Wall clock time and date at job start Tue Mar 31 2020 06:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99527 * 2 1 4 4 C 1.53004 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47272 * 54.99833 * 4 3 2 6 6 C 1.52996 * 109.47127 * 295.00195 * 4 3 2 7 7 C 1.52999 * 109.47322 * 174.99909 * 4 3 2 8 8 N 1.46899 * 109.46935 * 184.99723 * 7 4 3 9 9 C 1.46905 * 110.99892 * 179.97438 * 8 7 4 10 10 H 1.09003 * 109.46864 * 325.00639 * 9 8 7 11 11 C 1.52999 * 109.46984 * 85.00122 * 9 8 7 12 12 C 1.50698 * 109.47429 * 205.00364 * 9 8 7 13 13 C 1.38304 * 119.92928 * 319.72876 * 12 9 8 14 14 C 1.38094 * 120.06931 * 179.72634 * 13 12 9 15 15 C 1.38888 * 119.92896 * 0.54279 * 14 13 12 16 16 O 1.35755 * 120.06689 * 179.75049 * 15 14 13 17 17 C 1.34824 * 116.99229 * 174.44519 * 16 15 14 18 18 H 1.07997 * 120.01188 * 5.05192 * 17 16 15 19 19 C 1.38664 * 119.99411 * 185.05303 * 17 16 15 20 20 N 1.31549 * 119.99888 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99812 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47308 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47102 * 120.00213 * 21 19 17 24 24 H 1.48500 * 109.47267 * 240.00272 * 21 19 17 25 25 C 1.38874 * 119.85898 * 359.73047 * 15 14 13 26 26 C 1.38098 * 119.93702 * 359.97438 * 25 15 14 27 27 H 1.09006 * 109.46931 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47278 * 299.99806 * 1 2 3 29 29 H 1.08997 * 109.47769 * 60.00315 * 1 2 3 30 30 H 1.09006 * 109.47331 * 60.00304 * 3 2 1 31 31 H 1.08997 * 109.47452 * 299.99884 * 3 2 1 32 32 H 1.09004 * 109.47656 * 59.99532 * 6 4 3 33 33 H 1.08999 * 109.47447 * 180.02562 * 6 4 3 34 34 H 1.09000 * 109.47263 * 299.99858 * 6 4 3 35 35 H 1.09003 * 109.47032 * 65.00011 * 7 4 3 36 36 H 1.08993 * 109.47287 * 305.00314 * 7 4 3 37 37 H 1.00895 * 111.00032 * 56.04950 * 8 7 4 38 38 H 1.09002 * 109.47540 * 300.00506 * 11 9 8 39 39 H 1.09003 * 109.46905 * 59.99980 * 11 9 8 40 40 H 1.08995 * 109.47192 * 180.02562 * 11 9 8 41 41 H 1.08003 * 119.96144 * 359.97438 * 13 12 9 42 42 H 1.08000 * 120.03878 * 180.27020 * 14 13 12 43 43 H 0.97002 * 120.00109 * 179.97438 * 20 19 17 44 44 H 1.08009 * 120.03247 * 179.97438 * 25 15 14 45 45 H 1.07994 * 119.96961 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 1 3.8508 0.5687 -0.8427 6 6 3.9962 0.5366 1.3063 7 6 4.1571 2.5772 -0.1264 8 7 5.6158 2.4529 -0.2473 9 6 6.2482 3.7731 -0.3709 10 1 5.5970 4.4359 -0.9408 11 6 6.4796 4.3602 1.0229 12 6 7.5691 3.6328 -1.0826 13 6 8.3951 2.5603 -0.7993 14 6 9.6036 2.4258 -1.4539 15 6 9.9943 3.3752 -2.3893 16 8 11.1841 3.2485 -3.0308 17 6 11.4506 4.1389 -4.0074 18 1 10.7701 4.9566 -4.1933 19 6 12.5987 4.0047 -4.7734 20 7 13.4274 3.0084 -4.5474 21 14 12.9677 5.2379 -6.1270 22 1 11.8870 6.2551 -6.1780 23 1 14.2636 5.9068 -5.8473 24 1 13.0461 4.5325 -7.4314 25 6 9.1652 4.4540 -2.6674 26 6 7.9551 4.5796 -2.0139 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.5533 -0.4553 1.3960 33 1 5.0828 0.4511 1.3061 34 1 3.6809 1.1527 2.1484 35 1 3.9147 3.1646 0.7592 36 1 3.7601 3.0738 -1.0116 37 1 5.8649 1.8589 -1.0239 38 1 5.5242 4.4616 1.5377 39 1 7.1308 3.6973 1.5928 40 1 6.9484 5.3399 0.9312 41 1 8.0927 1.8249 -0.0683 42 1 10.2462 1.5857 -1.2355 43 1 14.2303 2.9143 -5.0834 44 1 9.4665 5.1941 -3.3940 45 1 7.3098 5.4181 -2.2300 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045657468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:34 Heat of formation + Delta-G solvation = -80.559603 kcal Electronic energy + Delta-G solvation = -22830.550897 eV Core-core repulsion = 19426.590131 eV Total energy + Delta-G solvation = -3403.960766 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.88017 -39.47889 -38.83587 -37.25834 -34.98732 -34.16616 -31.84328 -31.11938 -29.31912 -28.14810 -27.36887 -26.98654 -25.34911 -23.79956 -23.20650 -21.40344 -21.09095 -19.75724 -18.82693 -17.49209 -17.13691 -16.73342 -16.55081 -16.26421 -16.13639 -15.79108 -15.52837 -15.34170 -15.10226 -14.71246 -14.41297 -14.07905 -13.94229 -13.81307 -13.52194 -13.23454 -13.18368 -12.97720 -12.89104 -12.51202 -12.45332 -12.36683 -12.22700 -12.10457 -11.89002 -11.72767 -11.56473 -11.45182 -11.16797 -10.79244 -10.58024 -9.76350 -9.28899 -8.90307 -8.47259 -6.15276 0.61353 0.69429 1.34648 1.43038 1.53011 2.17394 2.72467 2.83889 3.16729 3.43409 3.53201 3.87267 3.97987 4.08805 4.10994 4.21205 4.24149 4.42907 4.49323 4.50944 4.53070 4.59345 4.62678 4.68948 4.74217 4.77097 4.85542 4.87324 4.97727 5.00065 5.05646 5.14165 5.16285 5.22751 5.30390 5.38270 5.48107 5.54421 5.59241 5.72233 5.74501 6.03358 6.19773 6.25024 6.30350 6.49454 6.97564 7.79305 8.76279 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.002465 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.104866 B =11357.105621 C =11521.543000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.067 3.933 4 C -0.085 4.085 5 H 0.065 0.935 6 C -0.128 4.128 7 C 0.070 3.930 8 N -0.683 5.683 9 C 0.147 3.853 10 H 0.055 0.945 11 C -0.129 4.129 12 C -0.164 4.164 13 C -0.044 4.044 14 C -0.206 4.206 15 C 0.113 3.887 16 O -0.234 6.234 17 C -0.412 4.412 18 H 0.102 0.898 19 C -0.025 4.025 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.251 1.251 23 H -0.269 1.269 24 H -0.269 1.269 25 C -0.243 4.243 26 C -0.064 4.064 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.034 0.966 37 H 0.342 0.658 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.146 0.854 42 H 0.110 0.890 43 H 0.272 0.728 44 H 0.117 0.883 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.659 0.827 9.489 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.010 4.010 4 C -0.104 4.104 5 H 0.083 0.917 6 C -0.185 4.185 7 C -0.059 4.059 8 N -0.314 5.314 9 C 0.038 3.962 10 H 0.073 0.927 11 C -0.187 4.187 12 C -0.165 4.165 13 C -0.063 4.063 14 C -0.225 4.225 15 C 0.063 3.937 16 O -0.140 6.140 17 C -0.488 4.488 18 H 0.119 0.881 19 C -0.222 4.222 20 N -0.559 5.559 21 Si 0.839 3.161 22 H -0.175 1.175 23 H -0.194 1.194 24 H -0.194 1.194 25 C -0.262 4.262 26 C -0.082 4.082 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.160 0.840 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.163 0.837 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.135 0.865 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.093 0.391 10.136 26.141 hybrid contribution 0.380 0.676 -1.684 1.854 sum -23.712 1.067 8.452 25.196 Atomic orbital electron populations 1.22896 0.79747 1.03624 1.00760 1.87845 1.21196 1.28849 1.95570 1.22575 0.93234 0.84344 1.00864 1.21039 0.92914 0.96693 0.99754 0.91653 1.21582 1.01446 0.99681 0.95823 1.21919 0.87098 0.95750 1.01100 1.60562 1.08401 1.12617 1.49867 1.20155 0.90116 0.90244 0.95680 0.92721 1.21743 1.01869 0.99893 0.95215 1.19759 0.98495 0.97228 1.00978 1.20763 0.91028 0.97464 0.97011 1.20492 1.00014 1.00308 1.01733 1.19962 0.86030 0.94741 0.92957 1.83946 1.31090 1.52839 1.46155 1.21851 1.08887 1.07171 1.10910 0.88120 1.26608 0.94683 1.00036 1.00914 1.70191 1.12746 1.31914 1.41092 0.84515 0.79022 0.76694 0.75880 1.17455 1.19354 1.19362 1.21215 0.97807 1.00542 1.06642 1.20940 0.94455 0.98474 0.94329 0.88876 0.93111 0.93395 0.92151 0.92791 0.93612 0.92222 0.92740 0.89953 0.94759 0.83956 0.91446 0.92863 0.92735 0.83670 0.87182 0.91864 0.86483 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.60 10.24 -148.98 -1.53 -9.12 16 3 C 0.07 1.00 5.32 71.98 0.38 1.38 16 4 C -0.09 -1.42 2.77 -10.79 -0.03 -1.45 16 5 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 6 C -0.13 -2.27 8.98 71.98 0.65 -1.63 16 7 C 0.07 1.13 4.87 86.30 0.42 1.55 16 8 N -0.68 -13.74 5.15 -495.45 -2.55 -16.29 16 9 C 0.15 3.27 2.81 44.17 0.12 3.39 16 10 H 0.05 1.12 7.66 -2.39 -0.02 1.10 16 11 C -0.13 -2.65 9.39 71.98 0.68 -1.97 16 12 C -0.16 -4.93 4.71 -19.83 -0.09 -5.03 16 13 C -0.04 -1.49 9.00 22.25 0.20 -1.29 16 14 C -0.21 -8.87 9.99 22.39 0.22 -8.65 16 15 C 0.11 5.69 6.65 22.58 0.15 5.84 16 16 O -0.23 -14.23 9.76 -22.74 -0.22 -14.45 16 17 C -0.41 -24.20 9.49 67.92 0.64 -23.56 16 18 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 19 C -0.03 -1.44 5.49 84.84 0.47 -0.98 16 20 N -0.92 -57.07 13.67 21.62 0.30 -56.78 16 21 Si 1.02 43.15 29.55 68.60 2.03 45.18 16 22 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 C -0.24 -10.55 9.17 22.39 0.21 -10.34 16 26 C -0.06 -2.14 9.66 22.25 0.21 -1.93 16 27 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.04 0.88 7.82 -2.38 -0.02 0.86 16 33 H 0.06 1.17 7.75 -2.39 -0.02 1.15 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 1.20 7.44 -2.39 -0.02 1.18 16 36 H 0.03 0.53 8.05 -2.39 -0.02 0.51 16 37 H 0.34 7.53 7.99 -89.70 -0.72 6.81 16 38 H 0.07 1.13 7.45 -2.39 -0.02 1.11 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.15 4.16 7.72 -2.91 -0.02 4.13 16 42 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16 45 H 0.14 3.73 8.03 -2.91 -0.02 3.71 16 Total: -1.00 -69.69 369.42 3.75 -65.94 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.25 Total: 28.63 kcal Atomic # 6 Polarization: -48.59 SS G_CDS: 5.48 Total: -43.11 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -2.26 Total: -73.07 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -1.75 Total: -23.57 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -69.69 3.75 -65.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045657468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.616 kcal (2) G-P(sol) polarization free energy of solvation -69.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds