Wall clock time and date at job start Tue Mar 31 2020 06:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 114.00161 * 2 1 4 4 C 1.53001 * 109.46878 * 184.76857 * 3 2 1 5 5 N 1.46902 * 109.46985 * 65.87202 * 4 3 2 6 6 C 1.46901 * 111.00222 * 73.38356 * 5 4 3 7 7 C 1.53000 * 109.47141 * 204.81140 * 6 5 4 8 8 O 1.42901 * 109.47334 * 63.71341 * 7 6 5 9 9 C 1.42896 * 114.00061 * 175.02159 * 8 7 6 10 10 C 1.46898 * 110.99998 * 197.33697 * 5 4 3 11 11 C 1.50700 * 109.47234 * 163.10842 * 10 5 4 12 12 C 1.37650 * 120.12839 * 287.43577 * 11 10 5 13 13 C 1.38610 * 120.24345 * 180.31890 * 12 11 10 14 14 C 1.38654 * 120.50696 * 359.67840 * 13 12 11 15 15 C 1.37601 * 120.24920 * 359.97438 * 14 13 12 16 16 C 1.40698 * 120.12928 * 107.13128 * 11 10 5 17 17 C 1.41395 * 120.24164 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99857 * 25.39631 * 17 16 11 19 19 C 1.39945 * 120.00074 * 205.39353 * 17 16 11 20 20 N 1.30821 * 119.99805 * 19.63153 * 19 17 16 21 21 Si 1.86797 * 120.00123 * 199.63461 * 19 17 16 22 22 H 1.48498 * 109.47497 * 265.00964 * 21 19 17 23 23 H 1.48505 * 109.47032 * 25.01263 * 21 19 17 24 24 H 1.48505 * 109.46988 * 145.00793 * 21 19 17 25 25 H 1.09001 * 109.46398 * 64.80541 * 1 2 3 26 26 H 1.08994 * 109.47496 * 184.80106 * 1 2 3 27 27 H 1.09004 * 109.47196 * 304.80955 * 1 2 3 28 28 H 1.08998 * 109.47193 * 64.76821 * 3 2 1 29 29 H 1.08995 * 109.46589 * 304.76936 * 3 2 1 30 30 H 1.09001 * 109.47511 * 305.87224 * 4 3 2 31 31 H 1.08993 * 109.47045 * 185.86647 * 4 3 2 32 32 H 1.08999 * 109.47068 * 324.80872 * 6 5 4 33 33 H 1.08997 * 109.46733 * 84.81018 * 6 5 4 34 34 H 1.08999 * 109.46960 * 183.71501 * 7 6 5 35 35 H 1.09002 * 109.47051 * 303.71745 * 7 6 5 36 36 H 1.09004 * 109.47210 * 64.72971 * 9 8 7 37 37 H 1.08996 * 109.47390 * 184.72578 * 9 8 7 38 38 H 1.08995 * 109.47354 * 304.73057 * 9 8 7 39 39 H 1.09001 * 109.47416 * 43.11258 * 10 5 4 40 40 H 1.08995 * 109.47568 * 283.11105 * 10 5 4 41 41 H 1.07996 * 119.87622 * 0.02562 * 12 11 10 42 42 H 1.08007 * 119.74391 * 179.69174 * 13 12 11 43 43 H 1.08001 * 119.88019 * 180.02562 * 14 13 12 44 44 H 1.07994 * 120.12903 * 180.02562 * 15 14 13 45 45 H 0.97008 * 120.00112 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5310 1.1865 -0.1199 5 7 3.8763 0.6271 -1.4336 6 6 3.6745 1.6193 -2.4979 7 6 3.4326 0.9001 -3.8265 8 8 2.2231 0.1434 -3.7453 9 6 1.8439 -0.4799 -4.9740 10 6 5.2541 0.1177 -1.4432 11 6 5.4421 -0.8003 -2.6234 12 6 4.8667 -2.0508 -2.6246 13 6 5.0436 -2.8996 -3.7061 14 6 5.7947 -2.4984 -4.8003 15 6 6.3732 -1.2501 -4.8239 16 6 6.2010 -0.3801 -3.7311 17 6 6.7910 0.9048 -3.7441 18 1 7.0251 1.4009 -2.8137 19 6 7.0714 1.5338 -4.9624 20 7 6.4660 1.1437 -6.0545 21 14 8.3103 2.9302 -5.0291 22 1 7.5980 4.2293 -4.9280 23 1 9.2648 2.7996 -3.8989 24 1 9.0533 2.8718 -6.3136 25 1 -0.3632 0.4375 -0.9300 26 1 -0.3634 -1.0240 0.0860 27 1 -0.3634 0.5867 0.8438 28 1 1.7579 1.8155 0.9296 29 1 1.6227 1.8756 -0.8442 30 1 3.9072 0.5301 0.6648 31 1 3.9819 2.1733 -0.0154 32 1 2.8106 2.2391 -2.2578 33 1 4.5609 2.2481 -2.5812 34 1 3.3485 1.6348 -4.6273 35 1 4.2670 0.2301 -4.0341 36 1 2.5904 -1.2250 -5.2490 37 1 0.8751 -0.9642 -4.8518 38 1 1.7769 0.2740 -5.7583 39 1 5.4447 -0.4320 -0.5215 40 1 5.9499 0.9533 -1.5184 41 1 4.2793 -2.3735 -1.7778 42 1 4.5926 -3.8810 -3.6963 43 1 5.9256 -3.1678 -5.6377 44 1 6.9575 -0.9395 -5.6773 45 1 6.6601 1.5799 -6.8989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057660956.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:45 Heat of formation + Delta-G solvation = -72.875849 kcal Electronic energy + Delta-G solvation = -25490.024964 eV Core-core repulsion = 22086.397391 eV Total energy + Delta-G solvation = -3403.627573 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.34890 -38.85771 -38.25420 -37.13581 -35.44181 -32.66823 -31.39380 -31.18559 -29.47349 -27.38481 -27.01889 -26.77538 -25.25433 -23.54306 -22.72223 -21.74394 -20.98541 -18.93577 -17.52886 -17.40172 -17.26617 -16.95992 -16.53050 -16.23553 -16.01313 -15.81049 -15.52624 -15.26230 -15.17581 -14.47721 -14.27929 -14.19168 -13.61305 -13.41350 -13.22043 -13.13562 -12.80634 -12.79186 -12.70669 -12.62989 -12.39929 -12.31503 -12.14714 -11.90743 -11.68343 -11.50676 -11.18426 -11.06239 -10.91412 -10.39848 -10.25210 -9.14272 -8.98643 -8.88288 -8.55050 -6.18801 1.04823 1.23440 1.41081 1.49986 1.57168 2.23167 2.83872 3.04436 3.13820 3.22751 3.88916 4.14744 4.24595 4.37697 4.45811 4.49283 4.49916 4.58041 4.60203 4.61421 4.65684 4.67054 4.70084 4.77386 4.82085 4.84263 4.90522 4.93189 4.94904 4.97725 5.07065 5.10191 5.32101 5.46400 5.49985 5.60548 5.84543 6.11936 6.17231 6.30720 6.31459 6.40957 6.52697 6.57416 6.61018 6.81113 7.06053 7.16305 8.40460 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.006265 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.289844 B = 4468.034331 C = 5041.403737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.400 6.400 3 C 0.074 3.926 4 C 0.051 3.949 5 N -0.522 5.522 6 C 0.078 3.922 7 C 0.058 3.942 8 O -0.388 6.388 9 C 0.039 3.961 10 C 0.119 3.881 11 C -0.182 4.182 12 C -0.067 4.067 13 C -0.245 4.245 14 C -0.111 4.111 15 C -0.198 4.198 16 C 0.106 3.894 17 C -0.483 4.483 18 H 0.078 0.922 19 C 0.048 3.952 20 N -0.817 5.817 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.261 1.261 24 H -0.274 1.274 25 H 0.033 0.967 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.014 0.986 35 H 0.086 0.914 36 H 0.018 0.982 37 H 0.098 0.902 38 H 0.034 0.966 39 H 0.067 0.933 40 H 0.037 0.963 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.112 3.167 7.114 10.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.319 6.319 3 C -0.003 4.003 4 C -0.076 4.076 5 N -0.246 5.246 6 C -0.050 4.050 7 C -0.019 4.019 8 O -0.307 6.307 9 C -0.058 4.058 10 C -0.007 4.007 11 C -0.184 4.184 12 C -0.085 4.085 13 C -0.264 4.264 14 C -0.130 4.130 15 C -0.217 4.217 16 C 0.104 3.896 17 C -0.513 4.513 18 H 0.095 0.905 19 C -0.168 4.168 20 N -0.443 5.443 21 Si 0.781 3.219 22 H -0.191 1.191 23 H -0.184 1.184 24 H -0.199 1.199 25 H 0.051 0.949 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.032 0.968 35 H 0.104 0.896 36 H 0.037 0.963 37 H 0.116 0.884 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.115 0.885 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.452 2.660 6.964 10.541 hybrid contribution 1.014 1.349 -0.903 1.914 sum -6.438 4.009 6.061 9.709 Atomic orbital electron populations 1.22767 0.80718 1.02991 0.99939 1.87965 1.20273 1.28329 1.95315 1.22572 0.93126 0.84733 0.99899 1.22233 0.94834 0.99195 0.91366 1.61893 1.23937 1.35837 1.02921 1.21919 0.99506 0.92620 0.90926 1.22923 0.88410 0.94738 0.95792 1.87821 1.42198 1.68026 1.32635 1.22625 1.00101 0.96264 0.86783 1.20772 0.87918 0.96313 0.95715 1.19678 1.04133 0.96066 0.98507 1.20475 0.97159 0.93822 0.97081 1.20617 1.08796 1.00440 0.96597 1.20850 0.98646 0.96087 0.97392 1.21154 1.05699 0.93979 1.00900 1.17548 0.88819 0.92640 0.90612 1.19603 1.37178 1.01286 0.93226 0.90453 1.26455 0.95745 0.99897 0.94680 1.69889 1.34617 1.39011 1.00820 0.85537 0.79195 0.78421 0.78725 1.19127 1.18436 1.19854 0.94856 0.89495 0.92796 0.91087 0.94126 0.90000 0.92244 0.91032 0.93798 0.96816 0.89648 0.96297 0.88354 0.94768 0.91440 0.94471 0.88504 0.87855 0.88278 0.88832 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -12.55 10.66 -148.98 -1.59 -14.14 16 3 C 0.07 1.98 6.09 71.98 0.44 2.41 16 4 C 0.05 1.50 5.33 86.30 0.46 1.96 16 5 N -0.52 -19.45 4.27 -900.81 -3.84 -23.29 16 6 C 0.08 3.03 5.21 86.30 0.45 3.48 16 7 C 0.06 2.56 5.84 71.98 0.42 2.98 16 8 O -0.39 -16.63 10.63 -148.98 -1.58 -18.21 16 9 C 0.04 1.46 11.01 113.37 1.25 2.71 16 10 C 0.12 4.80 4.95 85.56 0.42 5.22 16 11 C -0.18 -8.42 3.48 -19.40 -0.07 -8.49 16 12 C -0.07 -3.04 9.72 22.22 0.22 -2.82 16 13 C -0.25 -11.07 10.05 22.46 0.23 -10.85 16 14 C -0.11 -5.25 10.02 22.22 0.22 -5.03 16 15 C -0.20 -10.18 8.69 22.73 0.20 -9.98 16 16 C 0.11 5.34 3.43 -21.29 -0.07 5.27 16 17 C -0.48 -23.80 8.04 23.46 0.19 -23.61 16 18 H 0.08 3.71 6.13 -2.91 -0.02 3.69 16 19 C 0.05 2.27 5.09 85.26 0.43 2.71 16 20 N -0.82 -40.59 11.15 21.83 0.24 -40.35 16 21 Si 0.96 36.81 29.60 68.60 2.03 38.84 16 22 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 24 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 25 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.04 1.14 6.52 -2.39 -0.02 1.13 16 30 H 0.08 2.30 7.68 -2.39 -0.02 2.28 16 31 H 0.06 1.52 8.03 -2.39 -0.02 1.50 16 32 H 0.07 2.48 6.26 -2.39 -0.01 2.47 16 33 H 0.04 1.77 7.45 -2.39 -0.02 1.75 16 34 H 0.01 0.62 8.12 -2.39 -0.02 0.60 16 35 H 0.09 4.28 3.26 -2.39 -0.01 4.27 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.03 1.19 8.12 -2.39 -0.02 1.17 16 39 H 0.07 2.50 7.69 -2.39 -0.02 2.49 16 40 H 0.04 1.53 5.34 -2.39 -0.01 1.52 16 41 H 0.10 4.23 8.06 -2.91 -0.02 4.21 16 42 H 0.10 4.16 8.06 -2.91 -0.02 4.14 16 43 H 0.10 4.22 8.06 -2.91 -0.02 4.19 16 44 H 0.09 5.06 6.32 -2.91 -0.02 5.04 16 45 H 0.28 12.99 8.30 -92.70 -0.77 12.22 16 Total: -1.00 -57.96 357.83 2.26 -55.71 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.97 Total: 33.47 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 6.03 Total: -32.04 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -3.60 Total: -63.63 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -3.17 Total: -32.35 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Total: -57.96 2.26 -55.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057660956.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.169 kcal (2) G-P(sol) polarization free energy of solvation -57.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds