Wall clock time and date at job start Tue Mar 31 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99527 * 2 1 4 4 C 1.53004 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47272 * 54.99833 * 4 3 2 6 6 C 1.52996 * 109.47127 * 295.00195 * 4 3 2 7 7 C 1.52999 * 109.47322 * 174.99909 * 4 3 2 8 8 N 1.46899 * 109.46935 * 184.99723 * 7 4 3 9 9 C 1.46905 * 110.99892 * 179.97438 * 8 7 4 10 10 H 1.09003 * 109.46864 * 325.00639 * 9 8 7 11 11 C 1.52999 * 109.46984 * 85.00122 * 9 8 7 12 12 C 1.50698 * 109.47429 * 205.00364 * 9 8 7 13 13 C 1.38304 * 119.92928 * 319.72876 * 12 9 8 14 14 C 1.38094 * 120.06931 * 179.72634 * 13 12 9 15 15 C 1.38888 * 119.92896 * 0.54279 * 14 13 12 16 16 O 1.35755 * 120.06689 * 179.75049 * 15 14 13 17 17 C 1.34824 * 116.99229 * 174.44519 * 16 15 14 18 18 H 1.07997 * 120.01188 * 5.05192 * 17 16 15 19 19 C 1.38664 * 119.99411 * 185.05303 * 17 16 15 20 20 N 1.31549 * 119.99888 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99812 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47308 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47102 * 120.00213 * 21 19 17 24 24 H 1.48500 * 109.47267 * 240.00272 * 21 19 17 25 25 C 1.38874 * 119.85898 * 359.73047 * 15 14 13 26 26 C 1.38098 * 119.93702 * 359.97438 * 25 15 14 27 27 H 1.09006 * 109.46931 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47278 * 299.99806 * 1 2 3 29 29 H 1.08997 * 109.47769 * 60.00315 * 1 2 3 30 30 H 1.09006 * 109.47331 * 60.00304 * 3 2 1 31 31 H 1.08997 * 109.47452 * 299.99884 * 3 2 1 32 32 H 1.09004 * 109.47656 * 59.99532 * 6 4 3 33 33 H 1.08999 * 109.47447 * 180.02562 * 6 4 3 34 34 H 1.09000 * 109.47263 * 299.99858 * 6 4 3 35 35 H 1.09003 * 109.47032 * 65.00011 * 7 4 3 36 36 H 1.08993 * 109.47287 * 305.00314 * 7 4 3 37 37 H 1.00895 * 111.00032 * 56.04950 * 8 7 4 38 38 H 1.09002 * 109.47540 * 300.00506 * 11 9 8 39 39 H 1.09003 * 109.46905 * 59.99980 * 11 9 8 40 40 H 1.08995 * 109.47192 * 180.02562 * 11 9 8 41 41 H 1.08003 * 119.96144 * 359.97438 * 13 12 9 42 42 H 1.08000 * 120.03878 * 180.27020 * 14 13 12 43 43 H 0.97002 * 120.00109 * 179.97438 * 20 19 17 44 44 H 1.08009 * 120.03247 * 179.97438 * 25 15 14 45 45 H 1.07994 * 119.96961 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 1 3.8508 0.5687 -0.8427 6 6 3.9962 0.5366 1.3063 7 6 4.1571 2.5772 -0.1264 8 7 5.6158 2.4529 -0.2473 9 6 6.2482 3.7731 -0.3709 10 1 5.5970 4.4359 -0.9408 11 6 6.4796 4.3602 1.0229 12 6 7.5691 3.6328 -1.0826 13 6 8.3951 2.5603 -0.7993 14 6 9.6036 2.4258 -1.4539 15 6 9.9943 3.3752 -2.3893 16 8 11.1841 3.2485 -3.0308 17 6 11.4506 4.1389 -4.0074 18 1 10.7701 4.9566 -4.1933 19 6 12.5987 4.0047 -4.7734 20 7 13.4274 3.0084 -4.5474 21 14 12.9677 5.2379 -6.1270 22 1 11.8870 6.2551 -6.1780 23 1 14.2636 5.9068 -5.8473 24 1 13.0461 4.5325 -7.4314 25 6 9.1652 4.4540 -2.6674 26 6 7.9551 4.5796 -2.0139 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.5533 -0.4553 1.3960 33 1 5.0828 0.4511 1.3061 34 1 3.6809 1.1527 2.1484 35 1 3.9147 3.1646 0.7592 36 1 3.7601 3.0738 -1.0116 37 1 5.8649 1.8589 -1.0239 38 1 5.5242 4.4616 1.5377 39 1 7.1308 3.6973 1.5928 40 1 6.9484 5.3399 0.9312 41 1 8.0927 1.8249 -0.0683 42 1 10.2462 1.5857 -1.2355 43 1 14.2303 2.9143 -5.0834 44 1 9.4665 5.1941 -3.3940 45 1 7.3098 5.4181 -2.2300 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045657468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:35 Heat of formation + Delta-G solvation = -61.780329 kcal Electronic energy + Delta-G solvation = -22829.736567 eV Core-core repulsion = 19426.590131 eV Total energy + Delta-G solvation = -3403.146435 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.26999 -38.59164 -37.54382 -36.04069 -33.89522 -32.23668 -30.30845 -29.92820 -27.93060 -27.52199 -26.27625 -25.40896 -24.48580 -22.27066 -21.76083 -20.48624 -19.83606 -17.93458 -17.03458 -16.75802 -16.31936 -15.71666 -15.43452 -15.21619 -14.63134 -14.48015 -14.08537 -13.88429 -13.68866 -13.54807 -13.13862 -12.81674 -12.68859 -12.50472 -12.37382 -12.28150 -11.93165 -11.81496 -11.67441 -11.42321 -11.29567 -11.08754 -10.98363 -10.79928 -10.65440 -10.61280 -10.42291 -10.26183 -9.95251 -9.33269 -8.83481 -8.35606 -8.16442 -7.17563 -6.45530 -4.04283 2.23143 2.30510 3.11525 3.13038 3.18561 3.40215 3.96120 4.31193 4.56564 4.65320 4.82039 4.88077 5.00210 5.05273 5.08852 5.11002 5.21394 5.26967 5.33074 5.33400 5.46404 5.50524 5.61565 5.69430 5.70130 5.76857 5.88678 5.95986 6.00456 6.04358 6.15135 6.24237 6.34149 6.40225 6.47835 6.73831 6.84908 6.88712 7.04650 7.06402 7.27183 7.42332 7.44136 7.54798 7.83871 7.99700 9.00240 9.70917 10.72577 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.002465 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.104866 B =11357.105621 C =11521.543000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.066 3.934 4 C -0.089 4.089 5 H 0.078 0.922 6 C -0.133 4.133 7 C 0.066 3.934 8 N -0.680 5.680 9 C 0.143 3.857 10 H 0.040 0.960 11 C -0.131 4.131 12 C -0.193 4.193 13 C -0.055 4.055 14 C -0.195 4.195 15 C 0.155 3.845 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.235 4.235 26 C -0.065 4.065 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.027 0.973 37 H 0.346 0.654 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.310 -0.734 8.701 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.011 4.011 4 C -0.107 4.107 5 H 0.096 0.904 6 C -0.191 4.191 7 C -0.064 4.064 8 N -0.312 5.312 9 C 0.034 3.966 10 H 0.058 0.942 11 C -0.189 4.189 12 C -0.194 4.194 13 C -0.073 4.073 14 C -0.214 4.214 15 C 0.101 3.899 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.497 5.497 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.254 4.254 26 C -0.084 4.084 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.165 0.835 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.678 -1.175 9.308 22.706 hybrid contribution -0.319 1.236 -1.685 2.114 sum -20.997 0.061 7.623 22.338 Atomic orbital electron populations 1.22727 0.81255 1.02680 0.99845 1.87885 1.19430 1.28044 1.95373 1.22568 0.94060 0.84520 0.99946 1.21100 0.92043 0.97054 1.00544 0.90389 1.21649 1.02272 0.99853 0.95293 1.21915 0.88621 0.95525 1.00334 1.60554 1.06955 1.13619 1.50074 1.20134 0.92080 0.89067 0.95297 0.94245 1.21768 1.00799 1.00292 0.96083 1.19262 0.97622 0.99318 1.03201 1.20495 0.92572 0.96687 0.97558 1.20263 0.98625 1.00780 1.01754 1.19431 0.85995 0.92713 0.91733 1.83983 1.28446 1.51319 1.44394 1.21367 1.08218 1.06711 1.10476 0.89059 1.25295 0.95201 0.97781 0.98313 1.70045 1.11657 1.29083 1.38919 0.85647 0.78796 0.79311 0.79667 1.19145 1.20149 1.20138 1.21115 0.96696 1.01395 1.06220 1.20578 0.95586 0.97204 0.95057 0.89685 0.94195 0.94197 0.93301 0.93550 0.92834 0.91196 0.93448 0.91017 0.95479 0.83511 0.93622 0.91953 0.92746 0.86244 0.86574 0.92068 0.85659 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.93 10.24 -35.23 -0.36 -4.29 16 3 C 0.07 0.58 5.32 37.16 0.20 0.78 16 4 C -0.09 -0.85 2.77 -90.62 -0.25 -1.10 16 5 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.13 -1.32 8.98 37.16 0.33 -0.99 16 7 C 0.07 0.65 4.87 -3.83 -0.02 0.63 16 8 N -0.68 -8.05 5.15 -107.95 -0.56 -8.60 16 9 C 0.14 1.89 2.81 -68.86 -0.19 1.70 16 10 H 0.04 0.51 7.66 -51.93 -0.40 0.11 16 11 C -0.13 -1.62 9.39 37.16 0.35 -1.28 16 12 C -0.19 -3.19 4.71 -104.58 -0.49 -3.68 16 13 C -0.05 -0.96 9.00 -39.61 -0.36 -1.32 16 14 C -0.19 -4.10 9.99 -39.39 -0.39 -4.50 16 15 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 16 O -0.18 -5.10 9.76 0.05 0.00 -5.09 16 17 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 18 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -25.34 13.67 55.48 0.76 -24.58 16 21 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.23 -5.08 9.17 -39.40 -0.36 -5.44 16 26 C -0.07 -1.18 9.66 -39.61 -0.38 -1.57 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.55 7.82 -51.93 -0.41 0.14 16 33 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.69 7.44 -51.93 -0.39 0.30 16 36 H 0.03 0.27 8.05 -51.93 -0.42 -0.15 16 37 H 0.35 4.33 7.99 -39.29 -0.31 4.01 16 38 H 0.04 0.49 7.45 -51.93 -0.39 0.11 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.12 1.86 7.72 -52.48 -0.41 1.46 16 42 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 43 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.13 2.73 5.64 -52.48 -0.30 2.44 16 45 H 0.10 1.61 8.03 -52.49 -0.42 1.19 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -30.11 369.42 -7.61 -37.72 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.47 Total: 5.40 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -0.52 Total: -21.65 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.20 Total: -33.18 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.36 Total: -9.38 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.11 -7.61 -37.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045657468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.061 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds