Wall clock time and date at job start Tue Mar 31 2020 06:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42896 * 113.99730 * 2 1 4 4 C 1.52995 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47169 * 304.99652 * 4 3 2 6 6 C 1.53003 * 109.47507 * 64.99731 * 4 3 2 7 7 C 1.53010 * 109.47269 * 184.99901 * 4 3 2 8 8 N 1.46894 * 109.47087 * 174.99952 * 7 4 3 9 9 C 1.46904 * 110.99964 * 180.02562 * 8 7 4 10 10 H 1.08999 * 109.46421 * 324.99518 * 9 8 7 11 11 C 1.52997 * 109.47188 * 84.99499 * 9 8 7 12 12 C 1.50695 * 109.47086 * 204.99956 * 9 8 7 13 13 C 1.38301 * 119.93263 * 319.72485 * 12 9 8 14 14 C 1.38101 * 120.07034 * 179.72934 * 13 12 9 15 15 C 1.38874 * 119.93040 * 0.54318 * 14 13 12 16 16 O 1.35748 * 120.07262 * 179.75527 * 15 14 13 17 17 C 1.34828 * 117.00372 * 174.44099 * 16 15 14 18 18 H 1.07997 * 119.99614 * 5.05200 * 17 16 15 19 19 C 1.38658 * 119.99624 * 185.05206 * 17 16 15 20 20 N 1.31557 * 119.99385 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00473 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.46937 * 89.99808 * 21 19 17 23 23 H 1.48497 * 109.47132 * 210.00225 * 21 19 17 24 24 H 1.48501 * 109.46912 * 330.00256 * 21 19 17 25 25 C 1.38880 * 119.86305 * 359.72349 * 15 14 13 26 26 C 1.38109 * 119.92823 * 0.02562 * 25 15 14 27 27 H 1.09010 * 109.46669 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47109 * 299.99639 * 1 2 3 29 29 H 1.08991 * 109.47016 * 60.00538 * 1 2 3 30 30 H 1.09005 * 109.47476 * 59.99372 * 3 2 1 31 31 H 1.09007 * 109.47202 * 300.00058 * 3 2 1 32 32 H 1.09000 * 109.47276 * 180.02562 * 6 4 3 33 33 H 1.08999 * 109.46971 * 59.99799 * 6 4 3 34 34 H 1.09001 * 109.46874 * 300.00468 * 6 4 3 35 35 H 1.08995 * 109.46419 * 294.99718 * 7 4 3 36 36 H 1.09000 * 109.46972 * 54.99264 * 7 4 3 37 37 H 1.00906 * 111.00083 * 303.95203 * 8 7 4 38 38 H 1.09000 * 109.46950 * 60.00416 * 11 9 8 39 39 H 1.09005 * 109.46530 * 180.02562 * 11 9 8 40 40 H 1.08999 * 109.47416 * 300.00171 * 11 9 8 41 41 H 1.08003 * 119.96472 * 0.02562 * 13 12 9 42 42 H 1.07996 * 120.03240 * 180.27253 * 14 13 12 43 43 H 0.96999 * 120.00047 * 179.97438 * 20 19 17 44 44 H 1.07999 * 120.03915 * 179.97438 * 25 15 14 45 45 H 1.08002 * 119.96344 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8515 0.5683 0.8409 6 6 3.9953 0.5369 -1.3083 7 6 4.1574 2.5770 0.1251 8 7 5.6161 2.4527 0.2448 9 6 6.2486 3.7728 0.3684 10 1 5.6995 4.4965 -0.2340 11 6 6.2314 4.2115 1.8340 12 6 7.6735 3.6944 -0.1159 13 6 8.4478 2.5911 0.1936 14 6 9.7522 2.5137 -0.2534 15 6 10.2897 3.5505 -1.0049 16 8 11.5731 3.4797 -1.4416 17 6 11.9961 4.4632 -2.2611 18 1 11.3504 5.3018 -2.4762 19 6 13.2600 4.3979 -2.8276 20 7 13.6728 5.3579 -3.6268 21 14 14.3769 2.9479 -2.4549 22 1 14.1449 1.8746 -3.4546 23 1 15.7945 3.3858 -2.5185 24 1 14.0793 2.4305 -1.0951 25 6 9.5114 4.6596 -1.3094 26 6 8.2060 4.7287 -0.8638 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.6885 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 5.0819 0.4505 -1.3085 33 1 3.6792 1.1533 -2.1499 34 1 3.5522 -0.4549 -1.3978 35 1 3.9142 3.1647 -0.7601 36 1 3.7609 3.0734 1.0108 37 1 5.8659 1.8584 1.0211 38 1 6.7805 3.4878 2.4363 39 1 6.7003 5.1913 1.9254 40 1 5.2008 4.2682 2.1842 41 1 8.0304 1.7869 0.7815 42 1 10.3549 1.6499 -0.0151 43 1 14.5571 5.3125 -4.0229 44 1 9.9267 5.4677 -1.8933 45 1 7.6001 5.5908 -1.1006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045657466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:32 Heat of formation + Delta-G solvation = -77.303848 kcal Electronic energy + Delta-G solvation = -22880.041476 eV Core-core repulsion = 19476.221891 eV Total energy + Delta-G solvation = -3403.819586 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92779 -39.52511 -38.87391 -37.34815 -35.03681 -34.35687 -31.84859 -31.14009 -29.33494 -28.13489 -27.24305 -26.96977 -25.24903 -23.86283 -23.34093 -21.58862 -21.01977 -19.69115 -19.06825 -17.51590 -16.97757 -16.78208 -16.61359 -16.30629 -15.90839 -15.70092 -15.61270 -15.44067 -15.06179 -14.79625 -14.34041 -14.11285 -14.07705 -13.89669 -13.82287 -13.46558 -13.24639 -13.02613 -12.84718 -12.61126 -12.43587 -12.39414 -12.15520 -12.05865 -11.87668 -11.81901 -11.55758 -11.52124 -11.22892 -10.87490 -10.57410 -9.74102 -9.24054 -8.89518 -8.48626 -6.20553 0.62934 0.71577 1.31410 1.36003 1.52342 2.29079 2.71255 2.81632 3.08963 3.20660 3.48055 3.91523 4.02096 4.05480 4.13730 4.18677 4.23598 4.40660 4.41280 4.49694 4.52015 4.56039 4.61314 4.63910 4.74025 4.75986 4.85950 4.87874 4.91015 4.93995 5.02757 5.07980 5.20383 5.28199 5.31238 5.37964 5.45556 5.53428 5.61324 5.79098 5.84677 5.95041 6.19483 6.28587 6.32459 6.57593 6.86081 7.62427 8.63164 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028829 B = 0.002567 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.022320 B =10905.929280 C =11287.762827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.066 3.934 4 C -0.082 4.082 5 H 0.075 0.925 6 C -0.131 4.131 7 C 0.072 3.928 8 N -0.686 5.686 9 C 0.144 3.856 10 H 0.084 0.916 11 C -0.171 4.171 12 C -0.131 4.131 13 C -0.048 4.048 14 C -0.194 4.194 15 C 0.114 3.886 16 O -0.248 6.248 17 C -0.397 4.397 18 H 0.080 0.920 19 C 0.007 3.993 20 N -0.925 5.925 21 Si 0.972 3.028 22 H -0.267 1.267 23 H -0.267 1.267 24 H -0.263 1.263 25 C -0.237 4.237 26 C -0.074 4.074 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.346 0.654 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.148 0.852 42 H 0.124 0.876 43 H 0.284 0.716 44 H 0.105 0.895 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.496 -7.636 11.201 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.011 4.011 4 C -0.101 4.101 5 H 0.093 0.907 6 C -0.189 4.189 7 C -0.057 4.057 8 N -0.317 5.317 9 C 0.034 3.966 10 H 0.103 0.897 11 C -0.230 4.230 12 C -0.132 4.132 13 C -0.066 4.066 14 C -0.213 4.213 15 C 0.066 3.934 16 O -0.156 6.156 17 C -0.474 4.474 18 H 0.097 0.903 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.794 3.206 22 H -0.192 1.192 23 H -0.192 1.192 24 H -0.188 1.188 25 C -0.256 4.256 26 C -0.092 4.092 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.166 0.834 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.165 0.835 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.123 0.877 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -24.971 -7.919 10.437 28.199 hybrid contribution 0.501 0.559 0.350 0.828 sum -24.470 -7.361 10.787 27.737 Atomic orbital electron populations 1.22896 0.79776 1.03615 1.00738 1.87843 1.21152 1.28839 1.95569 1.22579 0.93290 0.84349 1.00859 1.21026 0.92821 0.96749 0.99489 0.90675 1.21603 1.01347 0.99716 0.96190 1.21873 0.87071 0.95700 1.01090 1.60432 1.08402 1.12552 1.50322 1.20151 0.89931 0.90852 0.95618 0.89740 1.22426 1.02343 1.02303 0.95881 1.19691 0.96538 0.95020 1.01953 1.20734 0.90917 0.97590 0.97397 1.20525 0.97585 0.98399 1.04789 1.19674 0.83883 0.95127 0.94758 1.83510 1.24622 1.47810 1.59694 1.20698 1.01809 1.00724 1.24121 0.90282 1.25293 0.98020 1.00863 0.94899 1.69733 1.21074 1.34333 1.31452 0.85202 0.77399 0.78379 0.79628 1.19156 1.19155 1.18777 1.21234 0.96796 0.99661 1.07916 1.20898 0.93288 0.98873 0.96151 0.88873 0.93118 0.93449 0.92183 0.92816 0.92478 0.93546 0.93472 0.91105 0.93618 0.83414 0.92100 0.92412 0.91069 0.83484 0.85765 0.90644 0.87707 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.15 10.24 -148.98 -1.53 -8.68 16 3 C 0.07 0.92 5.32 71.98 0.38 1.30 16 4 C -0.08 -1.26 2.77 -10.79 -0.03 -1.29 16 5 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 6 C -0.13 -2.49 8.98 71.98 0.65 -1.85 16 7 C 0.07 1.05 4.87 86.31 0.42 1.47 16 8 N -0.69 -12.43 5.16 -495.46 -2.56 -14.99 16 9 C 0.14 2.95 2.78 44.17 0.12 3.08 16 10 H 0.08 1.68 7.66 -2.39 -0.02 1.66 16 11 C -0.17 -2.88 9.14 71.98 0.66 -2.23 16 12 C -0.13 -3.83 4.96 -19.84 -0.10 -3.93 16 13 C -0.05 -1.48 9.31 22.25 0.21 -1.27 16 14 C -0.19 -7.58 9.99 22.39 0.22 -7.35 16 15 C 0.11 5.48 6.65 22.58 0.15 5.63 16 16 O -0.25 -13.87 8.59 -22.70 -0.19 -14.07 16 17 C -0.40 -23.97 9.95 67.92 0.68 -23.30 16 18 H 0.08 5.00 5.44 -2.91 -0.02 4.99 16 19 C 0.01 0.43 5.49 84.83 0.47 0.89 16 20 N -0.92 -56.23 13.96 21.61 0.30 -55.93 16 21 Si 0.97 46.47 28.62 68.60 1.96 48.44 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 25 C -0.24 -10.64 9.17 22.39 0.21 -10.44 16 26 C -0.07 -2.56 9.66 22.25 0.21 -2.35 16 27 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.06 1.23 7.75 -2.39 -0.02 1.22 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 0.94 7.82 -2.39 -0.02 0.92 16 35 H 0.07 1.11 8.06 -2.39 -0.02 1.09 16 36 H 0.05 0.54 7.44 -2.39 -0.02 0.52 16 37 H 0.35 5.52 7.81 -89.69 -0.70 4.82 16 38 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 39 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.07 0.93 7.45 -2.39 -0.02 0.91 16 41 H 0.15 3.48 7.25 -2.91 -0.02 3.46 16 42 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 43 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16 44 H 0.11 5.20 5.64 -2.91 -0.02 5.19 16 45 H 0.13 3.86 8.03 -2.91 -0.02 3.84 16 Total: -1.00 -68.51 367.92 3.74 -64.77 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.26 Total: 20.56 kcal Atomic # 6 Polarization: -45.60 SS G_CDS: 5.49 Total: -40.11 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -2.26 Total: -70.92 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -1.72 Total: -22.75 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.96 Total: 48.44 kcal Total: -68.51 3.74 -64.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045657466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.535 kcal (2) G-P(sol) polarization free energy of solvation -68.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds