Wall clock time and date at job start Tue Mar 31 2020 06:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 114.00161 * 2 1 4 4 C 1.53001 * 109.46878 * 184.76857 * 3 2 1 5 5 N 1.46902 * 109.46985 * 65.87202 * 4 3 2 6 6 C 1.46901 * 111.00222 * 73.38356 * 5 4 3 7 7 C 1.53000 * 109.47141 * 204.81140 * 6 5 4 8 8 O 1.42901 * 109.47334 * 63.71341 * 7 6 5 9 9 C 1.42896 * 114.00061 * 175.02159 * 8 7 6 10 10 C 1.46898 * 110.99998 * 197.33697 * 5 4 3 11 11 C 1.50700 * 109.47234 * 163.10842 * 10 5 4 12 12 C 1.37650 * 120.12839 * 287.43577 * 11 10 5 13 13 C 1.38610 * 120.24345 * 180.31890 * 12 11 10 14 14 C 1.38654 * 120.50696 * 359.67840 * 13 12 11 15 15 C 1.37601 * 120.24920 * 359.97438 * 14 13 12 16 16 C 1.40698 * 120.12928 * 107.13128 * 11 10 5 17 17 C 1.41395 * 120.24164 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99857 * 25.39631 * 17 16 11 19 19 C 1.39945 * 120.00074 * 205.39353 * 17 16 11 20 20 N 1.30821 * 119.99805 * 19.63153 * 19 17 16 21 21 Si 1.86797 * 120.00123 * 199.63461 * 19 17 16 22 22 H 1.48498 * 109.47497 * 265.00964 * 21 19 17 23 23 H 1.48505 * 109.47032 * 25.01263 * 21 19 17 24 24 H 1.48505 * 109.46988 * 145.00793 * 21 19 17 25 25 H 1.09001 * 109.46398 * 64.80541 * 1 2 3 26 26 H 1.08994 * 109.47496 * 184.80106 * 1 2 3 27 27 H 1.09004 * 109.47196 * 304.80955 * 1 2 3 28 28 H 1.08998 * 109.47193 * 64.76821 * 3 2 1 29 29 H 1.08995 * 109.46589 * 304.76936 * 3 2 1 30 30 H 1.09001 * 109.47511 * 305.87224 * 4 3 2 31 31 H 1.08993 * 109.47045 * 185.86647 * 4 3 2 32 32 H 1.08999 * 109.47068 * 324.80872 * 6 5 4 33 33 H 1.08997 * 109.46733 * 84.81018 * 6 5 4 34 34 H 1.08999 * 109.46960 * 183.71501 * 7 6 5 35 35 H 1.09002 * 109.47051 * 303.71745 * 7 6 5 36 36 H 1.09004 * 109.47210 * 64.72971 * 9 8 7 37 37 H 1.08996 * 109.47390 * 184.72578 * 9 8 7 38 38 H 1.08995 * 109.47354 * 304.73057 * 9 8 7 39 39 H 1.09001 * 109.47416 * 43.11258 * 10 5 4 40 40 H 1.08995 * 109.47568 * 283.11105 * 10 5 4 41 41 H 1.07996 * 119.87622 * 0.02562 * 12 11 10 42 42 H 1.08007 * 119.74391 * 179.69174 * 13 12 11 43 43 H 1.08001 * 119.88019 * 180.02562 * 14 13 12 44 44 H 1.07994 * 120.12903 * 180.02562 * 15 14 13 45 45 H 0.97008 * 120.00112 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5310 1.1865 -0.1199 5 7 3.8763 0.6271 -1.4336 6 6 3.6745 1.6193 -2.4979 7 6 3.4326 0.9001 -3.8265 8 8 2.2231 0.1434 -3.7453 9 6 1.8439 -0.4799 -4.9740 10 6 5.2541 0.1177 -1.4432 11 6 5.4421 -0.8003 -2.6234 12 6 4.8667 -2.0508 -2.6246 13 6 5.0436 -2.8996 -3.7061 14 6 5.7947 -2.4984 -4.8003 15 6 6.3732 -1.2501 -4.8239 16 6 6.2010 -0.3801 -3.7311 17 6 6.7910 0.9048 -3.7441 18 1 7.0251 1.4009 -2.8137 19 6 7.0714 1.5338 -4.9624 20 7 6.4660 1.1437 -6.0545 21 14 8.3103 2.9302 -5.0291 22 1 7.5980 4.2293 -4.9280 23 1 9.2648 2.7996 -3.8989 24 1 9.0533 2.8718 -6.3136 25 1 -0.3632 0.4375 -0.9300 26 1 -0.3634 -1.0240 0.0860 27 1 -0.3634 0.5867 0.8438 28 1 1.7579 1.8155 0.9296 29 1 1.6227 1.8756 -0.8442 30 1 3.9072 0.5301 0.6648 31 1 3.9819 2.1733 -0.0154 32 1 2.8106 2.2391 -2.2578 33 1 4.5609 2.2481 -2.5812 34 1 3.3485 1.6348 -4.6273 35 1 4.2670 0.2301 -4.0341 36 1 2.5904 -1.2250 -5.2490 37 1 0.8751 -0.9642 -4.8518 38 1 1.7769 0.2740 -5.7583 39 1 5.4447 -0.4320 -0.5215 40 1 5.9499 0.9533 -1.5184 41 1 4.2793 -2.3735 -1.7778 42 1 4.5926 -3.8810 -3.6963 43 1 5.9256 -3.1678 -5.6377 44 1 6.9575 -0.9395 -5.6773 45 1 6.6601 1.5799 -6.8989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057660956.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:46 Heat of formation + Delta-G solvation = -56.963023 kcal Electronic energy + Delta-G solvation = -25489.334932 eV Core-core repulsion = 22086.397391 eV Total energy + Delta-G solvation = -3402.937541 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.71506 -37.51256 -36.61894 -35.64569 -33.63127 -31.06952 -29.78035 -29.46053 -27.97381 -25.97802 -25.59225 -25.12598 -23.66275 -22.09564 -20.89843 -20.22610 -19.26237 -17.10959 -16.20190 -16.09193 -15.55293 -15.38298 -15.09872 -14.64138 -14.49397 -14.38953 -14.01562 -13.60665 -13.59340 -12.93860 -12.71189 -12.52851 -12.10942 -11.87826 -11.65007 -11.57320 -11.37837 -11.25496 -11.16848 -11.04093 -10.87861 -10.76153 -10.51487 -10.43853 -10.20665 -9.87690 -9.38916 -9.32923 -9.24881 -9.11880 -8.54382 -7.43900 -7.24307 -7.16441 -6.76638 -4.33089 2.77606 3.03774 3.05619 3.09459 3.26722 3.91134 4.14968 4.57448 4.68646 4.78859 5.32583 5.43616 5.57904 5.63630 5.66911 5.68892 5.82109 5.90532 5.94208 5.99308 6.11981 6.15195 6.20581 6.26437 6.32813 6.39343 6.46054 6.53667 6.57083 6.62518 6.66842 6.83816 7.11152 7.26016 7.34200 7.41926 7.53209 7.66710 7.80901 7.87906 8.03048 8.07874 8.19172 8.24046 8.37047 8.64769 8.89804 8.99719 10.17116 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.006265 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.289844 B = 4468.034331 C = 5041.403737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.072 3.928 4 C 0.054 3.946 5 N -0.512 5.512 6 C 0.070 3.930 7 C 0.054 3.946 8 O -0.378 6.378 9 C 0.040 3.960 10 C 0.114 3.886 11 C -0.183 4.183 12 C -0.057 4.057 13 C -0.242 4.242 14 C -0.105 4.105 15 C -0.173 4.173 16 C 0.121 3.879 17 C -0.467 4.467 18 H 0.077 0.923 19 C 0.082 3.918 20 N -0.791 5.791 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.261 1.261 24 H -0.276 1.276 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.029 0.971 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.026 0.974 35 H 0.110 0.890 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.025 0.975 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.112 0.888 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.310 2.379 5.740 8.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.285 6.285 3 C -0.006 4.006 4 C -0.074 4.074 5 N -0.236 5.236 6 C -0.057 4.057 7 C -0.022 4.022 8 O -0.297 6.297 9 C -0.058 4.058 10 C -0.012 4.012 11 C -0.185 4.185 12 C -0.076 4.076 13 C -0.262 4.262 14 C -0.124 4.124 15 C -0.192 4.192 16 C 0.118 3.882 17 C -0.497 4.497 18 H 0.095 0.905 19 C -0.136 4.136 20 N -0.416 5.416 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.185 1.185 24 H -0.201 1.201 25 H 0.057 0.943 26 H 0.097 0.903 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.127 0.873 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.130 0.870 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.636 1.879 5.579 8.871 hybrid contribution 0.856 1.657 -0.479 1.926 sum -5.780 3.537 5.100 8.481 Atomic orbital electron populations 1.22632 0.82426 1.01949 0.99173 1.88021 1.18248 1.27136 1.95066 1.22531 0.94216 0.85179 0.98635 1.22088 0.93681 0.98257 0.93375 1.61986 1.25029 1.35328 1.01292 1.22044 0.99257 0.92779 0.91653 1.23047 0.88996 0.95412 0.94729 1.87845 1.42570 1.67998 1.31269 1.22506 0.99413 0.96544 0.87297 1.20859 0.87105 0.96848 0.96416 1.19391 1.05233 0.95620 0.98219 1.20310 0.96946 0.93653 0.96712 1.20371 1.09227 0.99574 0.96988 1.20663 0.98827 0.96322 0.96541 1.21170 1.04432 0.92836 1.00804 1.17349 0.88346 0.92325 0.90161 1.19475 1.36322 1.01111 0.92782 0.90462 1.25789 0.94706 0.97824 0.95257 1.69826 1.33736 1.37816 1.00265 0.86511 0.81526 0.81113 0.78882 1.19792 1.18515 1.20120 0.94317 0.90260 0.95245 0.94266 0.93367 0.90554 0.94162 0.92804 0.92853 0.95570 0.87260 0.94119 0.91375 0.95654 0.92679 0.93807 0.89185 0.89875 0.89888 0.87043 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.15 10.66 -35.23 -0.38 -6.53 16 3 C 0.07 1.06 6.09 37.16 0.23 1.29 16 4 C 0.05 0.86 5.33 -3.82 -0.02 0.84 16 5 N -0.51 -9.87 4.27 -236.08 -1.01 -10.87 16 6 C 0.07 1.39 5.21 -3.82 -0.02 1.37 16 7 C 0.05 1.19 5.84 37.16 0.22 1.41 16 8 O -0.38 -8.20 10.63 -35.23 -0.37 -8.57 16 9 C 0.04 0.75 11.01 101.05 1.11 1.86 16 10 C 0.11 2.33 4.95 -4.98 -0.02 2.30 16 11 C -0.18 -4.22 3.48 -103.91 -0.36 -4.58 16 12 C -0.06 -1.32 9.72 -39.66 -0.39 -1.71 16 13 C -0.24 -5.51 10.05 -39.29 -0.39 -5.91 16 14 C -0.10 -2.45 10.02 -39.66 -0.40 -2.85 16 15 C -0.17 -4.33 8.69 -38.87 -0.34 -4.67 16 16 C 0.12 2.98 3.43 -106.82 -0.37 2.61 16 17 C -0.47 -11.34 8.04 -37.74 -0.30 -11.64 16 18 H 0.08 1.83 6.13 -52.48 -0.32 1.51 16 19 C 0.08 1.93 5.09 -17.34 -0.09 1.84 16 20 N -0.79 -19.22 11.15 55.55 0.62 -18.60 16 21 Si 0.89 17.94 29.60 -169.99 -5.03 12.91 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.74 6.52 -51.93 -0.34 0.40 16 30 H 0.08 1.17 7.68 -51.93 -0.40 0.77 16 31 H 0.04 0.57 8.03 -51.93 -0.42 0.16 16 32 H 0.05 0.97 6.26 -51.93 -0.32 0.65 16 33 H 0.05 1.08 7.45 -51.93 -0.39 0.70 16 34 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.11 2.69 3.26 -51.93 -0.17 2.52 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 39 H 0.05 1.06 7.69 -51.93 -0.40 0.66 16 40 H 0.04 0.91 5.34 -51.93 -0.28 0.63 16 41 H 0.09 2.01 8.06 -52.49 -0.42 1.58 16 42 H 0.08 1.73 8.06 -52.48 -0.42 1.30 16 43 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.11 2.90 6.32 -52.49 -0.33 2.56 16 45 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 LS Contribution 357.83 15.07 5.39 5.39 Total: -1.00 -27.04 357.83 -7.96 -35.00 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.15 Total: 7.54 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -0.03 Total: -16.26 kcal Atomic # 7 Polarization: -29.09 SS G_CDS: -0.39 Total: -29.47 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.75 Total: -15.10 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.04 -7.96 -35.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057660956.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.967 kcal (2) G-P(sol) polarization free energy of solvation -27.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds