Wall clock time and date at job start Tue Mar 31 2020 06:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46898 * 109.46995 * 2 1 4 4 C 1.46899 * 110.99752 * 199.52684 * 3 2 1 5 5 C 1.53004 * 109.47120 * 66.05052 * 4 3 2 6 6 C 1.50699 * 109.47258 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99940 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99970 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00173 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99997 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47066 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46986 * 119.99891 * 10 8 6 13 13 H 1.48496 * 109.47396 * 239.99898 * 10 8 6 14 14 C 1.46903 * 110.99702 * 75.57942 * 3 2 1 15 15 C 1.50710 * 109.46803 * 199.78835 * 14 3 2 16 16 C 1.38252 * 119.92146 * 264.41725 * 15 14 3 17 17 C 1.38244 * 120.13846 * 179.76966 * 16 15 14 18 18 C 1.38559 * 120.00298 * 0.45879 * 17 16 15 19 19 O 1.35995 * 120.07383 * 179.79046 * 18 17 16 20 20 C 1.42898 * 117.00387 * 359.72812 * 19 18 17 21 21 C 1.39150 * 119.85424 * 359.51961 * 18 17 16 22 22 O 1.35995 * 120.07666 * 180.22916 * 21 18 17 23 23 C 1.42903 * 117.00038 * 179.97438 * 22 21 18 24 24 C 1.38235 * 119.92464 * 84.39117 * 15 14 3 25 25 H 1.09010 * 109.47105 * 294.84765 * 1 2 3 26 26 H 1.08998 * 109.47270 * 54.84928 * 1 2 3 27 27 H 1.09002 * 109.47124 * 174.85674 * 1 2 3 28 28 H 1.09003 * 109.47177 * 240.00412 * 2 1 3 29 29 H 1.08998 * 109.47397 * 120.00461 * 2 1 3 30 30 H 1.09010 * 109.47246 * 186.04740 * 4 3 2 31 31 H 1.08998 * 109.47541 * 306.04652 * 4 3 2 32 32 H 1.08994 * 109.46792 * 299.99631 * 5 4 3 33 33 H 1.09004 * 109.46708 * 59.99880 * 5 4 3 34 34 H 0.96996 * 120.00567 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.47332 * 79.79034 * 14 3 2 36 36 H 1.08998 * 109.47319 * 319.78432 * 14 3 2 37 37 H 1.07998 * 119.93260 * 0.02562 * 16 15 14 38 38 H 1.08010 * 119.99772 * 180.22900 * 17 16 15 39 39 H 1.09001 * 109.47282 * 59.99280 * 20 19 18 40 40 H 1.08997 * 109.47534 * 180.02562 * 20 19 18 41 41 H 1.09007 * 109.46853 * 299.99867 * 20 19 18 42 42 H 1.08994 * 109.46981 * 299.99917 * 23 22 21 43 43 H 1.09006 * 109.46856 * 60.00498 * 23 22 21 44 44 H 1.09005 * 109.46807 * 180.02562 * 23 22 21 45 45 H 1.08004 * 120.00409 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4137 1.4504 -0.4584 5 6 3.4865 1.0387 -1.9302 6 6 4.9165 1.1064 -2.4007 7 1 5.6956 1.4129 -1.7183 8 6 5.2303 0.7781 -3.7025 9 7 4.2815 0.4064 -4.5338 10 14 7.0028 0.8628 -4.2859 11 1 7.8718 1.3062 -3.1663 12 1 7.4369 -0.4806 -4.7467 13 1 7.1090 1.8293 -5.4082 14 6 1.8730 1.9951 1.3283 15 6 1.9122 3.4961 1.1986 16 6 3.1009 4.1744 1.3940 17 6 3.1430 5.5507 1.2715 18 6 1.9903 6.2543 0.9617 19 8 2.0291 7.6087 0.8451 20 6 3.2915 8.2426 1.0611 21 6 0.7939 5.5715 0.7646 22 8 -0.3392 6.2572 0.4558 23 6 -1.5303 5.4905 0.2670 24 6 0.7596 4.1914 0.8842 25 1 -0.3634 0.4319 0.9326 26 1 -0.3634 0.5916 -0.8402 27 1 -0.3633 -1.0235 -0.0921 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.7853 2.4692 -0.3473 31 1 4.0248 0.7737 0.1389 32 1 3.1150 0.0200 -2.0412 33 1 2.8754 1.7155 -2.5274 34 1 4.5022 0.1750 -5.4496 35 1 2.6883 1.6646 1.9719 36 1 0.9207 1.6928 1.7639 37 1 3.9995 3.6275 1.6388 38 1 4.0737 6.0780 1.4210 39 1 4.0157 7.8655 0.3390 40 1 3.1827 9.3202 0.9384 41 1 3.6389 8.0255 2.0712 42 1 -1.3826 4.7853 -0.5509 43 1 -1.7591 4.9435 1.1817 44 1 -2.3576 6.1580 0.0258 45 1 -0.1678 3.6591 0.7320 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053097466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:42 Heat of formation + Delta-G solvation = -50.220512 kcal Electronic energy + Delta-G solvation = -23920.408935 eV Core-core repulsion = 20517.763771 eV Total energy + Delta-G solvation = -3402.645164 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46428 -38.36556 -38.03507 -36.25895 -33.13955 -31.38691 -30.72016 -30.17192 -28.73863 -27.26148 -27.20208 -25.24439 -23.68807 -22.13864 -21.81339 -21.00754 -19.60086 -18.31569 -17.03437 -16.61766 -16.34177 -15.99740 -15.19572 -15.05525 -14.82903 -14.66179 -14.50928 -14.37740 -14.16080 -13.36812 -13.26089 -13.09799 -12.52870 -12.38832 -12.09778 -12.01725 -11.82243 -11.53191 -11.42637 -11.18385 -11.13958 -10.98395 -10.93584 -10.83073 -10.69325 -10.52813 -10.37022 -9.77538 -9.34195 -9.07222 -8.52661 -8.30627 -7.76373 -7.57269 -5.97629 -3.99573 1.45017 1.57976 3.31867 3.33111 3.35592 3.39298 3.42954 3.80983 4.44425 4.65709 4.84227 4.94690 5.05409 5.14174 5.16078 5.20452 5.22636 5.35363 5.38351 5.43369 5.47205 5.52587 5.55317 5.63991 5.67528 5.75258 5.87082 5.89821 6.14356 6.26581 6.28527 6.39652 6.41867 6.54633 6.61848 6.77998 6.82303 7.02360 7.11858 7.53665 7.60606 7.67745 7.82705 7.93923 8.11956 8.46266 9.07824 9.63844 11.13841 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.004469 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.161940 B = 6263.842676 C = 7567.660571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.533 5.533 4 C 0.061 3.939 5 C 0.029 3.971 6 C -0.519 4.519 7 H 0.053 0.947 8 C 0.059 3.941 9 N -0.893 5.893 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.093 3.907 15 C -0.060 4.060 16 C -0.106 4.106 17 C -0.170 4.170 18 C 0.091 3.909 19 O -0.310 6.310 20 C 0.027 3.973 21 C 0.095 3.905 22 O -0.310 6.310 23 C 0.027 3.973 24 C -0.148 4.148 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.024 0.976 34 H 0.259 0.741 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.096 0.904 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.237 9.143 14.213 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 N -0.257 5.257 4 C -0.066 4.066 5 C -0.009 4.009 6 C -0.558 4.558 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.532 5.532 10 Si 0.718 3.282 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.035 4.035 15 C -0.061 4.061 16 C -0.125 4.125 17 C -0.189 4.189 18 C 0.046 3.954 19 O -0.224 6.224 20 C -0.068 4.068 21 C 0.050 3.950 22 O -0.224 6.224 23 C -0.068 4.068 24 C -0.167 4.167 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.107 0.893 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.114 0.886 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.735 9.681 13.633 18.865 hybrid contribution 1.709 -0.719 0.089 1.856 sum -7.027 8.962 13.722 17.832 Atomic orbital electron populations 1.21770 0.95844 1.00913 1.01556 1.22144 0.95246 0.89443 1.01381 1.62122 1.23375 1.17329 1.22871 1.22390 0.84702 1.00093 0.99413 1.19103 0.96584 0.96655 0.88509 1.21223 0.93389 1.45175 0.96033 0.92834 1.24979 0.97059 0.95380 0.96839 1.69977 1.31946 1.45968 1.05348 0.86573 0.85274 0.77612 0.78755 1.19796 1.21057 1.21000 1.21012 1.00921 0.90154 0.91426 1.19485 0.92469 0.95371 0.98808 1.20788 0.97637 0.93192 1.00868 1.20980 0.96649 0.95192 1.06099 1.18187 0.92005 0.82769 1.02430 1.86134 1.33047 1.16709 1.86528 1.23022 0.84977 0.98068 1.00730 1.18186 0.85243 0.89999 1.01621 1.86130 1.15655 1.35265 1.85364 1.23035 0.85490 0.97291 1.01000 1.20851 1.00018 0.91162 1.04677 0.93706 0.91850 0.92908 0.89335 0.95681 0.91733 0.96402 0.96507 0.95802 0.93096 0.94299 0.90699 0.85760 0.85014 0.92616 0.88543 0.92971 0.92382 0.92968 0.88565 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.95 37.15 0.37 -1.57 16 2 C 0.05 0.75 5.55 -3.83 -0.02 0.73 16 3 N -0.53 -9.58 4.36 -236.06 -1.03 -10.61 16 4 C 0.06 1.29 4.72 -3.82 -0.02 1.27 16 5 C 0.03 0.75 4.94 -27.88 -0.14 0.62 16 6 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 7 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 10 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 14 C 0.09 1.38 4.94 -4.97 -0.02 1.35 16 15 C -0.06 -0.92 5.04 -104.61 -0.53 -1.45 16 16 C -0.11 -1.57 8.39 -39.57 -0.33 -1.90 16 17 C -0.17 -2.40 9.04 -39.46 -0.36 -2.76 16 18 C 0.09 1.40 6.70 -39.12 -0.26 1.14 16 19 O -0.31 -4.52 10.28 -34.23 -0.35 -4.87 16 20 C 0.03 0.27 9.81 101.05 0.99 1.26 16 21 C 0.09 1.47 6.70 -39.12 -0.26 1.21 16 22 O -0.31 -4.59 10.28 -34.23 -0.35 -4.95 16 23 C 0.03 0.28 9.81 101.05 0.99 1.27 16 24 C -0.15 -2.18 8.71 -39.46 -0.34 -2.52 16 25 H 0.04 0.53 6.88 -51.92 -0.36 0.18 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.69 5.88 -51.93 -0.31 1.38 16 29 H 0.02 0.38 8.00 -51.93 -0.42 -0.03 16 30 H 0.06 1.38 6.33 -51.92 -0.33 1.06 16 31 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 32 H 0.02 0.46 6.25 -51.93 -0.32 0.14 16 33 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.04 0.56 7.90 -51.93 -0.41 0.15 16 36 H 0.07 0.98 6.53 -51.93 -0.34 0.64 16 37 H 0.12 1.71 7.98 -52.49 -0.42 1.29 16 38 H 0.13 1.52 6.30 -52.48 -0.33 1.19 16 39 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.44 7.68 -51.93 -0.40 0.04 16 42 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 43 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.13 1.74 6.30 -52.48 -0.33 1.40 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -32.81 361.83 -8.14 -40.95 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.23 Total: -1.55 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -0.34 Total: -14.87 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.29 Total: -36.94 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.70 Total: -9.82 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.81 -8.14 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053097466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.271 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds