Wall clock time and date at job start Tue Mar 31 2020 06:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00110 * 2 1 4 4 C 1.53004 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46841 * 304.99681 * 4 3 2 6 6 C 1.52998 * 109.47151 * 64.99853 * 4 3 2 7 7 C 1.52995 * 109.47044 * 184.99824 * 4 3 2 8 8 N 1.46906 * 109.46948 * 174.99883 * 7 4 3 9 9 C 1.46898 * 110.99776 * 179.97438 * 8 7 4 10 10 H 1.08998 * 109.47343 * 35.00054 * 9 8 7 11 11 C 1.52996 * 109.47234 * 275.00154 * 9 8 7 12 12 C 1.50699 * 109.47179 * 154.99998 * 9 8 7 13 13 C 1.38299 * 119.92992 * 39.72656 * 12 9 8 14 14 C 1.38099 * 120.07027 * 179.72675 * 13 12 9 15 15 C 1.38879 * 119.92788 * 0.54760 * 14 13 12 16 16 O 1.35759 * 120.06965 * 179.74693 * 15 14 13 17 17 C 1.34821 * 117.00013 * 174.44237 * 16 15 14 18 18 H 1.08003 * 119.99990 * 5.05160 * 17 16 15 19 19 C 1.38650 * 120.00012 * 185.05774 * 17 16 15 20 20 N 1.31560 * 119.99916 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00367 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46867 * 89.99726 * 21 19 17 23 23 H 1.48502 * 109.47390 * 209.99922 * 21 19 17 24 24 H 1.48498 * 109.47203 * 330.00312 * 21 19 17 25 25 C 1.38882 * 119.86456 * 359.72556 * 15 14 13 26 26 C 1.38099 * 119.92722 * 0.02562 * 25 15 14 27 27 H 1.09004 * 109.47162 * 299.99882 * 1 2 3 28 28 H 1.09001 * 109.46994 * 59.99945 * 1 2 3 29 29 H 1.08997 * 109.46982 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47304 * 59.99690 * 3 2 1 31 31 H 1.09003 * 109.46642 * 299.99778 * 3 2 1 32 32 H 1.08997 * 109.47177 * 180.02562 * 6 4 3 33 33 H 1.09005 * 109.46876 * 299.99791 * 6 4 3 34 34 H 1.08998 * 109.47406 * 59.99607 * 6 4 3 35 35 H 1.09003 * 109.47245 * 54.99833 * 7 4 3 36 36 H 1.09003 * 109.47458 * 295.00042 * 7 4 3 37 37 H 1.00899 * 110.99750 * 56.04952 * 8 7 4 38 38 H 1.08998 * 109.47695 * 60.00112 * 11 9 8 39 39 H 1.09003 * 109.47313 * 180.02562 * 11 9 8 40 40 H 1.09008 * 109.47159 * 299.99765 * 11 9 8 41 41 H 1.08006 * 119.96684 * 359.97438 * 13 12 9 42 42 H 1.08002 * 120.03857 * 180.26624 * 14 13 12 43 43 H 0.97003 * 120.00145 * 180.02562 * 20 19 17 44 44 H 1.07994 * 120.03586 * 179.97438 * 25 15 14 45 45 H 1.07999 * 119.96079 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8514 0.5683 0.8410 6 6 3.9952 0.5369 -1.3083 7 6 4.1574 2.5768 0.1250 8 7 5.6162 2.4525 0.2448 9 6 6.2488 3.7726 0.3671 10 1 5.5983 4.4358 0.9372 11 6 6.4791 4.3589 -1.0272 12 6 7.5704 3.6325 1.0777 13 6 8.3908 2.5537 0.8026 14 6 9.6050 2.4255 1.4479 15 6 9.9967 3.3752 2.3824 16 8 11.1874 3.2493 3.0223 17 6 11.5584 4.2630 3.8300 18 1 10.8827 5.0864 4.0084 19 6 12.8076 4.2484 4.4316 20 7 13.6305 3.2452 4.2146 21 14 13.3221 5.6532 5.5501 22 1 12.9207 5.3465 6.9466 23 1 14.7958 5.8238 5.4848 24 1 12.6587 6.9062 5.1083 25 6 9.1680 4.4544 2.6607 26 6 7.9574 4.5797 2.0082 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 5.0818 0.4504 -1.3085 33 1 3.5521 -0.4550 -1.3977 34 1 3.6792 1.1532 -2.1499 35 1 3.7610 3.0732 1.0109 36 1 3.9143 3.1647 -0.7601 37 1 6.0004 1.9385 -0.5338 38 1 5.5233 4.4603 -1.5412 39 1 6.9489 5.3383 -0.9365 40 1 7.1298 3.6956 -1.5973 41 1 8.0835 1.8129 0.0793 42 1 10.2472 1.5851 1.2295 43 1 14.5043 3.2348 4.6357 44 1 9.4696 5.1944 3.3872 45 1 7.3127 5.4190 2.2239 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045657470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:37 Heat of formation + Delta-G solvation = -60.003730 kcal Electronic energy + Delta-G solvation = -22821.661815 eV Core-core repulsion = 19418.592419 eV Total energy + Delta-G solvation = -3403.069396 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.23266 -38.62100 -37.57637 -36.08545 -33.96883 -32.19011 -30.24235 -29.84344 -27.86864 -27.57855 -26.41318 -25.36142 -24.43865 -22.50595 -21.76046 -20.39904 -19.92850 -17.87704 -17.00884 -16.84689 -16.30772 -15.69893 -15.59241 -14.90940 -14.71740 -14.44083 -14.06385 -13.94410 -13.56852 -13.50665 -13.11020 -12.97373 -12.85414 -12.66809 -12.49036 -12.35507 -12.07048 -11.81861 -11.64533 -11.38708 -11.23424 -11.15109 -11.06019 -10.84392 -10.65151 -10.55840 -10.36970 -10.34314 -9.96291 -9.27034 -8.78009 -8.33781 -8.08526 -7.08478 -6.40186 -3.98851 2.30296 2.39824 3.15332 3.16003 3.20842 3.39319 4.00502 4.29181 4.62181 4.65005 4.75697 4.86629 4.99311 5.01052 5.08172 5.15495 5.16033 5.23712 5.31967 5.34565 5.36908 5.42854 5.43467 5.54903 5.70764 5.71799 5.78709 5.82365 5.87408 6.00332 6.09706 6.16436 6.18573 6.29673 6.49264 6.78168 6.84890 6.92565 7.07282 7.13604 7.36398 7.43352 7.49173 7.52077 7.90579 8.05169 9.05649 9.77429 10.78087 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031146 B = 0.002422 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.774424 B =11557.303398 C =11647.950366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.067 3.933 4 C -0.091 4.091 5 H 0.090 0.910 6 C -0.145 4.145 7 C 0.066 3.934 8 N -0.678 5.678 9 C 0.141 3.859 10 H 0.075 0.925 11 C -0.176 4.176 12 C -0.166 4.166 13 C -0.053 4.053 14 C -0.194 4.194 15 C 0.153 3.847 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.233 4.233 26 C -0.068 4.068 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.340 0.660 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.269 0.731 44 H 0.125 0.875 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.838 -0.790 -10.052 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.010 4.010 4 C -0.109 4.109 5 H 0.108 0.892 6 C -0.203 4.203 7 C -0.063 4.063 8 N -0.309 5.309 9 C 0.032 3.968 10 H 0.093 0.907 11 C -0.235 4.235 12 C -0.168 4.168 13 C -0.071 4.071 14 C -0.214 4.214 15 C 0.100 3.900 16 O -0.084 6.084 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.166 4.166 20 N -0.500 5.500 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.253 4.253 26 C -0.087 4.087 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.160 0.840 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.329 -1.313 -9.300 23.306 hybrid contribution -0.090 1.361 -0.283 1.393 sum -21.419 0.048 -9.583 23.465 Atomic orbital electron populations 1.22728 0.81228 1.02691 0.99855 1.87883 1.19453 1.28047 1.95377 1.22547 0.93931 0.84535 0.99986 1.21120 0.92202 0.97385 1.00231 0.89154 1.21792 1.01317 1.01131 0.96033 1.21888 0.89009 0.95254 1.00165 1.60608 1.02855 1.17920 1.49526 1.20183 0.93370 0.88964 0.94307 0.90706 1.22496 1.00845 1.02360 0.97777 1.19065 0.96411 0.98384 1.02914 1.20303 0.92534 0.96172 0.98124 1.20212 0.98639 1.01433 1.01068 1.19393 0.86906 0.93043 0.90702 1.83979 1.29785 1.42133 1.52499 1.21305 1.00773 1.00462 1.24124 0.89163 1.25276 0.94807 0.98385 0.98146 1.70043 1.08231 1.29943 1.41734 0.85725 0.78197 0.79904 0.79664 1.19926 1.20311 1.19265 1.21102 0.96499 1.01638 1.06017 1.20532 0.95560 0.97386 0.95232 0.94125 0.94244 0.89680 0.93238 0.93522 0.92223 0.91876 0.93301 0.91012 0.95373 0.84044 0.93456 0.91835 0.92363 0.87398 0.86724 0.92110 0.85715 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.86 10.24 -35.23 -0.36 -4.22 16 3 C 0.07 0.58 5.32 37.16 0.20 0.78 16 4 C -0.09 -0.86 2.83 -90.62 -0.26 -1.11 16 5 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 6 C -0.15 -1.30 8.86 37.16 0.33 -0.97 16 7 C 0.07 0.65 4.94 -3.82 -0.02 0.63 16 8 N -0.68 -8.07 5.69 -107.95 -0.61 -8.69 16 9 C 0.14 1.84 2.79 -68.87 -0.19 1.65 16 10 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 11 C -0.18 -2.00 9.14 37.16 0.34 -1.66 16 12 C -0.17 -2.82 4.96 -104.58 -0.52 -3.34 16 13 C -0.05 -0.95 9.32 -39.61 -0.37 -1.32 16 14 C -0.19 -4.19 9.99 -39.40 -0.39 -4.58 16 15 C 0.15 3.77 6.65 -39.11 -0.26 3.51 16 16 O -0.18 -5.24 9.76 0.05 0.00 -5.24 16 17 C -0.39 -11.07 9.49 30.88 0.29 -10.77 16 18 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 19 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -25.68 13.67 55.48 0.76 -24.92 16 21 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 C -0.23 -5.15 9.17 -39.39 -0.36 -5.51 16 26 C -0.07 -1.26 9.66 -39.61 -0.38 -1.65 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.53 6.68 -51.93 -0.35 0.19 16 33 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 36 H 0.03 0.25 7.44 -51.93 -0.39 -0.13 16 37 H 0.34 3.79 6.06 -39.29 -0.24 3.55 16 38 H 0.05 0.46 7.45 -51.93 -0.39 0.07 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.67 8.13 -51.92 -0.42 0.25 16 41 H 0.11 1.66 7.23 -52.48 -0.38 1.28 16 42 H 0.11 2.41 8.06 -52.49 -0.42 1.98 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 45 H 0.10 1.62 8.03 -52.49 -0.42 1.20 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -31.22 366.76 -7.60 -38.82 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.31 Total: 5.04 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -0.58 Total: -22.08 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.14 Total: -33.61 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.36 Total: -9.46 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.22 -7.60 -38.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045657470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.181 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds