Wall clock time and date at job start Tue Mar 31 2020 06:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00177 * 2 1 4 4 C 1.53002 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47133 * 54.99820 * 4 3 2 6 6 C 1.53004 * 109.46819 * 295.00180 * 4 3 2 7 7 C 1.52993 * 109.47218 * 174.99991 * 4 3 2 8 8 N 1.46901 * 109.47344 * 184.99909 * 7 4 3 9 9 C 1.46895 * 111.00448 * 180.02562 * 8 7 4 10 10 H 1.09001 * 109.47038 * 34.99629 * 9 8 7 11 11 C 1.53000 * 109.46770 * 274.99840 * 9 8 7 12 12 C 1.50699 * 109.47429 * 154.99902 * 9 8 7 13 13 C 1.38296 * 119.92971 * 39.72678 * 12 9 8 14 14 C 1.38098 * 120.06714 * 179.72812 * 13 12 9 15 15 C 1.38878 * 119.92961 * 0.54068 * 14 13 12 16 16 O 1.35760 * 120.06601 * 179.74866 * 15 14 13 17 17 C 1.34832 * 116.99470 * 174.44156 * 16 15 14 18 18 H 1.07999 * 120.00459 * 5.06115 * 17 16 15 19 19 C 1.38651 * 119.99691 * 185.05566 * 17 16 15 20 20 N 1.31553 * 120.00006 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00060 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46584 * 60.00059 * 21 19 17 23 23 H 1.48493 * 109.47023 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47000 * 300.00179 * 21 19 17 25 25 C 1.38868 * 119.86270 * 359.73130 * 15 14 13 26 26 C 1.38097 * 119.93347 * 359.97438 * 25 15 14 27 27 H 1.09006 * 109.47209 * 59.99819 * 1 2 3 28 28 H 1.08996 * 109.47566 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47016 * 300.00269 * 1 2 3 30 30 H 1.09000 * 109.47190 * 60.00300 * 3 2 1 31 31 H 1.08999 * 109.47129 * 300.00065 * 3 2 1 32 32 H 1.08999 * 109.46993 * 180.02562 * 6 4 3 33 33 H 1.08993 * 109.47500 * 59.99532 * 6 4 3 34 34 H 1.08999 * 109.46974 * 299.99737 * 6 4 3 35 35 H 1.08998 * 109.47287 * 304.99835 * 7 4 3 36 36 H 1.09000 * 109.47138 * 64.99839 * 7 4 3 37 37 H 1.00900 * 110.99763 * 56.03891 * 8 7 4 38 38 H 1.09003 * 109.47296 * 59.99948 * 11 9 8 39 39 H 1.09002 * 109.47062 * 179.97438 * 11 9 8 40 40 H 1.08995 * 109.47284 * 300.00158 * 11 9 8 41 41 H 1.08001 * 119.96881 * 359.97438 * 13 12 9 42 42 H 1.08007 * 120.03257 * 180.27244 * 14 13 12 43 43 H 0.97002 * 119.99930 * 180.02562 * 20 19 17 44 44 H 1.08005 * 120.03738 * 179.97438 * 25 15 14 45 45 H 1.08001 * 119.96947 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8427 6 6 3.9962 0.5363 1.3064 7 6 4.1573 2.5768 -0.1264 8 7 5.6161 2.4525 -0.2474 9 6 6.2487 3.7726 -0.3697 10 1 5.7001 4.4957 0.2338 11 6 6.2306 4.2128 -1.8349 12 6 7.6739 3.6934 0.1134 13 6 8.4443 2.5852 -0.1883 14 6 9.7524 2.5122 0.2482 15 6 10.2907 3.5481 1.0005 16 8 11.5747 3.4769 1.4354 17 6 12.0703 4.5639 2.0605 18 1 11.4282 5.4070 2.2685 19 6 13.4044 4.5992 2.4366 20 7 14.1867 3.5724 2.1830 21 14 14.0909 6.1049 3.3034 22 1 13.3541 6.3234 4.5740 23 1 15.5311 5.8932 3.5970 24 1 13.9331 7.2944 2.4287 25 6 9.5128 4.6570 1.3066 26 6 8.2072 4.7268 0.8620 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 5.0828 0.4506 1.3062 33 1 3.5532 -0.4555 1.3961 34 1 3.6809 1.1524 2.1485 35 1 3.7604 3.0734 -1.0117 36 1 3.9150 3.1643 0.7592 37 1 5.8651 1.8583 -1.0239 38 1 5.1997 4.2701 -2.1844 39 1 6.6996 5.1926 -1.9256 40 1 6.7791 3.4897 -2.4384 41 1 8.0237 1.7778 -0.7694 42 1 10.3549 1.6485 0.0084 43 1 15.1199 3.5970 2.4464 44 1 9.9284 5.4640 1.8918 45 1 7.6018 5.5891 1.0994 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045657472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:38 Heat of formation + Delta-G solvation = -80.090035 kcal Electronic energy + Delta-G solvation = -22839.223820 eV Core-core repulsion = 19435.283416 eV Total energy + Delta-G solvation = -3403.940404 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81873 -39.48323 -38.81035 -37.30262 -35.02834 -34.16153 -31.80115 -31.06110 -29.19871 -28.13383 -27.33228 -26.97709 -25.24849 -23.92924 -23.25153 -21.62391 -21.03258 -19.72004 -18.78447 -17.51023 -16.95708 -16.69552 -16.54786 -16.25440 -16.02211 -15.80020 -15.47410 -15.34598 -15.12186 -14.72260 -14.35141 -14.01205 -13.96087 -13.89998 -13.49619 -13.42371 -13.23899 -12.96443 -12.79848 -12.56322 -12.43156 -12.34636 -12.18514 -12.07908 -11.87730 -11.84447 -11.55534 -11.51465 -11.12595 -10.75256 -10.57236 -9.70920 -9.22158 -8.81371 -8.44542 -6.12504 0.66695 0.77794 1.35159 1.46393 1.51717 2.19561 2.72980 2.87646 3.19759 3.49318 3.57632 3.92148 4.04071 4.06465 4.15820 4.20149 4.25478 4.41639 4.42913 4.49980 4.52145 4.56202 4.61766 4.65758 4.75992 4.76212 4.85956 4.87985 4.91772 4.92668 5.07571 5.15705 5.18754 5.20909 5.31163 5.35082 5.38422 5.53195 5.64872 5.76561 5.83880 6.06234 6.21407 6.28732 6.33326 6.56984 7.00084 7.83026 8.78752 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.033132 B = 0.002445 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.905992 B =11448.737371 C =11667.627849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.067 3.933 4 C -0.083 4.083 5 H 0.073 0.927 6 C -0.131 4.131 7 C 0.072 3.928 8 N -0.688 5.688 9 C 0.147 3.853 10 H 0.088 0.912 11 C -0.171 4.171 12 C -0.140 4.140 13 C -0.046 4.046 14 C -0.208 4.208 15 C 0.108 3.892 16 O -0.236 6.236 17 C -0.412 4.412 18 H 0.100 0.900 19 C -0.026 4.026 20 N -0.922 5.922 21 Si 1.019 2.981 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.243 4.243 26 C -0.069 4.069 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.345 0.655 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.141 0.859 42 H 0.108 0.892 43 H 0.272 0.728 44 H 0.116 0.884 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.595 -0.070 -6.466 27.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.010 4.010 4 C -0.102 4.102 5 H 0.091 0.909 6 C -0.188 4.188 7 C -0.057 4.057 8 N -0.319 5.319 9 C 0.037 3.963 10 H 0.106 0.894 11 C -0.230 4.230 12 C -0.141 4.141 13 C -0.064 4.064 14 C -0.227 4.227 15 C 0.058 3.942 16 O -0.143 6.143 17 C -0.489 4.489 18 H 0.118 0.882 19 C -0.223 4.223 20 N -0.561 5.561 21 Si 0.838 3.162 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.181 1.181 25 C -0.262 4.262 26 C -0.087 4.087 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.164 0.836 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.159 0.841 42 H 0.126 0.874 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -26.033 -0.526 -5.772 26.670 hybrid contribution 0.538 0.767 -0.339 0.996 sum -25.494 0.240 -6.110 26.217 Atomic orbital electron populations 1.22894 0.79756 1.03608 1.00760 1.87844 1.21180 1.28878 1.95572 1.22574 0.93193 0.84338 1.00903 1.21030 0.92905 0.96799 0.99423 0.90870 1.21599 1.01249 0.99731 0.96252 1.21871 0.87014 0.95651 1.01136 1.60421 1.08472 1.12707 1.50281 1.20137 0.89885 0.90756 0.95532 0.89430 1.22427 1.02259 1.02249 0.96029 1.19663 0.96582 0.95039 1.02790 1.20661 0.90712 0.97649 0.97374 1.20467 0.97822 0.99225 1.05172 1.19937 0.85321 0.95400 0.93510 1.83943 1.23440 1.39655 1.67264 1.21766 0.95177 0.95198 1.36725 0.88227 1.26603 0.94972 1.02341 0.98369 1.70186 1.06783 1.32318 1.46813 0.84646 0.77425 0.75656 0.78465 1.18203 1.19649 1.18143 1.21207 0.96569 0.99875 1.08534 1.20923 0.93314 0.98711 0.95785 0.93120 0.88903 0.93389 0.92680 0.92182 0.92659 0.93499 0.93394 0.93632 0.90919 0.83582 0.91031 0.92292 0.92506 0.84128 0.87408 0.91928 0.86591 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.38 10.24 -148.98 -1.53 -8.90 16 3 C 0.07 0.96 5.32 71.98 0.38 1.34 16 4 C -0.08 -1.34 2.77 -10.79 -0.03 -1.37 16 5 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 6 C -0.13 -2.60 8.98 71.98 0.65 -1.95 16 7 C 0.07 1.10 4.87 86.30 0.42 1.52 16 8 N -0.69 -13.32 5.15 -495.47 -2.55 -15.87 16 9 C 0.15 3.13 2.79 44.17 0.12 3.25 16 10 H 0.09 1.74 7.66 -2.39 -0.02 1.73 16 11 C -0.17 -3.07 9.14 71.98 0.66 -2.41 16 12 C -0.14 -4.28 4.96 -19.84 -0.10 -4.38 16 13 C -0.05 -1.56 9.32 22.25 0.21 -1.35 16 14 C -0.21 -9.14 9.99 22.39 0.22 -8.92 16 15 C 0.11 5.55 6.65 22.57 0.15 5.70 16 16 O -0.24 -14.63 9.76 -22.88 -0.22 -14.85 16 17 C -0.41 -24.60 9.49 67.92 0.64 -23.96 16 18 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 19 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 20 N -0.92 -57.81 13.67 21.61 0.30 -57.51 16 21 Si 1.02 43.65 29.55 68.60 2.03 45.68 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 24 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 25 C -0.24 -10.80 9.17 22.39 0.21 -10.59 16 26 C -0.07 -2.38 9.66 22.25 0.21 -2.17 16 27 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16 33 H 0.05 0.97 7.82 -2.39 -0.02 0.95 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.56 7.44 -2.39 -0.02 0.54 16 36 H 0.07 1.15 8.05 -2.39 -0.02 1.13 16 37 H 0.34 6.14 7.81 -89.69 -0.70 5.44 16 38 H 0.07 0.99 7.45 -2.39 -0.02 0.97 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 41 H 0.14 3.87 7.23 -2.91 -0.02 3.84 16 42 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 43 H 0.27 15.62 8.31 -92.71 -0.77 14.84 16 44 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 45 H 0.14 3.81 8.03 -2.91 -0.02 3.79 16 Total: -1.00 -72.51 369.02 3.75 -68.76 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.26 Total: 27.48 kcal Atomic # 6 Polarization: -50.24 SS G_CDS: 5.46 Total: -44.78 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -2.25 Total: -73.38 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -1.75 Total: -23.76 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -72.51 3.75 -68.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045657472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.332 kcal (2) G-P(sol) polarization free energy of solvation -72.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds