Wall clock time and date at job start Tue Mar 31 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46903 * 109.46824 * 2 1 4 4 C 1.46895 * 111.00174 * 299.78272 * 3 2 1 5 5 C 1.53003 * 109.46941 * 287.67067 * 4 3 2 6 6 C 1.46908 * 110.99728 * 63.73250 * 3 2 1 7 7 C 1.52995 * 109.46880 * 77.23558 * 6 3 2 8 8 H 1.08993 * 109.47542 * 52.92894 * 7 6 3 9 9 O 1.42899 * 109.47128 * 292.92612 * 7 6 3 10 10 C 1.52998 * 109.47038 * 172.92684 * 7 6 3 11 11 O 1.42898 * 109.47286 * 184.99573 * 10 7 6 12 12 C 1.35684 * 117.00222 * 179.97438 * 11 10 7 13 13 C 1.39311 * 119.81383 * 359.73162 * 12 11 10 14 14 C 1.36432 * 120.18213 * 179.75654 * 13 12 11 15 15 C 1.40831 * 119.81370 * 0.51022 * 14 13 12 16 16 C 1.41219 * 120.18250 * 179.71831 * 15 14 13 17 17 H 1.07992 * 119.99900 * 28.59349 * 16 15 14 18 18 C 1.39894 * 119.99844 * 208.58969 * 16 15 14 19 19 N 1.30875 * 120.00268 * 13.15975 * 18 16 15 20 20 Si 1.86801 * 119.99490 * 193.15812 * 18 16 15 21 21 H 1.48493 * 109.47580 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46901 * 120.00283 * 20 18 16 23 23 H 1.48499 * 109.46902 * 239.99735 * 20 18 16 24 24 C 1.40837 * 119.63957 * 359.74700 * 15 14 13 25 25 C 1.36434 * 119.81018 * 359.97438 * 24 15 14 26 26 H 1.09008 * 109.46869 * 181.53130 * 1 2 3 27 27 H 1.08997 * 109.47671 * 301.53037 * 1 2 3 28 28 H 1.09000 * 109.47496 * 61.53155 * 1 2 3 29 29 H 1.08994 * 109.46867 * 240.00134 * 2 1 3 30 30 H 1.08993 * 109.46965 * 120.00161 * 2 1 3 31 31 H 1.09002 * 109.47785 * 47.66749 * 4 3 2 32 32 H 1.09002 * 109.47524 * 167.67511 * 4 3 2 33 33 H 1.09000 * 109.46893 * 66.71827 * 5 4 3 34 34 H 1.09002 * 109.47264 * 186.71952 * 5 4 3 35 35 H 1.09000 * 109.47211 * 306.72358 * 5 4 3 36 36 H 1.09000 * 109.47145 * 317.23073 * 6 3 2 37 37 H 1.08999 * 109.46570 * 197.23474 * 6 3 2 38 38 H 0.96700 * 113.99994 * 299.99939 * 9 7 6 39 39 H 1.08996 * 109.47721 * 305.00126 * 10 7 6 40 40 H 1.09004 * 109.47304 * 64.99812 * 10 7 6 41 41 H 1.07997 * 119.91117 * 0.02562 * 13 12 11 42 42 H 1.08005 * 120.09777 * 180.25499 * 14 13 12 43 43 H 0.97002 * 119.99752 * 179.97438 * 19 18 16 44 44 H 1.08004 * 120.09039 * 179.97438 * 24 15 14 45 45 H 1.07996 * 119.90807 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5529 2.1084 -1.1902 5 6 2.3058 1.6025 -2.4224 6 6 1.6228 2.0836 1.2299 7 6 2.5277 1.6420 2.3818 8 1 3.5711 1.7689 2.0935 9 8 2.2802 0.2669 2.6816 10 6 2.2328 2.4945 3.6176 11 8 3.1556 2.1621 4.6568 12 6 3.0306 2.8331 5.8295 13 6 2.0376 3.7997 5.9720 14 6 1.9020 4.4754 7.1494 15 6 2.7762 4.2010 8.2189 16 6 2.6467 4.9000 9.4391 17 1 1.6818 5.2749 9.7468 18 6 3.7683 5.1066 10.2493 19 7 4.9680 4.8888 9.7740 20 14 3.5533 5.6933 12.0097 21 1 2.1073 5.8634 12.3018 22 1 4.1311 4.6902 12.9399 23 1 4.2508 6.9923 12.1871 24 6 3.7808 3.2260 8.0647 25 6 3.8993 2.5553 6.8825 26 1 -0.3633 -1.0274 0.0275 27 1 -0.3634 0.5374 0.8759 28 1 -0.3634 0.4898 -0.9034 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.4843 1.9391 -1.3226 32 1 1.7388 3.1750 -1.0634 33 1 2.0269 0.5673 -2.6189 34 1 2.0479 2.2183 -3.2840 35 1 3.3792 1.6615 -2.2419 36 1 0.5871 1.8408 1.4677 37 1 1.7194 3.1595 1.0838 38 1 1.3692 0.0799 2.9466 39 1 2.3356 3.5496 3.3642 40 1 1.2160 2.3003 3.9589 41 1 1.3705 4.0118 5.1496 42 1 1.1291 5.2216 7.2598 43 1 5.7457 5.0324 10.3357 44 1 4.4555 3.0100 8.8800 45 1 4.6693 1.8077 6.7624 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060943193.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:17 Heat of formation + Delta-G solvation = -67.959992 kcal Electronic energy + Delta-G solvation = -23198.717430 eV Core-core repulsion = 19795.303024 eV Total energy + Delta-G solvation = -3403.414406 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.47723 -38.57144 -36.82165 -35.84633 -33.27507 -31.66342 -31.42940 -29.86125 -29.10522 -28.47550 -25.49421 -24.52353 -24.06165 -22.00036 -20.69075 -20.58944 -20.09016 -17.34197 -17.10655 -16.76808 -16.41622 -15.90317 -15.62466 -15.19952 -14.56398 -14.43517 -13.94645 -13.86796 -13.74220 -13.41868 -13.07457 -12.83086 -12.36876 -12.26248 -12.15684 -12.10252 -12.01231 -11.75985 -11.60299 -11.41943 -11.28797 -11.16605 -10.95437 -10.81974 -10.73079 -10.63564 -9.94145 -9.79049 -9.74945 -9.30746 -9.05986 -8.44771 -7.64171 -6.97082 -6.67263 -4.25882 2.78392 2.94904 3.10395 3.15504 3.20442 3.47328 3.97804 4.11233 4.42266 4.66178 4.70097 4.76397 4.94383 5.00553 5.04051 5.11961 5.16246 5.23406 5.30954 5.36977 5.38607 5.48860 5.62733 5.66702 5.69305 5.76772 5.84387 5.93002 6.05418 6.07088 6.20373 6.24051 6.72979 6.86275 6.91094 6.98087 7.12106 7.20643 7.46326 7.56973 7.65201 7.78665 8.02400 8.21626 8.46249 8.66842 8.92324 8.99575 10.28192 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.044092 B = 0.002456 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.876242 B =11398.875531 C =11447.125819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.033 3.967 3 N -0.528 5.528 4 C 0.041 3.959 5 C -0.146 4.146 6 C 0.021 3.979 7 C 0.118 3.882 8 H 0.113 0.887 9 O -0.545 6.545 10 C 0.039 3.961 11 O -0.317 6.317 12 C -0.003 4.003 13 C -0.172 4.172 14 C -0.194 4.194 15 C 0.087 3.913 16 C -0.465 4.465 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.806 5.806 20 Si 0.909 3.091 21 H -0.262 1.262 22 H -0.273 1.273 23 H -0.276 1.276 24 C -0.126 4.126 25 C -0.122 4.122 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.367 0.633 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.279 0.721 44 H 0.125 0.875 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 -5.903 -17.362 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.095 4.095 3 N -0.251 5.251 4 C -0.087 4.087 5 C -0.204 4.204 6 C -0.108 4.108 7 C 0.058 3.942 8 H 0.131 0.869 9 O -0.350 6.350 10 C -0.038 4.038 11 O -0.232 6.232 12 C -0.046 4.046 13 C -0.190 4.190 14 C -0.214 4.214 15 C 0.085 3.915 16 C -0.496 4.496 17 H 0.094 0.906 18 C -0.143 4.143 19 N -0.433 5.433 20 Si 0.733 3.267 21 H -0.186 1.186 22 H -0.198 1.198 23 H -0.201 1.201 24 C -0.146 4.146 25 C -0.141 4.141 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.214 0.786 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.143 0.857 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.330 -6.079 -17.512 19.289 hybrid contribution -1.764 0.801 0.869 2.124 sum -7.094 -5.278 -16.643 18.846 Atomic orbital electron populations 1.22443 0.98872 1.02311 1.01653 1.22534 0.92339 0.90055 1.04523 1.62145 1.59413 1.02490 1.01076 1.22217 0.97503 0.98194 0.90740 1.21750 1.01506 1.00818 0.96293 1.22793 0.97678 0.99289 0.90999 1.21927 1.01178 0.80955 0.90098 0.86874 1.86623 1.33851 1.25190 1.89307 1.23111 0.93301 0.98958 0.88474 1.85898 1.54406 1.61889 1.21015 1.18653 1.00683 0.99078 0.86213 1.20396 0.99890 1.00224 0.98528 1.20605 1.04307 1.03163 0.93324 1.17610 0.91030 0.90653 0.92232 1.19466 0.95285 1.31963 1.02863 0.90626 1.25856 0.94697 0.93775 0.99979 1.69815 0.98766 1.38027 1.36672 0.86259 0.79574 0.78728 0.82090 1.18593 1.19826 1.20113 1.20991 1.01225 0.96178 0.96189 1.19859 0.99230 1.02250 0.92724 0.92007 0.92539 0.92752 0.91105 0.87666 0.94311 0.91109 0.92950 0.92549 0.91694 0.93429 0.89934 0.78643 0.92424 0.93171 0.88961 0.88741 0.91064 0.85686 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 9.31 37.16 0.35 -1.15 16 2 C 0.03 0.30 5.72 -3.82 -0.02 0.28 16 3 N -0.53 -5.19 4.58 -234.63 -1.08 -6.26 16 4 C 0.04 0.34 5.53 -3.83 -0.02 0.32 16 5 C -0.15 -1.10 9.83 37.16 0.37 -0.74 16 6 C 0.02 0.21 4.68 -3.82 -0.02 0.19 16 7 C 0.12 1.49 3.46 -26.73 -0.09 1.40 16 8 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 9 O -0.55 -7.04 10.52 -40.09 -0.42 -7.46 16 10 C 0.04 0.59 4.36 37.16 0.16 0.75 16 11 O -0.32 -6.52 10.09 -23.61 -0.24 -6.76 16 12 C 0.00 -0.07 6.71 -38.79 -0.26 -0.33 16 13 C -0.17 -3.87 8.96 -39.83 -0.36 -4.23 16 14 C -0.19 -4.79 9.74 -39.25 -0.38 -5.17 16 15 C 0.09 2.34 5.54 -106.80 -0.59 1.75 16 16 C -0.47 -12.44 9.04 -37.83 -0.34 -12.78 16 17 H 0.08 1.94 7.88 -52.49 -0.41 1.53 16 18 C 0.07 1.85 5.20 -17.34 -0.09 1.76 16 19 N -0.81 -21.16 10.95 55.54 0.61 -20.55 16 20 Si 0.91 18.91 29.58 -169.99 -5.03 13.89 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 24 C -0.13 -3.34 8.61 -39.25 -0.34 -3.67 16 25 C -0.12 -2.99 9.92 -39.83 -0.40 -3.39 16 26 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.06 0.44 6.12 -51.93 -0.32 0.13 16 28 H 0.05 0.41 6.24 -51.93 -0.32 0.09 16 29 H 0.07 0.62 6.85 -51.93 -0.36 0.27 16 30 H 0.11 1.08 5.39 -51.93 -0.28 0.80 16 31 H 0.04 0.31 5.78 -51.93 -0.30 0.01 16 32 H 0.07 0.57 7.66 -51.93 -0.40 0.18 16 33 H 0.05 0.39 7.06 -51.93 -0.37 0.02 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.43 5.76 -51.93 -0.30 0.13 16 37 H 0.08 0.78 7.61 -51.93 -0.40 0.38 16 38 H 0.37 3.59 9.05 45.56 0.41 4.00 16 39 H 0.06 0.85 7.63 -51.93 -0.40 0.45 16 40 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 41 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 42 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 43 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 44 H 0.13 3.38 6.29 -52.48 -0.33 3.05 16 45 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -29.28 353.90 -9.02 -38.30 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.16 Total: 8.52 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -2.04 Total: -25.01 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: -0.47 Total: -26.81 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.66 Total: -14.22 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.28 -9.02 -38.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060943193.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.662 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds