Wall clock time and date at job start Tue Mar 31 2020 07:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53123 * 109.57495 * 2 1 4 4 C 1.53034 * 109.27992 * 177.60435 * 3 2 1 5 5 N 1.46847 * 109.51345 * 300.80438 * 4 3 2 6 6 C 1.46895 * 110.99982 * 185.84805 * 5 4 3 7 7 C 1.50700 * 109.47354 * 169.99549 * 6 5 4 8 8 O 1.21282 * 120.00036 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00099 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99960 * 180.02562 * 9 7 6 11 11 C 1.50693 * 109.47047 * 90.00262 * 10 9 7 12 12 H 1.07996 * 120.00394 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99976 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99471 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00081 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46658 * 89.99890 * 15 13 11 17 17 H 1.48497 * 109.47031 * 209.99698 * 15 13 11 18 18 H 1.48500 * 109.47190 * 330.00361 * 15 13 11 19 19 C 1.46492 * 119.99961 * 0.02562 * 9 7 6 20 20 C 1.53005 * 109.47534 * 89.99877 * 19 9 7 21 21 C 1.47196 * 109.47543 * 179.97438 * 20 19 9 22 22 N 9.29486 * 159.44505 * 14.65587 * 2 1 3 23 23 C 1.46843 * 111.20124 * 61.74903 * 5 4 3 24 24 C 1.53042 * 109.52278 * 298.25596 * 23 5 4 25 25 H 1.09000 * 109.46968 * 300.29446 * 1 2 3 26 26 H 1.09000 * 109.47430 * 60.29800 * 1 2 3 27 27 H 1.09002 * 109.46935 * 180.29882 * 1 2 3 28 28 H 1.09003 * 109.52281 * 239.83230 * 2 1 3 29 29 H 1.08997 * 109.51083 * 57.65029 * 3 2 1 30 30 H 1.08998 * 109.48980 * 297.53960 * 3 2 1 31 31 H 1.09002 * 109.46271 * 180.79158 * 4 3 2 32 32 H 1.08994 * 109.46242 * 60.81457 * 4 3 2 33 33 H 1.09000 * 109.47118 * 289.99436 * 6 5 4 34 34 H 1.09003 * 109.47534 * 49.99526 * 6 5 4 35 35 H 1.08997 * 109.46727 * 210.00522 * 10 9 7 36 36 H 1.09002 * 109.46704 * 330.00168 * 10 9 7 37 37 H 0.97009 * 119.99675 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47272 * 209.99067 * 19 9 7 39 39 H 1.08998 * 109.47591 * 329.99802 * 19 9 7 40 40 H 1.09003 * 109.46691 * 299.99772 * 20 19 9 41 41 H 1.09001 * 109.47237 * 59.99524 * 20 19 9 42 42 H 1.08993 * 109.46313 * 58.27251 * 23 5 4 43 43 H 1.09000 * 109.46480 * 178.25361 * 23 5 4 44 44 H 1.08997 * 109.50758 * 179.11703 * 24 23 5 45 45 H 1.08998 * 109.50897 * 299.20258 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4427 0.0000 4 6 3.5721 1.4353 0.0604 5 7 4.0116 0.7408 1.2773 6 6 5.4685 0.8344 1.4399 7 6 5.8548 0.3320 2.8071 8 8 5.0005 -0.0655 3.5708 9 7 7.1497 0.3233 3.1809 10 6 7.5252 -0.1657 4.5099 11 6 7.7964 -1.6465 4.4421 12 1 7.6991 -2.1709 3.5031 13 6 8.1686 -2.3319 5.5791 14 7 8.2865 -1.6934 6.7228 15 14 8.5040 -4.1676 5.4953 16 1 9.9391 -4.3950 5.1885 17 1 8.1722 -4.7916 6.8014 18 1 7.6676 -4.7755 4.4294 19 6 8.1816 0.8029 2.2583 20 6 8.3964 2.3031 2.4684 21 6 9.4337 2.7849 1.5417 22 7 10.2331 3.1573 0.8257 23 6 3.5710 -0.6600 1.2779 24 6 2.0417 -0.7151 1.2536 25 1 -0.3633 0.5184 0.8873 26 1 -0.3634 0.5092 -0.8926 27 1 -0.3633 -1.0277 0.0054 28 1 1.8942 -0.5163 -0.8882 29 1 1.6470 1.9699 0.8679 30 1 1.7172 1.9445 -0.9111 31 1 3.9400 2.4612 0.0747 32 1 3.9676 0.9199 -0.8148 33 1 5.9588 0.2282 0.6781 34 1 5.7800 1.8735 1.3333 35 1 8.4224 0.3530 4.8476 36 1 6.7112 0.0231 5.2098 37 1 8.5488 -2.1755 7.5226 38 1 9.1144 0.2722 2.4488 39 1 7.8637 0.6217 1.2315 40 1 7.4636 2.8339 2.2778 41 1 8.7143 2.4844 3.4951 42 1 3.9666 -1.1655 0.3970 43 1 3.9378 -1.1558 2.1766 44 1 1.7152 -1.7549 1.2381 45 1 1.6456 -0.2224 2.1415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070943479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:50 Heat of formation + Delta-G solvation = -15.622972 kcal Electronic energy + Delta-G solvation = -24016.622840 eV Core-core repulsion = 20647.770689 eV Total energy + Delta-G solvation = -3368.852151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.77349 -38.41825 -36.83352 -35.25687 -34.40878 -32.86514 -30.85972 -30.72033 -29.44353 -27.42744 -25.49051 -23.98675 -23.11508 -22.69015 -21.57058 -19.63704 -18.48604 -17.59497 -16.64552 -16.44224 -15.88457 -15.36494 -15.07749 -14.71666 -14.52579 -14.33831 -14.21151 -14.03183 -13.79097 -13.43659 -13.02050 -12.73380 -12.47747 -12.41237 -12.36699 -12.17353 -12.02580 -11.82181 -11.67396 -11.38143 -11.25968 -11.13378 -10.97712 -10.85028 -10.68231 -10.61670 -10.29904 -10.26102 -10.10609 -9.69415 -8.92426 -8.47201 -8.11542 -7.80730 -6.08626 -4.13193 2.72953 2.81045 3.27818 3.32724 3.35704 3.40104 3.53629 3.98034 4.31045 4.42365 4.72159 4.78441 4.80900 4.96793 5.06842 5.12951 5.25756 5.27141 5.31131 5.37457 5.42030 5.47276 5.51982 5.59106 5.62841 5.65547 5.72568 5.83302 5.83641 6.00205 6.03091 6.07034 6.09137 6.20775 6.38413 6.47964 6.90061 7.14464 7.24520 7.39211 7.45871 7.57342 7.87744 8.18153 8.29821 8.86032 9.03935 9.52409 10.99417 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010895 B = 0.004846 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.342339 B = 5776.157062 C = 7863.230122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.109 4.109 4 C 0.056 3.944 5 N -0.518 5.518 6 C 0.033 3.967 7 C 0.508 3.492 8 O -0.513 6.513 9 N -0.600 5.600 10 C 0.246 3.754 11 C -0.528 4.528 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.896 3.104 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.118 3.882 20 C -0.051 4.051 21 C 0.217 3.783 22 N -0.447 5.447 23 C 0.049 3.951 24 C -0.108 4.108 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.034 0.966 36 H 0.047 0.953 37 H 0.263 0.737 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.023 0.977 43 H 0.101 0.899 44 H 0.063 0.937 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.381 6.627 -13.119 17.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.147 4.147 4 C -0.072 4.072 5 N -0.243 5.243 6 C -0.098 4.098 7 C 0.294 3.706 8 O -0.388 6.388 9 N -0.332 5.332 10 C 0.127 3.873 11 C -0.567 4.567 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.008 4.008 20 C -0.092 4.092 21 C -0.101 4.101 22 N -0.124 5.124 23 C -0.078 4.078 24 C -0.145 4.145 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.136 0.864 42 H 0.041 0.959 43 H 0.120 0.880 44 H 0.081 0.919 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.835 7.157 -13.148 17.383 hybrid contribution 0.483 -1.537 -0.431 1.667 sum -8.352 5.620 -13.579 16.904 Atomic orbital electron populations 1.21803 0.95334 1.01537 1.01553 1.21215 0.95434 0.96269 0.98509 1.21618 0.94551 0.96606 1.01923 1.22101 0.96039 0.98694 0.90404 1.61568 1.10428 1.15515 1.36824 1.22094 0.89356 1.02119 0.96211 1.20184 0.82702 0.79304 0.88384 1.90659 1.48589 1.45939 1.53635 1.48229 1.04609 1.62269 1.18143 1.19323 0.96580 0.94115 0.77245 1.21411 1.46508 0.93599 0.95185 0.92487 1.24908 0.95356 0.98475 0.95185 1.69920 1.47533 1.36232 0.99501 0.86536 0.78368 0.85212 0.77536 1.20680 1.21097 1.19937 1.21284 0.94805 0.90647 0.94106 1.19920 0.93772 0.98345 0.97207 1.29131 0.94033 0.93182 0.93711 1.81205 1.10953 1.09351 1.10905 1.22290 0.95604 0.88012 1.01889 1.21602 0.94977 0.99989 0.97970 0.92540 0.93064 0.92852 0.91883 0.90924 0.91893 0.90890 0.95266 0.92564 0.88616 0.94826 0.93516 0.92683 0.88817 0.90881 0.87545 0.86442 0.95916 0.88040 0.91856 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.20 37.16 0.34 -0.92 16 2 C -0.10 -0.97 2.79 -90.49 -0.25 -1.22 16 3 C -0.11 -1.07 5.38 -26.65 -0.14 -1.21 16 4 C 0.06 0.59 5.46 -3.84 -0.02 0.57 16 5 N -0.52 -7.18 4.40 -236.12 -1.04 -8.22 16 6 C 0.03 0.45 4.00 -4.98 -0.02 0.43 16 7 C 0.51 9.30 7.35 -10.98 -0.08 9.22 16 8 O -0.51 -11.74 13.90 5.56 0.08 -11.66 16 9 N -0.60 -10.83 2.46 -175.06 -0.43 -11.26 16 10 C 0.25 5.78 5.16 -5.19 -0.03 5.75 16 11 C -0.53 -13.99 9.39 -34.44 -0.32 -14.31 16 12 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 15 Si 0.90 21.14 29.54 -169.99 -5.02 16.11 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.12 1.55 5.17 -4.04 -0.02 1.53 16 20 C -0.05 -0.53 6.03 -29.52 -0.18 -0.70 16 21 C 0.22 2.60 15.43 -20.76 -0.32 2.28 16 22 N -0.45 -6.52 18.54 42.15 0.78 -5.74 16 23 C 0.05 0.72 5.11 -3.83 -0.02 0.70 16 24 C -0.11 -1.33 5.38 -26.64 -0.14 -1.48 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.69 8.02 -51.93 -0.42 0.27 16 32 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.70 7.38 -51.93 -0.38 0.31 16 34 H 0.10 1.02 7.03 -51.93 -0.37 0.66 16 35 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 36 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 39 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 40 H 0.11 0.89 7.22 -51.93 -0.38 0.52 16 41 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.10 1.85 5.78 -51.93 -0.30 1.55 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -31.86 365.86 -8.28 -40.14 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -7.59 Total: -2.48 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.30 Total: 2.27 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.05 Total: -49.89 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.86 -8.28 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070943479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.517 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds