Wall clock time and date at job start Tue Mar 31 2020 06:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00110 * 2 1 4 4 C 1.53004 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46841 * 304.99681 * 4 3 2 6 6 C 1.52998 * 109.47151 * 64.99853 * 4 3 2 7 7 C 1.52995 * 109.47044 * 184.99824 * 4 3 2 8 8 N 1.46906 * 109.46948 * 174.99883 * 7 4 3 9 9 C 1.46898 * 110.99776 * 179.97438 * 8 7 4 10 10 H 1.08998 * 109.47343 * 35.00054 * 9 8 7 11 11 C 1.52996 * 109.47234 * 275.00154 * 9 8 7 12 12 C 1.50699 * 109.47179 * 154.99998 * 9 8 7 13 13 C 1.38299 * 119.92992 * 39.72656 * 12 9 8 14 14 C 1.38099 * 120.07027 * 179.72675 * 13 12 9 15 15 C 1.38879 * 119.92788 * 0.54760 * 14 13 12 16 16 O 1.35759 * 120.06965 * 179.74693 * 15 14 13 17 17 C 1.34821 * 117.00013 * 174.44237 * 16 15 14 18 18 H 1.08003 * 119.99990 * 5.05160 * 17 16 15 19 19 C 1.38650 * 120.00012 * 185.05774 * 17 16 15 20 20 N 1.31560 * 119.99916 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00367 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46867 * 89.99726 * 21 19 17 23 23 H 1.48502 * 109.47390 * 209.99922 * 21 19 17 24 24 H 1.48498 * 109.47203 * 330.00312 * 21 19 17 25 25 C 1.38882 * 119.86456 * 359.72556 * 15 14 13 26 26 C 1.38099 * 119.92722 * 0.02562 * 25 15 14 27 27 H 1.09004 * 109.47162 * 299.99882 * 1 2 3 28 28 H 1.09001 * 109.46994 * 59.99945 * 1 2 3 29 29 H 1.08997 * 109.46982 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47304 * 59.99690 * 3 2 1 31 31 H 1.09003 * 109.46642 * 299.99778 * 3 2 1 32 32 H 1.08997 * 109.47177 * 180.02562 * 6 4 3 33 33 H 1.09005 * 109.46876 * 299.99791 * 6 4 3 34 34 H 1.08998 * 109.47406 * 59.99607 * 6 4 3 35 35 H 1.09003 * 109.47245 * 54.99833 * 7 4 3 36 36 H 1.09003 * 109.47458 * 295.00042 * 7 4 3 37 37 H 1.00899 * 110.99750 * 56.04952 * 8 7 4 38 38 H 1.08998 * 109.47695 * 60.00112 * 11 9 8 39 39 H 1.09003 * 109.47313 * 180.02562 * 11 9 8 40 40 H 1.09008 * 109.47159 * 299.99765 * 11 9 8 41 41 H 1.08006 * 119.96684 * 359.97438 * 13 12 9 42 42 H 1.08002 * 120.03857 * 180.26624 * 14 13 12 43 43 H 0.97003 * 120.00145 * 180.02562 * 20 19 17 44 44 H 1.07994 * 120.03586 * 179.97438 * 25 15 14 45 45 H 1.07999 * 119.96079 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8514 0.5683 0.8410 6 6 3.9952 0.5369 -1.3083 7 6 4.1574 2.5768 0.1250 8 7 5.6162 2.4525 0.2448 9 6 6.2488 3.7726 0.3671 10 1 5.5983 4.4358 0.9372 11 6 6.4791 4.3589 -1.0272 12 6 7.5704 3.6325 1.0777 13 6 8.3908 2.5537 0.8026 14 6 9.6050 2.4255 1.4479 15 6 9.9967 3.3752 2.3824 16 8 11.1874 3.2493 3.0223 17 6 11.5584 4.2630 3.8300 18 1 10.8827 5.0864 4.0084 19 6 12.8076 4.2484 4.4316 20 7 13.6305 3.2452 4.2146 21 14 13.3221 5.6532 5.5501 22 1 12.9207 5.3465 6.9466 23 1 14.7958 5.8238 5.4848 24 1 12.6587 6.9062 5.1083 25 6 9.1680 4.4544 2.6607 26 6 7.9574 4.5797 2.0082 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 5.0818 0.4504 -1.3085 33 1 3.5521 -0.4550 -1.3977 34 1 3.6792 1.1532 -2.1499 35 1 3.7610 3.0732 1.0109 36 1 3.9143 3.1647 -0.7601 37 1 6.0004 1.9385 -0.5338 38 1 5.5233 4.4603 -1.5412 39 1 6.9489 5.3383 -0.9365 40 1 7.1298 3.6956 -1.5973 41 1 8.0835 1.8129 0.0793 42 1 10.2472 1.5851 1.2295 43 1 14.5043 3.2348 4.6357 44 1 9.4696 5.1944 3.3872 45 1 7.3127 5.4190 2.2239 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045657470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:36 Heat of formation + Delta-G solvation = -80.117357 kcal Electronic energy + Delta-G solvation = -22822.534007 eV Core-core repulsion = 19418.592419 eV Total energy + Delta-G solvation = -3403.941588 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.82860 -39.52529 -38.81255 -37.35043 -35.01749 -34.15749 -31.80469 -31.03489 -29.20769 -28.18837 -27.33617 -27.08018 -25.25656 -23.93590 -23.28197 -21.48865 -21.03666 -19.72609 -18.80042 -17.66463 -16.96370 -16.77104 -16.53034 -16.25510 -16.07406 -15.79438 -15.48061 -15.30558 -15.08230 -14.64007 -14.39126 -14.07028 -14.00888 -13.80065 -13.64835 -13.49036 -13.21098 -12.99754 -12.90778 -12.54171 -12.40396 -12.37913 -12.14585 -12.07361 -11.95824 -11.79886 -11.55322 -11.50598 -11.12764 -10.76275 -10.57694 -9.71699 -9.25324 -8.82152 -8.44971 -6.12841 0.65950 0.76873 1.35188 1.44930 1.52989 2.19205 2.72854 2.87201 3.19193 3.48759 3.56861 3.93006 4.02538 4.06635 4.11611 4.17706 4.24593 4.40092 4.42813 4.49893 4.50486 4.53670 4.60854 4.65033 4.72532 4.75436 4.81886 4.87434 4.90695 4.96109 5.02883 5.09272 5.14949 5.19339 5.29395 5.34198 5.38675 5.44205 5.64464 5.76009 5.83163 6.05964 6.21101 6.28226 6.32532 6.55556 6.99781 7.82672 8.78563 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031146 B = 0.002422 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.774424 B =11557.303398 C =11647.950366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.067 3.933 4 C -0.087 4.087 5 H 0.067 0.933 6 C -0.142 4.142 7 C 0.072 3.928 8 N -0.691 5.691 9 C 0.145 3.855 10 H 0.088 0.912 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.047 4.047 14 C -0.207 4.207 15 C 0.109 3.891 16 O -0.236 6.236 17 C -0.412 4.412 18 H 0.101 0.899 19 C -0.026 4.026 20 N -0.923 5.923 21 Si 1.020 2.980 22 H -0.264 1.264 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.242 4.242 26 C -0.068 4.068 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.345 0.655 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.140 0.860 42 H 0.108 0.892 43 H 0.272 0.728 44 H 0.117 0.883 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.091 0.854 -11.310 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.009 4.009 4 C -0.106 4.106 5 H 0.085 0.915 6 C -0.199 4.199 7 C -0.057 4.057 8 N -0.324 5.324 9 C 0.035 3.965 10 H 0.107 0.893 11 C -0.230 4.230 12 C -0.142 4.142 13 C -0.065 4.065 14 C -0.227 4.227 15 C 0.059 3.941 16 O -0.143 6.143 17 C -0.488 4.488 18 H 0.118 0.882 19 C -0.223 4.223 20 N -0.561 5.561 21 Si 0.839 3.161 22 H -0.188 1.188 23 H -0.196 1.196 24 H -0.176 1.176 25 C -0.261 4.261 26 C -0.087 4.087 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.165 0.835 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.158 0.842 42 H 0.126 0.874 43 H 0.081 0.919 44 H 0.135 0.865 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.651 0.328 -10.593 26.833 hybrid contribution 0.574 0.756 -0.105 0.954 sum -24.077 1.084 -10.698 26.369 Atomic orbital electron populations 1.22895 0.79746 1.03611 1.00768 1.87844 1.21196 1.28895 1.95574 1.22562 0.93151 0.84332 1.00903 1.21049 0.93056 0.96968 0.99541 0.91464 1.21752 1.01111 1.00836 0.96205 1.21866 0.87330 0.95474 1.01033 1.60496 1.04307 1.17274 1.50285 1.20157 0.91125 0.90066 0.95115 0.89347 1.22429 1.02220 1.01857 0.96470 1.19671 0.97587 0.96269 1.00662 1.20657 0.90984 0.97163 0.97689 1.20464 1.00143 1.00902 1.01152 1.19936 0.86684 0.95240 0.92269 1.83940 1.32258 1.43426 1.54663 1.21807 1.01559 1.00931 1.24488 0.88200 1.26608 0.94443 1.01475 0.99793 1.70195 1.08989 1.32763 1.44171 0.84577 0.77924 0.76336 0.77296 1.18848 1.19597 1.17627 1.21213 0.97677 1.00787 1.06471 1.20924 0.94435 0.98760 0.94567 0.93432 0.93055 0.88905 0.92740 0.92101 0.92374 0.92846 0.92081 0.90932 0.93514 0.83461 0.90973 0.92184 0.92540 0.84235 0.87355 0.91928 0.86549 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.53 10.24 -148.98 -1.53 -9.06 16 3 C 0.07 0.99 5.32 71.98 0.38 1.37 16 4 C -0.09 -1.44 2.83 -10.79 -0.03 -1.47 16 5 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 6 C -0.14 -2.19 8.86 71.98 0.64 -1.55 16 7 C 0.07 1.13 4.94 86.30 0.43 1.55 16 8 N -0.69 -13.89 5.69 -495.45 -2.82 -16.71 16 9 C 0.14 3.16 2.79 44.17 0.12 3.28 16 10 H 0.09 1.78 7.66 -2.39 -0.02 1.76 16 11 C -0.17 -3.11 9.14 71.98 0.66 -2.46 16 12 C -0.14 -4.37 4.96 -19.83 -0.10 -4.47 16 13 C -0.05 -1.61 9.32 22.25 0.21 -1.40 16 14 C -0.21 -9.17 9.99 22.39 0.22 -8.95 16 15 C 0.11 5.59 6.65 22.58 0.15 5.74 16 16 O -0.24 -14.63 9.76 -22.75 -0.22 -14.85 16 17 C -0.41 -24.56 9.49 67.92 0.64 -23.92 16 18 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 19 C -0.03 -1.52 5.49 84.83 0.47 -1.06 16 20 N -0.92 -57.83 13.67 21.61 0.30 -57.53 16 21 Si 1.02 43.69 29.55 68.60 2.03 45.72 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.25 -10.02 7.11 99.48 0.71 -9.32 16 25 C -0.24 -10.81 9.17 22.39 0.21 -10.60 16 26 C -0.07 -2.38 9.66 22.25 0.21 -2.16 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.90 6.68 -2.39 -0.02 0.88 16 33 H 0.05 0.93 7.82 -2.38 -0.02 0.91 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 1.16 8.06 -2.39 -0.02 1.14 16 36 H 0.05 0.60 7.44 -2.39 -0.02 0.58 16 37 H 0.35 6.38 6.06 -89.69 -0.54 5.84 16 38 H 0.07 1.01 7.45 -2.39 -0.02 0.99 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.07 8.13 -2.38 -0.02 1.05 16 41 H 0.14 3.90 7.23 -2.91 -0.02 3.88 16 42 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 43 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.12 5.28 5.64 -2.91 -0.02 5.27 16 45 H 0.14 3.84 8.03 -2.91 -0.02 3.82 16 Total: -1.00 -72.81 366.76 3.64 -69.17 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.42 Total: 27.80 kcal Atomic # 6 Polarization: -50.00 SS G_CDS: 5.46 Total: -44.54 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -2.53 Total: -74.25 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.75 Total: -23.91 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -72.81 3.64 -69.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045657470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.947 kcal (2) G-P(sol) polarization free energy of solvation -72.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds