Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47063 * 2 1 4 4 C 1.35988 * 117.00171 * 179.97438 * 3 2 1 5 5 C 1.38562 * 120.07446 * 0.02929 * 4 3 2 6 6 C 1.38247 * 120.00483 * 179.97438 * 5 4 3 7 7 C 1.38252 * 120.14211 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.92538 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47468 * 89.99407 * 8 7 6 10 10 C 1.46902 * 111.00082 * 293.95661 * 9 8 7 11 11 C 1.46900 * 111.00012 * 170.00071 * 9 8 7 12 12 C 1.53006 * 109.46835 * 190.00131 * 11 9 8 13 13 C 1.50708 * 109.46849 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99801 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99754 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99749 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00031 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47099 * 90.00090 * 17 15 13 19 19 H 1.48506 * 109.46815 * 209.99810 * 17 15 13 20 20 H 1.48501 * 109.47265 * 329.99788 * 17 15 13 21 21 C 1.38245 * 120.14696 * 359.76128 * 7 6 5 22 22 C 1.38565 * 119.99806 * 0.51620 * 21 7 6 23 23 O 1.35991 * 120.07010 * 179.74110 * 22 21 7 24 24 C 1.42903 * 117.00364 * 359.72700 * 23 22 21 25 25 H 1.09003 * 109.46883 * 299.99628 * 1 2 3 26 26 H 1.08999 * 109.47430 * 59.99504 * 1 2 3 27 27 H 1.08995 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47316 * 240.00533 * 2 1 3 29 29 H 1.08999 * 109.47430 * 120.00496 * 2 1 3 30 30 H 1.08008 * 119.99838 * 359.97438 * 5 4 3 31 31 H 1.07996 * 119.92892 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.46743 * 209.99765 * 8 7 6 33 33 H 1.09004 * 109.47025 * 329.99654 * 8 7 6 34 34 H 1.08994 * 109.47510 * 59.99781 * 10 9 8 35 35 H 1.08995 * 109.47242 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.46684 * 299.99784 * 10 9 8 37 37 H 1.09000 * 109.46961 * 310.00009 * 11 9 8 38 38 H 1.08994 * 109.47338 * 70.00181 * 11 9 8 39 39 H 1.09000 * 109.47246 * 299.99703 * 12 11 9 40 40 H 1.08994 * 109.47117 * 59.99915 * 12 11 9 41 41 H 0.96993 * 120.00314 * 180.02562 * 16 15 13 42 42 H 1.08004 * 119.99970 * 180.28300 * 21 7 6 43 43 H 1.09002 * 109.47382 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.46938 * 59.99845 * 24 23 22 45 45 H 1.09004 * 109.46926 * 299.99967 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.2000 0.4278 0.0004 6 6 5.5703 0.6106 0.0005 7 6 6.1003 1.8875 0.0000 8 6 7.5948 2.0812 -0.0005 9 7 8.0800 2.1438 -1.3856 10 6 7.8943 0.8557 -2.0672 11 6 9.4862 2.5661 -1.4323 12 6 9.8826 2.8601 -2.8806 13 6 11.3254 3.2928 -2.9285 14 1 11.9018 3.3525 -2.0171 15 6 11.9095 3.6124 -4.1359 16 7 13.1684 3.9904 -4.1776 17 14 10.9127 3.5084 -5.7122 18 1 10.2535 4.8142 -5.9681 19 1 11.8128 3.1776 -6.8461 20 1 9.8794 2.4506 -5.5756 21 6 5.2623 2.9871 -0.0054 22 6 3.8880 2.8107 0.0004 23 8 3.0623 3.8913 0.0004 24 6 3.6801 5.1799 0.0003 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.7885 -0.5708 0.0004 31 1 6.2282 -0.2458 0.0008 32 1 7.8409 3.0107 0.5130 33 1 8.0697 1.2454 0.5134 34 1 6.8347 0.6005 -2.0793 35 1 8.2614 0.9300 -3.0908 36 1 8.4486 0.0811 -1.5373 37 1 9.6155 3.4656 -0.8304 38 1 10.1178 1.7706 -1.0371 39 1 9.7532 1.9606 -3.4824 40 1 9.2510 3.6556 -3.2758 41 1 13.5793 4.2156 -5.0269 42 1 5.6789 3.9835 -0.0103 43 1 2.9105 5.9519 -0.0001 44 1 4.3005 5.2853 -0.8897 45 1 4.3006 5.2854 0.8903 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052892036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = -49.490230 kcal Electronic energy + Delta-G solvation = -23336.183976 eV Core-core repulsion = 19933.570479 eV Total energy + Delta-G solvation = -3402.613497 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.67246 -38.64454 -38.06871 -36.27744 -33.10208 -32.20777 -31.01589 -30.31287 -29.39589 -27.53154 -26.78159 -25.23543 -24.06859 -22.56481 -21.77699 -20.85018 -19.86075 -18.58465 -17.18227 -16.87039 -16.62667 -16.41221 -15.58836 -15.09453 -14.86258 -14.78665 -14.66957 -14.32034 -13.93392 -13.43971 -13.35330 -13.28278 -12.87889 -12.73721 -12.52534 -12.22048 -12.11556 -12.00191 -11.56617 -11.38503 -11.25676 -11.13436 -11.05855 -11.04260 -10.95855 -10.76979 -10.12159 -9.75517 -9.72741 -9.19484 -8.73180 -8.52257 -7.95108 -7.72083 -6.04039 -4.02068 1.24697 1.37187 3.03551 3.20903 3.33323 3.40200 3.45343 3.61664 4.46813 4.53864 4.61532 4.64554 4.73720 4.84612 4.93214 4.95778 5.05909 5.12904 5.20822 5.25628 5.30555 5.39340 5.43752 5.49704 5.50696 5.62734 5.67920 5.73929 5.82906 5.86556 6.09783 6.14830 6.20875 6.31774 6.36695 6.58408 6.64325 6.76907 6.97406 7.15192 7.31511 7.50938 7.58496 7.62139 7.85527 8.53335 8.99992 9.58626 11.09318 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.003016 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.963586 B = 9280.892908 C = 9516.238112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.308 6.308 4 C 0.094 3.906 5 C -0.174 4.174 6 C -0.111 4.111 7 C -0.064 4.064 8 C 0.093 3.907 9 N -0.540 5.540 10 C 0.021 3.979 11 C 0.070 3.930 12 C -0.007 4.007 13 C -0.521 4.521 14 H 0.070 0.930 15 C 0.067 3.933 16 N -0.904 5.904 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.265 1.265 21 C -0.149 4.149 22 C 0.097 3.903 23 O -0.310 6.310 24 C 0.026 3.974 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.020 0.980 37 H 0.066 0.934 38 H 0.027 0.973 39 H 0.016 0.984 40 H 0.020 0.980 41 H 0.263 0.737 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.058 0.942 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.735 -6.876 10.694 26.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.222 6.222 4 C 0.049 3.951 5 C -0.193 4.193 6 C -0.130 4.130 7 C -0.065 4.065 8 C -0.035 4.035 9 N -0.264 5.264 10 C -0.127 4.127 11 C -0.056 4.056 12 C -0.045 4.045 13 C -0.559 4.559 14 H 0.089 0.911 15 C -0.134 4.134 16 N -0.543 5.543 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.169 4.169 22 C 0.051 3.949 23 O -0.223 6.223 24 C -0.070 4.070 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.142 0.858 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.038 0.962 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.155 0.845 43 H 0.116 0.884 44 H 0.077 0.923 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.219 -6.312 10.324 27.074 hybrid contribution 0.495 -0.711 -0.519 1.010 sum -23.725 -7.023 9.805 26.614 Atomic orbital electron populations 1.21754 0.92873 1.02624 1.03546 1.22749 0.95825 0.82420 1.01174 1.86150 1.18333 1.28508 1.89226 1.18154 0.82874 0.91175 1.02898 1.20973 0.93900 0.97199 1.07199 1.20772 0.94056 0.96857 1.01295 1.19553 0.95542 0.92235 0.99127 1.21021 0.90042 1.01392 0.91006 1.62114 1.21855 1.29140 1.13301 1.22459 1.00726 0.89435 1.00062 1.22162 0.84077 0.98735 1.00651 1.19577 0.96715 0.96655 0.91550 1.21086 0.94566 1.45186 0.95096 0.91138 1.24996 0.94780 0.94536 0.99091 1.69911 1.11965 1.46251 1.26195 0.86748 0.80250 0.79090 0.83016 1.20242 1.21515 1.18982 1.20967 0.90519 1.00310 1.05055 1.18224 0.88970 0.85277 1.02412 1.86135 1.33944 1.13081 1.89189 1.23074 0.99740 0.82508 1.01635 0.91584 0.91514 0.90528 0.92189 0.92268 0.85096 0.85835 0.90123 0.94206 0.91988 0.90775 0.96151 0.91502 0.95467 0.96556 0.96181 0.92741 0.84510 0.88409 0.92318 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.05 0.45 5.46 37.16 0.20 0.66 16 3 O -0.31 -3.88 9.92 -34.20 -0.34 -4.22 16 4 C 0.09 1.25 6.70 -39.12 -0.26 0.98 16 5 C -0.17 -1.99 9.04 -39.46 -0.36 -2.35 16 6 C -0.11 -1.34 7.95 -39.57 -0.31 -1.65 16 7 C -0.06 -0.85 4.88 -104.61 -0.51 -1.36 16 8 C 0.09 1.32 5.11 -4.98 -0.03 1.30 16 9 N -0.54 -9.35 4.75 -244.37 -1.16 -10.51 16 10 C 0.02 0.34 8.94 60.07 0.54 0.88 16 11 C 0.07 1.42 4.90 -3.82 -0.02 1.40 16 12 C -0.01 -0.18 3.97 -27.88 -0.11 -0.29 16 13 C -0.52 -14.91 9.66 -34.44 -0.33 -15.24 16 14 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 17 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 21 C -0.15 -1.98 8.69 -39.46 -0.34 -2.33 16 22 C 0.10 1.33 6.70 -39.12 -0.26 1.07 16 23 O -0.31 -4.15 10.28 -34.21 -0.35 -4.50 16 24 C 0.03 0.24 9.81 101.05 0.99 1.24 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 30 H 0.13 1.16 6.30 -52.48 -0.33 0.83 16 31 H 0.12 1.31 8.03 -52.49 -0.42 0.89 16 32 H 0.08 1.09 7.88 -51.93 -0.41 0.69 16 33 H 0.04 0.54 8.06 -51.93 -0.42 0.12 16 34 H 0.06 0.90 6.16 -51.93 -0.32 0.58 16 35 H 0.07 1.31 6.30 -51.93 -0.33 0.98 16 36 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 38 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 39 H 0.02 0.40 5.53 -51.93 -0.29 0.11 16 40 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.14 1.67 6.30 -52.48 -0.33 1.34 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 45 H 0.05 0.46 7.68 -51.93 -0.40 0.06 16 LS Contribution 360.55 15.07 5.43 5.43 Total: -1.00 -32.93 360.55 -8.20 -41.13 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -7.36 Total: -3.05 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -0.52 Total: -14.43 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.39 Total: -37.75 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.69 Total: -8.72 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.93 -8.20 -41.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052892036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.361 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds