Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47063 * 2 1 4 4 C 1.35988 * 117.00171 * 179.97438 * 3 2 1 5 5 C 1.38562 * 120.07446 * 0.02929 * 4 3 2 6 6 C 1.38247 * 120.00483 * 179.97438 * 5 4 3 7 7 C 1.38252 * 120.14211 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.92538 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47468 * 89.99407 * 8 7 6 10 10 C 1.46902 * 111.00082 * 293.95661 * 9 8 7 11 11 C 1.46900 * 111.00012 * 170.00071 * 9 8 7 12 12 C 1.53006 * 109.46835 * 190.00131 * 11 9 8 13 13 C 1.50708 * 109.46849 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99801 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99754 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99749 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00031 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47099 * 90.00090 * 17 15 13 19 19 H 1.48506 * 109.46815 * 209.99810 * 17 15 13 20 20 H 1.48501 * 109.47265 * 329.99788 * 17 15 13 21 21 C 1.38245 * 120.14696 * 359.76128 * 7 6 5 22 22 C 1.38565 * 119.99806 * 0.51620 * 21 7 6 23 23 O 1.35991 * 120.07010 * 179.74110 * 22 21 7 24 24 C 1.42903 * 117.00364 * 359.72700 * 23 22 21 25 25 H 1.09003 * 109.46883 * 299.99628 * 1 2 3 26 26 H 1.08999 * 109.47430 * 59.99504 * 1 2 3 27 27 H 1.08995 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47316 * 240.00533 * 2 1 3 29 29 H 1.08999 * 109.47430 * 120.00496 * 2 1 3 30 30 H 1.08008 * 119.99838 * 359.97438 * 5 4 3 31 31 H 1.07996 * 119.92892 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.46743 * 209.99765 * 8 7 6 33 33 H 1.09004 * 109.47025 * 329.99654 * 8 7 6 34 34 H 1.08994 * 109.47510 * 59.99781 * 10 9 8 35 35 H 1.08995 * 109.47242 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.46684 * 299.99784 * 10 9 8 37 37 H 1.09000 * 109.46961 * 310.00009 * 11 9 8 38 38 H 1.08994 * 109.47338 * 70.00181 * 11 9 8 39 39 H 1.09000 * 109.47246 * 299.99703 * 12 11 9 40 40 H 1.08994 * 109.47117 * 59.99915 * 12 11 9 41 41 H 0.96993 * 120.00314 * 180.02562 * 16 15 13 42 42 H 1.08004 * 119.99970 * 180.28300 * 21 7 6 43 43 H 1.09002 * 109.47382 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.46938 * 59.99845 * 24 23 22 45 45 H 1.09004 * 109.46926 * 299.99967 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.2000 0.4278 0.0004 6 6 5.5703 0.6106 0.0005 7 6 6.1003 1.8875 0.0000 8 6 7.5948 2.0812 -0.0005 9 7 8.0800 2.1438 -1.3856 10 6 7.8943 0.8557 -2.0672 11 6 9.4862 2.5661 -1.4323 12 6 9.8826 2.8601 -2.8806 13 6 11.3254 3.2928 -2.9285 14 1 11.9018 3.3525 -2.0171 15 6 11.9095 3.6124 -4.1359 16 7 13.1684 3.9904 -4.1776 17 14 10.9127 3.5084 -5.7122 18 1 10.2535 4.8142 -5.9681 19 1 11.8128 3.1776 -6.8461 20 1 9.8794 2.4506 -5.5756 21 6 5.2623 2.9871 -0.0054 22 6 3.8880 2.8107 0.0004 23 8 3.0623 3.8913 0.0004 24 6 3.6801 5.1799 0.0003 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.7885 -0.5708 0.0004 31 1 6.2282 -0.2458 0.0008 32 1 7.8409 3.0107 0.5130 33 1 8.0697 1.2454 0.5134 34 1 6.8347 0.6005 -2.0793 35 1 8.2614 0.9300 -3.0908 36 1 8.4486 0.0811 -1.5373 37 1 9.6155 3.4656 -0.8304 38 1 10.1178 1.7706 -1.0371 39 1 9.7532 1.9606 -3.4824 40 1 9.2510 3.6556 -3.2758 41 1 13.5793 4.2156 -5.0269 42 1 5.6789 3.9835 -0.0103 43 1 2.9105 5.9519 -0.0001 44 1 4.3005 5.2853 -0.8897 45 1 4.3006 5.2854 0.8903 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052892036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = -70.341693 kcal Electronic energy + Delta-G solvation = -23337.088163 eV Core-core repulsion = 19933.570479 eV Total energy + Delta-G solvation = -3403.517684 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.57980 -39.51714 -39.21460 -37.45184 -35.10663 -33.16945 -32.29254 -31.41606 -30.61168 -28.44232 -28.02957 -26.75527 -24.86609 -23.99672 -22.65744 -21.93639 -21.50387 -19.45871 -19.01425 -18.07844 -17.55824 -17.20875 -16.58632 -16.38422 -16.31523 -16.03409 -15.73319 -15.52679 -15.18035 -14.75269 -14.64392 -14.29282 -14.14300 -14.01274 -13.37702 -13.33687 -13.05301 -12.96303 -12.87275 -12.83857 -12.54204 -12.42824 -12.21213 -11.97857 -11.90491 -11.88486 -11.68132 -11.60912 -11.45690 -11.32604 -10.75578 -9.66807 -9.23860 -8.72650 -8.29752 -6.33406 0.30961 0.41281 1.36841 1.37278 1.50179 2.27202 2.36262 2.37592 2.62569 3.05960 3.27317 3.73484 3.84018 4.05333 4.08825 4.13594 4.26108 4.27578 4.33225 4.39136 4.39955 4.40873 4.45315 4.54742 4.58768 4.69346 4.73580 4.78544 4.81821 4.89846 4.96225 4.96249 5.08021 5.14485 5.23078 5.29785 5.31212 5.48372 5.61065 5.64834 5.71970 6.12703 6.14700 6.21971 6.31788 6.64078 6.74373 7.31282 8.86843 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.003016 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.963586 B = 9280.892908 C = 9516.238112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.329 6.329 4 C 0.083 3.917 5 C -0.169 4.169 6 C -0.110 4.110 7 C -0.077 4.077 8 C 0.097 3.903 9 N -0.548 5.548 10 C 0.023 3.977 11 C 0.083 3.917 12 C -0.001 4.001 13 C -0.531 4.531 14 H 0.034 0.966 15 C 0.007 3.993 16 N -0.950 5.950 17 Si 0.950 3.050 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.249 1.249 21 C -0.155 4.155 22 C 0.077 3.923 23 O -0.329 6.329 24 C 0.020 3.980 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.141 0.859 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.031 0.969 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.019 0.981 40 H 0.017 0.983 41 H 0.267 0.733 42 H 0.140 0.860 43 H 0.119 0.881 44 H 0.055 0.945 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.926 -8.320 10.473 29.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.244 6.244 4 C 0.037 3.963 5 C -0.187 4.187 6 C -0.128 4.128 7 C -0.077 4.077 8 C -0.030 4.030 9 N -0.273 5.273 10 C -0.125 4.125 11 C -0.045 4.045 12 C -0.038 4.038 13 C -0.569 4.569 14 H 0.053 0.947 15 C -0.190 4.190 16 N -0.591 5.591 17 Si 0.774 3.226 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.173 1.173 21 C -0.174 4.174 22 C 0.032 3.968 23 O -0.244 6.244 24 C -0.074 4.074 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.176 0.824 31 H 0.159 0.841 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.158 0.842 43 H 0.137 0.863 44 H 0.074 0.926 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -26.431 -7.765 10.123 29.349 hybrid contribution 1.143 -0.268 -0.353 1.226 sum -25.288 -8.033 9.770 28.275 Atomic orbital electron populations 1.21790 0.91695 1.04097 1.02958 1.23074 0.96843 0.80911 1.02282 1.86135 1.18091 1.31030 1.89151 1.18445 0.83541 0.91524 1.02751 1.21246 0.93492 0.98019 1.05951 1.20988 0.94616 0.96814 1.00416 1.19517 0.94766 0.92955 1.00504 1.21018 0.90757 1.02078 0.89178 1.62019 1.19457 1.30214 1.15570 1.22458 1.01930 0.89119 0.98991 1.21844 0.86086 0.98695 0.97853 1.19451 0.93703 0.96318 0.94368 1.21417 0.96649 1.44934 0.93907 0.94739 1.25948 0.95859 0.94162 1.03048 1.70055 1.13934 1.47689 1.27386 0.85654 0.78923 0.79800 0.78224 1.19359 1.20902 1.17292 1.21043 0.90560 1.00652 1.05175 1.18479 0.89257 0.85907 1.03170 1.86103 1.34865 1.14104 1.89314 1.23284 1.00626 0.81606 1.01915 0.92029 0.92250 0.87992 0.91206 0.90865 0.82398 0.84114 0.89902 0.93058 0.90237 0.92525 0.95023 0.91762 0.95928 0.96233 0.96444 0.92464 0.84203 0.86300 0.92596 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.04 0.64 5.46 71.98 0.39 1.03 16 3 O -0.33 -7.90 9.92 -79.55 -0.79 -8.69 16 4 C 0.08 2.07 6.70 22.57 0.15 2.22 16 5 C -0.17 -3.43 9.04 22.35 0.20 -3.23 16 6 C -0.11 -2.35 7.95 22.28 0.18 -2.17 16 7 C -0.08 -1.91 4.88 -19.86 -0.10 -2.01 16 8 C 0.10 2.58 5.11 85.56 0.44 3.02 16 9 N -0.55 -18.10 4.75 -927.06 -4.41 -22.51 16 10 C 0.02 0.69 8.94 127.69 1.14 1.83 16 11 C 0.08 3.28 4.90 86.31 0.42 3.71 16 12 C 0.00 -0.03 3.97 29.85 0.12 0.09 16 13 C -0.53 -30.87 9.66 25.60 0.25 -30.63 16 14 H 0.03 2.19 7.99 -2.91 -0.02 2.16 16 15 C 0.01 0.40 5.47 84.65 0.46 0.86 16 16 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 17 Si 0.95 45.18 27.47 68.60 1.88 47.07 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 21 C -0.16 -3.97 8.69 22.35 0.19 -3.77 16 22 C 0.08 2.07 6.70 22.57 0.15 2.22 16 23 O -0.33 -8.70 10.28 -79.59 -0.82 -9.52 16 24 C 0.02 0.37 9.81 113.37 1.11 1.48 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 29 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 30 H 0.16 2.24 6.30 -2.91 -0.02 2.22 16 31 H 0.14 2.49 8.03 -2.91 -0.02 2.47 16 32 H 0.08 2.15 7.88 -2.39 -0.02 2.13 16 33 H 0.05 1.26 8.06 -2.39 -0.02 1.24 16 34 H 0.08 2.09 6.16 -2.39 -0.01 2.08 16 35 H 0.06 1.88 6.30 -2.39 -0.02 1.87 16 36 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.06 2.55 7.93 -2.39 -0.02 2.53 16 38 H 0.02 0.91 8.12 -2.39 -0.02 0.89 16 39 H 0.02 0.92 5.53 -2.39 -0.01 0.91 16 40 H 0.02 0.83 7.57 -2.39 -0.02 0.82 16 41 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 42 H 0.14 3.33 6.30 -2.91 -0.02 3.31 16 43 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.04 7.65 -2.39 -0.02 1.02 16 45 H 0.06 1.03 7.68 -2.38 -0.02 1.01 16 Total: -1.00 -71.29 360.55 2.93 -68.36 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.90 Total: 11.23 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 5.85 Total: -26.28 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -4.11 Total: -82.17 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -1.61 Total: -18.21 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.07 kcal Total: -71.29 2.93 -68.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052892036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.983 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds