Wall clock time and date at job start Tue Mar 31 2020 06:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46898 * 109.46995 * 2 1 4 4 C 1.46899 * 110.99752 * 199.52684 * 3 2 1 5 5 C 1.53004 * 109.47120 * 66.05052 * 4 3 2 6 6 C 1.50699 * 109.47258 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99940 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99970 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00173 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99997 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47066 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46986 * 119.99891 * 10 8 6 13 13 H 1.48496 * 109.47396 * 239.99898 * 10 8 6 14 14 C 1.46903 * 110.99702 * 75.57942 * 3 2 1 15 15 C 1.50710 * 109.46803 * 199.78835 * 14 3 2 16 16 C 1.38252 * 119.92146 * 264.41725 * 15 14 3 17 17 C 1.38244 * 120.13846 * 179.76966 * 16 15 14 18 18 C 1.38559 * 120.00298 * 0.45879 * 17 16 15 19 19 O 1.35995 * 120.07383 * 179.79046 * 18 17 16 20 20 C 1.42898 * 117.00387 * 359.72812 * 19 18 17 21 21 C 1.39150 * 119.85424 * 359.51961 * 18 17 16 22 22 O 1.35995 * 120.07666 * 180.22916 * 21 18 17 23 23 C 1.42903 * 117.00038 * 179.97438 * 22 21 18 24 24 C 1.38235 * 119.92464 * 84.39117 * 15 14 3 25 25 H 1.09010 * 109.47105 * 294.84765 * 1 2 3 26 26 H 1.08998 * 109.47270 * 54.84928 * 1 2 3 27 27 H 1.09002 * 109.47124 * 174.85674 * 1 2 3 28 28 H 1.09003 * 109.47177 * 240.00412 * 2 1 3 29 29 H 1.08998 * 109.47397 * 120.00461 * 2 1 3 30 30 H 1.09010 * 109.47246 * 186.04740 * 4 3 2 31 31 H 1.08998 * 109.47541 * 306.04652 * 4 3 2 32 32 H 1.08994 * 109.46792 * 299.99631 * 5 4 3 33 33 H 1.09004 * 109.46708 * 59.99880 * 5 4 3 34 34 H 0.96996 * 120.00567 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.47332 * 79.79034 * 14 3 2 36 36 H 1.08998 * 109.47319 * 319.78432 * 14 3 2 37 37 H 1.07998 * 119.93260 * 0.02562 * 16 15 14 38 38 H 1.08010 * 119.99772 * 180.22900 * 17 16 15 39 39 H 1.09001 * 109.47282 * 59.99280 * 20 19 18 40 40 H 1.08997 * 109.47534 * 180.02562 * 20 19 18 41 41 H 1.09007 * 109.46853 * 299.99867 * 20 19 18 42 42 H 1.08994 * 109.46981 * 299.99917 * 23 22 21 43 43 H 1.09006 * 109.46856 * 60.00498 * 23 22 21 44 44 H 1.09005 * 109.46807 * 180.02562 * 23 22 21 45 45 H 1.08004 * 120.00409 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4137 1.4504 -0.4584 5 6 3.4865 1.0387 -1.9302 6 6 4.9165 1.1064 -2.4007 7 1 5.6956 1.4129 -1.7183 8 6 5.2303 0.7781 -3.7025 9 7 4.2815 0.4064 -4.5338 10 14 7.0028 0.8628 -4.2859 11 1 7.8718 1.3062 -3.1663 12 1 7.4369 -0.4806 -4.7467 13 1 7.1090 1.8293 -5.4082 14 6 1.8730 1.9951 1.3283 15 6 1.9122 3.4961 1.1986 16 6 3.1009 4.1744 1.3940 17 6 3.1430 5.5507 1.2715 18 6 1.9903 6.2543 0.9617 19 8 2.0291 7.6087 0.8451 20 6 3.2915 8.2426 1.0611 21 6 0.7939 5.5715 0.7646 22 8 -0.3392 6.2572 0.4558 23 6 -1.5303 5.4905 0.2670 24 6 0.7596 4.1914 0.8842 25 1 -0.3634 0.4319 0.9326 26 1 -0.3634 0.5916 -0.8402 27 1 -0.3633 -1.0235 -0.0921 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.7853 2.4692 -0.3473 31 1 4.0248 0.7737 0.1389 32 1 3.1150 0.0200 -2.0412 33 1 2.8754 1.7155 -2.5274 34 1 4.5022 0.1750 -5.4496 35 1 2.6883 1.6646 1.9719 36 1 0.9207 1.6928 1.7639 37 1 3.9995 3.6275 1.6388 38 1 4.0737 6.0780 1.4210 39 1 4.0157 7.8655 0.3390 40 1 3.1827 9.3202 0.9384 41 1 3.6389 8.0255 2.0712 42 1 -1.3826 4.7853 -0.5509 43 1 -1.7591 4.9435 1.1817 44 1 -2.3576 6.1580 0.0258 45 1 -0.1678 3.6591 0.7320 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053097466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:42 Heat of formation + Delta-G solvation = -70.576063 kcal Electronic energy + Delta-G solvation = -23921.291618 eV Core-core repulsion = 20517.763771 eV Total energy + Delta-G solvation = -3403.527847 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52821 -39.42684 -39.28747 -37.47573 -35.23209 -32.52447 -32.45065 -31.25707 -30.12873 -28.37187 -28.04928 -26.82183 -25.22255 -23.49650 -23.03000 -22.32471 -21.12766 -19.36981 -18.59520 -18.00200 -17.65760 -17.00244 -16.61327 -16.33882 -16.15868 -16.09900 -15.70082 -15.61596 -15.32586 -14.78398 -14.50254 -14.39458 -14.09823 -13.52508 -13.42322 -13.32457 -13.07069 -12.89884 -12.75386 -12.61819 -12.52627 -12.40243 -12.04898 -12.03905 -11.97440 -11.88417 -11.70629 -11.65738 -11.19294 -11.18745 -10.52404 -9.62630 -9.14484 -8.71665 -8.19217 -6.30044 0.34527 0.44656 1.39321 1.39941 1.52920 2.38623 2.40042 2.40356 2.66880 3.14302 3.29888 3.78157 3.89292 4.09889 4.14922 4.22853 4.30883 4.40742 4.41628 4.42884 4.43465 4.46834 4.52124 4.57879 4.65477 4.68916 4.73922 4.75490 4.80034 4.87792 5.01690 5.11032 5.17706 5.20457 5.30682 5.41261 5.47369 5.64073 5.72454 5.73713 5.81584 6.13553 6.15468 6.35425 6.38721 6.64754 6.87468 7.38861 8.93156 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.004469 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.161940 B = 6263.842676 C = 7567.660571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.044 3.956 3 N -0.544 5.544 4 C 0.079 3.921 5 C 0.038 3.962 6 C -0.541 4.541 7 H 0.059 0.941 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.261 1.261 12 H -0.277 1.277 13 H -0.280 1.280 14 C 0.097 3.903 15 C -0.076 4.076 16 C -0.117 4.117 17 C -0.172 4.172 18 C 0.076 3.924 19 O -0.331 6.331 20 C 0.018 3.982 21 C 0.077 3.923 22 O -0.330 6.330 23 C 0.020 3.980 24 C -0.151 4.151 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.020 0.980 32 H -0.003 1.003 33 H -0.015 1.015 34 H 0.263 0.737 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.132 0.868 38 H 0.155 0.845 39 H 0.057 0.943 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.119 0.881 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.747 9.522 15.564 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.083 4.083 3 N -0.269 5.269 4 C -0.048 4.048 5 C 0.001 3.999 6 C -0.579 4.579 7 H 0.077 0.923 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.185 1.185 12 H -0.203 1.203 13 H -0.205 1.205 14 C -0.030 4.030 15 C -0.077 4.077 16 C -0.136 4.136 17 C -0.190 4.190 18 C 0.031 3.969 19 O -0.246 6.246 20 C -0.076 4.076 21 C 0.032 3.968 22 O -0.245 6.245 23 C -0.075 4.075 24 C -0.170 4.170 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.015 0.985 33 H 0.004 0.996 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.150 0.850 38 H 0.172 0.828 39 H 0.076 0.924 40 H 0.137 0.863 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.137 0.863 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.255 10.062 15.006 19.864 hybrid contribution 1.489 -0.787 -0.329 1.716 sum -6.765 9.275 14.678 18.634 Atomic orbital electron populations 1.21701 0.93346 1.01999 1.02147 1.22158 0.97262 0.88486 1.00414 1.62028 1.20975 1.18496 1.25353 1.21975 0.87091 0.99616 0.96112 1.18919 0.94982 0.94556 0.91466 1.21649 0.94487 1.45168 0.96634 0.92273 1.25934 1.01899 0.94744 0.96986 1.70115 1.34486 1.46804 1.05818 0.85426 0.79495 0.77883 0.78410 1.18462 1.20259 1.20530 1.21057 1.02523 0.89743 0.89640 1.19627 0.92879 0.95602 0.99544 1.20998 0.97897 0.93690 1.00986 1.21231 0.97295 0.95099 1.05391 1.18483 0.92456 0.83429 1.02546 1.86103 1.35490 1.16379 1.86603 1.23322 0.83515 0.99030 1.01733 1.18470 0.85849 0.90495 1.01994 1.86099 1.16487 1.36522 1.85366 1.23302 0.84621 0.97845 1.01689 1.21012 1.00548 0.91081 1.04338 0.91319 0.93360 0.91228 0.92849 0.94001 0.91964 0.96168 0.98526 0.99638 0.92838 0.93409 0.88301 0.84995 0.82794 0.92435 0.86336 0.91373 0.92792 0.91352 0.86259 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 9.95 71.98 0.72 -2.72 16 2 C 0.04 1.44 5.55 86.30 0.48 1.92 16 3 N -0.54 -19.34 4.36 -900.76 -3.92 -23.27 16 4 C 0.08 3.41 4.72 86.30 0.41 3.82 16 5 C 0.04 2.08 4.94 29.85 0.15 2.22 16 6 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 7 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 8 C 0.00 0.13 5.46 84.65 0.46 0.59 16 9 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 10 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 11 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 14 C 0.10 2.72 4.94 85.56 0.42 3.15 16 15 C -0.08 -2.22 5.04 -19.86 -0.10 -2.32 16 16 C -0.12 -3.35 8.39 22.27 0.19 -3.16 16 17 C -0.17 -4.68 9.04 22.35 0.20 -4.48 16 18 C 0.08 2.32 6.70 22.57 0.15 2.47 16 19 O -0.33 -9.47 10.28 -79.63 -0.82 -10.29 16 20 C 0.02 0.34 9.81 113.37 1.11 1.45 16 21 C 0.08 2.38 6.70 22.57 0.15 2.53 16 22 O -0.33 -9.67 10.28 -79.63 -0.82 -10.49 16 23 C 0.02 0.39 9.81 113.37 1.11 1.50 16 24 C -0.15 -4.33 8.71 22.35 0.19 -4.13 16 25 H 0.07 1.43 6.88 -2.38 -0.02 1.41 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 2.10 5.88 -2.39 -0.01 2.09 16 29 H 0.04 1.21 8.00 -2.39 -0.02 1.19 16 30 H 0.06 2.68 6.33 -2.38 -0.02 2.66 16 31 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 32 H 0.00 -0.20 6.25 -2.39 -0.01 -0.22 16 33 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.05 1.27 7.90 -2.38 -0.02 1.25 16 36 H 0.10 2.28 6.53 -2.39 -0.02 2.27 16 37 H 0.13 3.47 7.98 -2.91 -0.02 3.45 16 38 H 0.15 3.31 6.30 -2.91 -0.02 3.29 16 39 H 0.06 1.02 7.65 -2.39 -0.02 1.00 16 40 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 1.02 7.68 -2.38 -0.02 1.00 16 42 H 0.05 1.10 7.66 -2.39 -0.02 1.08 16 43 H 0.07 1.11 7.66 -2.38 -0.02 1.09 16 44 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 45 H 0.15 3.64 6.30 -2.91 -0.02 3.62 16 Total: -1.00 -72.17 361.83 3.59 -68.57 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.96 Total: 14.39 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 5.88 Total: -28.27 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -3.64 Total: -80.72 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -1.64 Total: -20.77 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -72.17 3.59 -68.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053097466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.001 kcal (2) G-P(sol) polarization free energy of solvation -72.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds