Wall clock time and date at job start Tue Mar 31 2020 06:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46903 * 109.46824 * 2 1 4 4 C 1.46895 * 111.00174 * 299.78272 * 3 2 1 5 5 C 1.53003 * 109.46941 * 287.67067 * 4 3 2 6 6 C 1.46908 * 110.99728 * 63.73250 * 3 2 1 7 7 C 1.52995 * 109.46880 * 77.23558 * 6 3 2 8 8 H 1.08993 * 109.47542 * 52.92894 * 7 6 3 9 9 O 1.42899 * 109.47128 * 292.92612 * 7 6 3 10 10 C 1.52998 * 109.47038 * 172.92684 * 7 6 3 11 11 O 1.42898 * 109.47286 * 184.99573 * 10 7 6 12 12 C 1.35684 * 117.00222 * 179.97438 * 11 10 7 13 13 C 1.39311 * 119.81383 * 359.73162 * 12 11 10 14 14 C 1.36432 * 120.18213 * 179.75654 * 13 12 11 15 15 C 1.40831 * 119.81370 * 0.51022 * 14 13 12 16 16 C 1.41219 * 120.18250 * 179.71831 * 15 14 13 17 17 H 1.07992 * 119.99900 * 28.59349 * 16 15 14 18 18 C 1.39894 * 119.99844 * 208.58969 * 16 15 14 19 19 N 1.30875 * 120.00268 * 13.15975 * 18 16 15 20 20 Si 1.86801 * 119.99490 * 193.15812 * 18 16 15 21 21 H 1.48493 * 109.47580 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46901 * 120.00283 * 20 18 16 23 23 H 1.48499 * 109.46902 * 239.99735 * 20 18 16 24 24 C 1.40837 * 119.63957 * 359.74700 * 15 14 13 25 25 C 1.36434 * 119.81018 * 359.97438 * 24 15 14 26 26 H 1.09008 * 109.46869 * 181.53130 * 1 2 3 27 27 H 1.08997 * 109.47671 * 301.53037 * 1 2 3 28 28 H 1.09000 * 109.47496 * 61.53155 * 1 2 3 29 29 H 1.08994 * 109.46867 * 240.00134 * 2 1 3 30 30 H 1.08993 * 109.46965 * 120.00161 * 2 1 3 31 31 H 1.09002 * 109.47785 * 47.66749 * 4 3 2 32 32 H 1.09002 * 109.47524 * 167.67511 * 4 3 2 33 33 H 1.09000 * 109.46893 * 66.71827 * 5 4 3 34 34 H 1.09002 * 109.47264 * 186.71952 * 5 4 3 35 35 H 1.09000 * 109.47211 * 306.72358 * 5 4 3 36 36 H 1.09000 * 109.47145 * 317.23073 * 6 3 2 37 37 H 1.08999 * 109.46570 * 197.23474 * 6 3 2 38 38 H 0.96700 * 113.99994 * 299.99939 * 9 7 6 39 39 H 1.08996 * 109.47721 * 305.00126 * 10 7 6 40 40 H 1.09004 * 109.47304 * 64.99812 * 10 7 6 41 41 H 1.07997 * 119.91117 * 0.02562 * 13 12 11 42 42 H 1.08005 * 120.09777 * 180.25499 * 14 13 12 43 43 H 0.97002 * 119.99752 * 179.97438 * 19 18 16 44 44 H 1.08004 * 120.09039 * 179.97438 * 24 15 14 45 45 H 1.07996 * 119.90807 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5529 2.1084 -1.1902 5 6 2.3058 1.6025 -2.4224 6 6 1.6228 2.0836 1.2299 7 6 2.5277 1.6420 2.3818 8 1 3.5711 1.7689 2.0935 9 8 2.2802 0.2669 2.6816 10 6 2.2328 2.4945 3.6176 11 8 3.1556 2.1621 4.6568 12 6 3.0306 2.8331 5.8295 13 6 2.0376 3.7997 5.9720 14 6 1.9020 4.4754 7.1494 15 6 2.7762 4.2010 8.2189 16 6 2.6467 4.9000 9.4391 17 1 1.6818 5.2749 9.7468 18 6 3.7683 5.1066 10.2493 19 7 4.9680 4.8888 9.7740 20 14 3.5533 5.6933 12.0097 21 1 2.1073 5.8634 12.3018 22 1 4.1311 4.6902 12.9399 23 1 4.2508 6.9923 12.1871 24 6 3.7808 3.2260 8.0647 25 6 3.8993 2.5553 6.8825 26 1 -0.3633 -1.0274 0.0275 27 1 -0.3634 0.5374 0.8759 28 1 -0.3634 0.4898 -0.9034 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.4843 1.9391 -1.3226 32 1 1.7388 3.1750 -1.0634 33 1 2.0269 0.5673 -2.6189 34 1 2.0479 2.2183 -3.2840 35 1 3.3792 1.6615 -2.2419 36 1 0.5871 1.8408 1.4677 37 1 1.7194 3.1595 1.0838 38 1 1.3692 0.0799 2.9466 39 1 2.3356 3.5496 3.3642 40 1 1.2160 2.3003 3.9589 41 1 1.3705 4.0118 5.1496 42 1 1.1291 5.2216 7.2598 43 1 5.7457 5.0324 10.3357 44 1 4.4555 3.0100 8.8800 45 1 4.6693 1.8077 6.7624 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060943193.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:16 Heat of formation + Delta-G solvation = -86.606966 kcal Electronic energy + Delta-G solvation = -23199.526023 eV Core-core repulsion = 19795.303024 eV Total energy + Delta-G solvation = -3404.222999 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74723 -39.83612 -38.27195 -37.10383 -35.14946 -32.55820 -32.18669 -31.60356 -30.91525 -29.54612 -26.91460 -25.93436 -24.81278 -23.28548 -22.49310 -22.11859 -20.84919 -19.24314 -18.67233 -17.69673 -17.57417 -17.02647 -16.68497 -16.60826 -15.92506 -15.71525 -15.43683 -15.15086 -14.75060 -14.61977 -14.11835 -14.04873 -13.92572 -13.73834 -13.53819 -13.08580 -12.99529 -12.82355 -12.80481 -12.70786 -12.56161 -12.38330 -12.28650 -11.98126 -11.93017 -11.66671 -11.57601 -11.50159 -11.17921 -10.91898 -10.67791 -9.56567 -9.15790 -8.87199 -8.55917 -6.24412 0.94570 1.02161 1.40335 1.50813 1.55231 2.24027 2.37903 2.75459 3.11498 3.46467 3.68944 3.94574 3.97979 4.06291 4.11136 4.21162 4.28782 4.33849 4.36366 4.43986 4.44377 4.47718 4.58148 4.66523 4.71186 4.86138 4.87524 5.02361 5.07236 5.11016 5.15980 5.21396 5.22255 5.29633 5.30469 5.51596 5.58148 5.65098 5.87590 6.06764 6.14475 6.22745 6.26692 6.57227 6.78514 6.83531 6.96640 7.10020 8.41601 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.044092 B = 0.002456 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.876242 B =11398.875531 C =11447.125819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.034 3.966 3 N -0.543 5.543 4 C 0.041 3.959 5 C -0.143 4.143 6 C 0.030 3.970 7 C 0.129 3.871 8 H 0.093 0.907 9 O -0.559 6.559 10 C 0.031 3.969 11 O -0.331 6.331 12 C 0.007 3.993 13 C -0.167 4.167 14 C -0.202 4.202 15 C 0.053 3.947 16 C -0.499 4.499 17 H 0.076 0.924 18 C 0.029 3.971 19 N -0.840 5.840 20 Si 0.984 3.016 21 H -0.258 1.258 22 H -0.266 1.266 23 H -0.268 1.268 24 C -0.145 4.145 25 C -0.138 4.138 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.381 0.619 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.130 0.870 42 H 0.107 0.893 43 H 0.286 0.714 44 H 0.108 0.892 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.401 -5.617 -18.489 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.093 4.093 3 N -0.267 5.267 4 C -0.087 4.087 5 C -0.201 4.201 6 C -0.098 4.098 7 C 0.069 3.931 8 H 0.111 0.889 9 O -0.366 6.366 10 C -0.046 4.046 11 O -0.247 6.247 12 C -0.037 4.037 13 C -0.186 4.186 14 C -0.222 4.222 15 C 0.051 3.949 16 C -0.530 4.530 17 H 0.094 0.906 18 C -0.183 4.183 19 N -0.468 5.468 20 Si 0.805 3.195 21 H -0.181 1.181 22 H -0.191 1.191 23 H -0.193 1.193 24 C -0.165 4.165 25 C -0.157 4.157 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.148 0.852 42 H 0.125 0.875 43 H 0.096 0.904 44 H 0.126 0.874 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.879 -5.806 -18.672 20.729 hybrid contribution -1.300 0.622 1.014 1.762 sum -8.178 -5.184 -17.658 20.139 Atomic orbital electron populations 1.22370 0.97604 1.02820 1.01792 1.22470 0.93342 0.89624 1.03859 1.62094 1.60169 1.02938 1.01490 1.22263 0.97995 0.98182 0.90225 1.21726 1.00598 1.01167 0.96568 1.22664 0.97519 0.99643 0.90022 1.21787 1.00866 0.80592 0.89851 0.88871 1.86603 1.35283 1.25231 1.89472 1.23501 0.93080 1.00193 0.87779 1.85893 1.56158 1.61661 1.20954 1.18718 0.99712 0.98491 0.86779 1.20705 0.99931 0.99112 0.98851 1.20864 1.04157 1.03633 0.93548 1.17965 0.92137 0.91379 0.93428 1.19715 0.95899 1.33376 1.03995 0.90606 1.26736 0.93987 0.93508 1.04088 1.69882 0.99629 1.38853 1.38393 0.85128 0.79638 0.78391 0.76319 1.18128 1.19118 1.19274 1.20896 1.01692 0.97260 0.96638 1.20018 1.00116 1.02532 0.92985 0.91369 0.92488 0.92395 0.91102 0.89006 0.93511 0.90831 0.92897 0.91175 0.92921 0.92007 0.89122 0.77032 0.91460 0.91523 0.85190 0.87453 0.90402 0.87405 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 9.31 71.98 0.67 -1.76 16 2 C 0.03 0.57 5.72 86.30 0.49 1.06 16 3 N -0.54 -9.65 4.58 -896.22 -4.11 -13.76 16 4 C 0.04 0.59 5.53 86.31 0.48 1.06 16 5 C -0.14 -1.91 9.83 71.98 0.71 -1.20 16 6 C 0.03 0.52 4.68 86.30 0.40 0.92 16 7 C 0.13 3.04 3.46 30.59 0.11 3.15 16 8 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 9 O -0.56 -13.61 10.52 -144.34 -1.52 -15.12 16 10 C 0.03 0.86 4.36 71.98 0.31 1.18 16 11 O -0.33 -13.19 10.09 -85.38 -0.86 -14.05 16 12 C 0.01 0.32 6.71 22.79 0.15 0.47 16 13 C -0.17 -7.28 8.96 22.11 0.20 -7.08 16 14 C -0.20 -9.90 9.74 22.48 0.22 -9.68 16 15 C 0.05 2.91 5.54 -21.28 -0.12 2.79 16 16 C -0.50 -27.28 9.04 23.40 0.21 -27.07 16 17 H 0.08 3.97 7.88 -2.91 -0.02 3.95 16 18 C 0.03 1.51 5.20 85.24 0.44 1.96 16 19 N -0.84 -45.21 10.95 21.82 0.24 -44.97 16 20 Si 0.98 39.01 29.58 68.60 2.03 41.04 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 24 C -0.15 -7.92 8.61 22.48 0.19 -7.73 16 25 C -0.14 -6.88 9.92 22.11 0.22 -6.66 16 26 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.06 0.73 6.12 -2.39 -0.01 0.72 16 28 H 0.06 0.72 6.24 -2.39 -0.01 0.70 16 29 H 0.07 1.15 6.85 -2.39 -0.02 1.13 16 30 H 0.09 1.77 5.39 -2.39 -0.01 1.76 16 31 H 0.05 0.61 5.78 -2.39 -0.01 0.60 16 32 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 33 H 0.05 0.69 7.06 -2.39 -0.02 0.67 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.92 5.76 -2.39 -0.01 0.90 16 37 H 0.09 1.44 7.61 -2.39 -0.02 1.43 16 38 H 0.38 6.68 9.05 -74.06 -0.67 6.01 16 39 H 0.07 1.79 7.63 -2.39 -0.02 1.77 16 40 H 0.07 1.68 7.66 -2.38 -0.02 1.66 16 41 H 0.13 4.58 6.27 -2.91 -0.02 4.56 16 42 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 43 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 44 H 0.11 6.13 6.29 -2.91 -0.02 6.11 16 45 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -63.64 353.90 0.79 -62.85 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.32 Total: 32.60 kcal Atomic # 6 Polarization: -53.28 SS G_CDS: 4.69 Total: -48.59 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -3.87 Total: -58.73 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -2.38 Total: -29.18 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -63.64 0.79 -62.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060943193.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.758 kcal (2) G-P(sol) polarization free energy of solvation -63.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds