91799 0.93383 0.87183 0.86744 0.91129 0.85093 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.78 10.24 -35.23 -0.36 -4.14 16 3 C 0.07 0.55 5.32 37.15 0.20 0.75 16 4 C -0.09 -0.80 2.77 -90.62 -0.25 -1.05 16 5 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.14 -1.41 8.98 37.16 0.33 -1.07 16 7 C 0.07 0.61 4.87 -3.82 -0.02 0.59 16 8 N -0.68 -7.48 5.16 -107.95 -0.56 -8.04 16 9 C 0.14 1.72 2.78 -68.87 -0.19 1.53 16 10 H 0.08 0.93 7.66 -51.93 -0.40 0.53 16 11 C -0.18 -1.88 9.14 37.16 0.34 -1.55 16 12 C -0.16 -2.53 4.96 -104.58 -0.52 -3.05 16 13 C -0.06 -0.93 9.31 -39.61 -0.37 -1.30 16 14 C -0.19 -3.86 9.99 -39.40 -0.39 -4.26 16 15 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 16 O -0.22 -5.88 8.59 0.06 0.00 -5.88 16 17 C -0.39 -11.05 9.95 30.89 0.31 -10.74 16 18 H 0.11 3.05 5.44 -52.49 -0.29 2.76 16 19 C 0.06 1.75 5.49 -17.51 -0.10 1.66 16 20 N -0.88 -25.69 13.96 55.48 0.77 -24.92 16 21 Si 0.91 21.94 28.62 -169.99 -4.86 17.08 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.22 -4.77 9.17 -39.39 -0.36 -5.13 16 26 C -0.07 -1.26 9.66 -39.61 -0.38 -1.64 16 27 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.56 7.82 -51.93 -0.41 0.16 16 35 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 36 H 0.03 0.23 7.44 -51.93 -0.39 -0.16 16 37 H 0.34 3.47 7.81 -39.29 -0.31 3.17 16 38 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.44 7.45 -51.93 -0.39 0.05 16 41 H 0.11 1.55 7.25 -52.48 -0.38 1.17 16 42 H 0.11 2.15 8.06 -52.49 -0.42 1.73 16 43 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.13 2.99 5.64 -52.49 -0.30 2.70 16 45 H 0.11 1.64 8.03 -52.49 -0.42 1.22 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -30.01 367.92 -7.47 -37.47 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.45 Total: 3.39 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -0.55 Total: -20.51 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.22 Total: -32.96 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.36 Total: -10.02 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.86 Total: 17.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.01 -7.47 -37.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045657466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.205 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds