Wall clock time and date at job start Tue Mar 31 2020 07:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53123 * 109.57495 * 2 1 4 4 C 1.53034 * 109.27992 * 177.60435 * 3 2 1 5 5 N 1.46847 * 109.51345 * 300.80438 * 4 3 2 6 6 C 1.46895 * 110.99982 * 185.84805 * 5 4 3 7 7 C 1.50700 * 109.47354 * 169.99549 * 6 5 4 8 8 O 1.21282 * 120.00036 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00099 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99960 * 180.02562 * 9 7 6 11 11 C 1.50693 * 109.47047 * 90.00262 * 10 9 7 12 12 H 1.07996 * 120.00394 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99976 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99471 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00081 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46658 * 89.99890 * 15 13 11 17 17 H 1.48497 * 109.47031 * 209.99698 * 15 13 11 18 18 H 1.48500 * 109.47190 * 330.00361 * 15 13 11 19 19 C 1.46492 * 119.99961 * 0.02562 * 9 7 6 20 20 C 1.53005 * 109.47534 * 89.99877 * 19 9 7 21 21 C 1.47196 * 109.47543 * 179.97438 * 20 19 9 22 22 N 9.29486 * 159.44505 * 14.65587 * 2 1 3 23 23 C 1.46843 * 111.20124 * 61.74903 * 5 4 3 24 24 C 1.53042 * 109.52278 * 298.25596 * 23 5 4 25 25 H 1.09000 * 109.46968 * 300.29446 * 1 2 3 26 26 H 1.09000 * 109.47430 * 60.29800 * 1 2 3 27 27 H 1.09002 * 109.46935 * 180.29882 * 1 2 3 28 28 H 1.09003 * 109.52281 * 239.83230 * 2 1 3 29 29 H 1.08997 * 109.51083 * 57.65029 * 3 2 1 30 30 H 1.08998 * 109.48980 * 297.53960 * 3 2 1 31 31 H 1.09002 * 109.46271 * 180.79158 * 4 3 2 32 32 H 1.08994 * 109.46242 * 60.81457 * 4 3 2 33 33 H 1.09000 * 109.47118 * 289.99436 * 6 5 4 34 34 H 1.09003 * 109.47534 * 49.99526 * 6 5 4 35 35 H 1.08997 * 109.46727 * 210.00522 * 10 9 7 36 36 H 1.09002 * 109.46704 * 330.00168 * 10 9 7 37 37 H 0.97009 * 119.99675 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47272 * 209.99067 * 19 9 7 39 39 H 1.08998 * 109.47591 * 329.99802 * 19 9 7 40 40 H 1.09003 * 109.46691 * 299.99772 * 20 19 9 41 41 H 1.09001 * 109.47237 * 59.99524 * 20 19 9 42 42 H 1.08993 * 109.46313 * 58.27251 * 23 5 4 43 43 H 1.09000 * 109.46480 * 178.25361 * 23 5 4 44 44 H 1.08997 * 109.50758 * 179.11703 * 24 23 5 45 45 H 1.08998 * 109.50897 * 299.20258 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4427 0.0000 4 6 3.5721 1.4353 0.0604 5 7 4.0116 0.7408 1.2773 6 6 5.4685 0.8344 1.4399 7 6 5.8548 0.3320 2.8071 8 8 5.0005 -0.0655 3.5708 9 7 7.1497 0.3233 3.1809 10 6 7.5252 -0.1657 4.5099 11 6 7.7964 -1.6465 4.4421 12 1 7.6991 -2.1709 3.5031 13 6 8.1686 -2.3319 5.5791 14 7 8.2865 -1.6934 6.7228 15 14 8.5040 -4.1676 5.4953 16 1 9.9391 -4.3950 5.1885 17 1 8.1722 -4.7916 6.8014 18 1 7.6676 -4.7755 4.4294 19 6 8.1816 0.8029 2.2583 20 6 8.3964 2.3031 2.4684 21 6 9.4337 2.7849 1.5417 22 7 10.2331 3.1573 0.8257 23 6 3.5710 -0.6600 1.2779 24 6 2.0417 -0.7151 1.2536 25 1 -0.3633 0.5184 0.8873 26 1 -0.3634 0.5092 -0.8926 27 1 -0.3633 -1.0277 0.0054 28 1 1.8942 -0.5163 -0.8882 29 1 1.6470 1.9699 0.8679 30 1 1.7172 1.9445 -0.9111 31 1 3.9400 2.4612 0.0747 32 1 3.9676 0.9199 -0.8148 33 1 5.9588 0.2282 0.6781 34 1 5.7800 1.8735 1.3333 35 1 8.4224 0.3530 4.8476 36 1 6.7112 0.0231 5.2098 37 1 8.5488 -2.1755 7.5226 38 1 9.1144 0.2722 2.4488 39 1 7.8637 0.6217 1.2315 40 1 7.4636 2.8339 2.2778 41 1 8.7143 2.4844 3.4951 42 1 3.9666 -1.1655 0.3970 43 1 3.9378 -1.1558 2.1766 44 1 1.7152 -1.7549 1.2381 45 1 1.6456 -0.2224 2.1415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070943479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:49 Heat of formation + Delta-G solvation = -35.524605 kcal Electronic energy + Delta-G solvation = -24017.485840 eV Core-core repulsion = 20647.770689 eV Total energy + Delta-G solvation = -3369.715151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03436 -39.52305 -37.94010 -36.64225 -35.42875 -34.78973 -32.13741 -31.67179 -30.58977 -28.95398 -26.72756 -25.28455 -24.27725 -24.02460 -22.58239 -20.52002 -19.87375 -18.78487 -18.31274 -17.90217 -17.17892 -16.58407 -16.38354 -16.03759 -15.61205 -15.45877 -15.30398 -15.12360 -14.87571 -14.51610 -14.34341 -14.02945 -13.73195 -13.55292 -13.50037 -13.27490 -13.21404 -13.01423 -12.79400 -12.70025 -12.62529 -12.49159 -12.37847 -12.16729 -12.04640 -11.81275 -11.65608 -11.53983 -11.18175 -11.09304 -10.57412 -10.35874 -9.41427 -9.14424 -8.16755 -6.28990 1.39130 1.41583 1.50694 1.71105 1.85761 1.96413 2.26240 2.44468 2.99469 3.14278 3.22612 3.81114 3.92296 3.94718 3.97570 4.08482 4.14458 4.29807 4.38202 4.42490 4.51814 4.59202 4.64847 4.69966 4.81002 4.86183 4.86436 4.90991 5.03771 5.07953 5.10770 5.13450 5.21603 5.32242 5.32334 5.36628 5.40309 5.60341 5.64126 5.91009 6.08751 6.15443 6.28342 6.62262 6.79191 6.86726 7.37024 7.61495 8.89741 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010895 B = 0.004846 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.342339 B = 5776.157062 C = 7863.230122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.108 4.108 4 C 0.055 3.945 5 N -0.538 5.538 6 C 0.044 3.956 7 C 0.501 3.499 8 O -0.570 6.570 9 N -0.601 5.601 10 C 0.262 3.738 11 C -0.539 4.539 12 H 0.052 0.948 13 C 0.012 3.988 14 N -0.926 5.926 15 Si 0.956 3.044 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.275 1.275 19 C 0.114 3.886 20 C -0.038 4.038 21 C 0.247 3.753 22 N -0.490 5.490 23 C 0.053 3.947 24 C -0.105 4.105 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.033 0.967 36 H 0.002 0.998 37 H 0.265 0.735 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.137 0.863 41 H 0.119 0.881 42 H 0.031 0.969 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.588 7.401 -15.844 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.145 4.145 4 C -0.072 4.072 5 N -0.264 5.264 6 C -0.087 4.087 7 C 0.289 3.711 8 O -0.448 6.448 9 N -0.332 5.332 10 C 0.141 3.859 11 C -0.577 4.577 12 H 0.070 0.930 13 C -0.187 4.187 14 N -0.566 5.566 15 Si 0.782 3.218 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.010 4.010 20 C -0.079 4.079 21 C -0.071 4.071 22 N -0.168 5.168 23 C -0.075 4.075 24 C -0.143 4.143 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.152 0.848 35 H 0.051 0.949 36 H 0.020 0.980 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.155 0.845 41 H 0.137 0.863 42 H 0.049 0.951 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.017 7.957 -15.922 19.953 hybrid contribution 0.517 -1.776 0.441 1.902 sum -8.500 6.180 -15.481 18.711 Atomic orbital electron populations 1.21775 0.94243 1.01837 1.02078 1.21188 0.96330 0.96384 0.97067 1.21637 0.94083 0.96209 1.02612 1.22227 0.96531 0.99326 0.89131 1.61525 1.10662 1.15012 1.39155 1.22089 0.89623 1.04259 0.92686 1.21158 0.81869 0.78132 0.89898 1.90643 1.50160 1.48316 1.55715 1.48104 1.06009 1.62132 1.16989 1.18752 0.94616 0.92971 0.79578 1.21744 1.45823 0.95245 0.94924 0.93019 1.25708 0.95367 1.02691 0.94965 1.70028 1.48610 1.37842 1.00088 0.85582 0.78753 0.80169 0.77305 1.19213 1.21016 1.19975 1.21496 0.92981 0.92185 0.94373 1.19837 0.94682 0.96417 0.96925 1.29144 0.93199 0.91986 0.92733 1.81251 1.12302 1.10801 1.12430 1.22116 0.96799 0.88664 0.99883 1.21569 0.93716 1.00348 0.98672 0.93127 0.91399 0.92730 0.91132 0.92131 0.89372 0.88939 0.94098 0.90615 0.84817 0.94913 0.97968 0.92613 0.89966 0.87791 0.84482 0.86282 0.95127 0.92599 0.91722 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.20 71.98 0.66 -1.53 16 2 C -0.09 -1.66 2.79 -10.71 -0.03 -1.69 16 3 C -0.11 -1.80 5.38 30.65 0.16 -1.64 16 4 C 0.05 0.98 5.46 86.32 0.47 1.45 16 5 N -0.54 -14.00 4.40 -900.96 -3.96 -17.96 16 6 C 0.04 1.07 4.00 85.56 0.34 1.41 16 7 C 0.50 18.27 7.35 87.66 0.64 18.92 16 8 O -0.57 -27.27 13.90 -3.03 -0.04 -27.31 16 9 N -0.60 -21.54 2.46 -826.16 -2.03 -23.57 16 10 C 0.26 12.72 5.16 85.63 0.44 13.16 16 11 C -0.54 -29.20 9.39 25.60 0.24 -28.96 16 12 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 13 C 0.01 0.65 5.46 84.66 0.46 1.12 16 14 N -0.93 -53.98 13.29 21.45 0.28 -53.70 16 15 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 19 C 0.11 2.76 5.17 86.38 0.45 3.21 16 20 C -0.04 -0.67 6.03 28.79 0.17 -0.49 16 21 C 0.25 5.24 15.43 89.44 1.38 6.62 16 22 N -0.49 -13.35 18.54 20.00 0.37 -12.98 16 23 C 0.05 1.55 5.11 86.33 0.44 1.99 16 24 C -0.11 -2.61 5.38 30.65 0.16 -2.45 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.32 8.02 -2.39 -0.02 1.30 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 1.59 7.38 -2.39 -0.02 1.57 16 34 H 0.13 2.21 7.03 -2.39 -0.02 2.20 16 35 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 36 H 0.00 0.13 7.42 -2.39 -0.02 0.11 16 37 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 38 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 39 H 0.10 1.90 6.44 -2.39 -0.02 1.89 16 40 H 0.14 1.69 7.22 -2.39 -0.02 1.68 16 41 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 2.15 5.78 -2.39 -0.01 2.13 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -73.33 365.86 3.61 -69.71 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.96 Total: 8.83 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 6.01 Total: 11.12 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -5.33 Total: -108.21 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.04 Total: -27.31 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -73.33 3.61 -69.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070943479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.189 kcal (2) G-P(sol) polarization free energy of solvation -73.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds