Wall clock time and date at job start Tue Mar 31 2020 06:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46901 * 109.47157 * 2 1 4 4 C 1.46891 * 110.99913 * 297.33166 * 3 2 1 5 5 C 1.50709 * 109.47161 * 292.72305 * 4 3 2 6 6 H 1.07993 * 120.00014 * 355.02396 * 5 4 3 7 7 C 1.37881 * 120.00020 * 175.02606 * 5 4 3 8 8 N 1.31514 * 119.99732 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99868 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47096 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47074 * 119.99992 * 9 7 5 12 12 H 1.48501 * 109.46640 * 239.99938 * 9 7 5 13 13 C 1.46901 * 110.99678 * 61.28512 * 3 2 1 14 14 C 1.53000 * 109.47034 * 66.04898 * 13 3 2 15 15 H 1.08998 * 109.46738 * 304.99316 * 14 13 3 16 16 O 1.42890 * 109.47539 * 64.99651 * 14 13 3 17 17 C 1.53000 * 109.46721 * 184.99756 * 14 13 3 18 18 O 1.42904 * 109.46870 * 174.99779 * 17 14 13 19 19 C 1.42902 * 113.99751 * 180.02562 * 18 17 14 20 20 C 1.50704 * 109.47035 * 180.02562 * 19 18 17 21 21 C 1.38232 * 120.00251 * 89.99637 * 20 19 18 22 22 C 1.38233 * 119.99900 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00386 * 0.06376 * 22 21 20 24 24 C 1.38233 * 119.99682 * 359.91652 * 23 22 21 25 25 C 1.38235 * 119.99732 * 269.97552 * 20 19 18 26 26 H 1.09000 * 109.47023 * 59.43441 * 1 2 3 27 27 H 1.09003 * 109.47256 * 179.43879 * 1 2 3 28 28 H 1.08994 * 109.46676 * 299.43798 * 1 2 3 29 29 H 1.09003 * 109.47054 * 239.99537 * 2 1 3 30 30 H 1.08997 * 109.47112 * 120.00167 * 2 1 3 31 31 H 1.08995 * 109.47405 * 52.72068 * 4 3 2 32 32 H 1.09005 * 109.46952 * 172.72526 * 4 3 2 33 33 H 0.97002 * 119.99407 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.47424 * 306.04250 * 13 3 2 35 35 H 1.09007 * 109.46694 * 186.04322 * 13 3 2 36 36 H 0.96701 * 114.00264 * 59.99962 * 16 14 13 37 37 H 1.08997 * 109.47363 * 54.99950 * 17 14 13 38 38 H 1.08998 * 109.47356 * 294.99827 * 17 14 13 39 39 H 1.08995 * 109.47374 * 59.99834 * 19 18 17 40 40 H 1.09003 * 109.47149 * 299.99503 * 19 18 17 41 41 H 1.08002 * 119.99586 * 359.70089 * 21 20 19 42 42 H 1.08006 * 119.99807 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.00192 * 179.97438 * 23 22 21 44 44 H 1.08003 * 120.00370 * 180.02562 * 24 23 22 45 45 H 1.08006 * 120.00109 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6016 2.0912 -1.2183 5 6 2.3003 1.4916 -2.4114 6 1 3.0459 0.7231 -2.2706 7 6 1.9877 1.9242 -3.6827 8 7 1.0802 2.8605 -3.8540 9 14 2.8533 1.1805 -5.1616 10 1 3.8241 0.1548 -4.7028 11 1 1.8504 0.5485 -6.0560 12 1 3.5739 2.2475 -5.9015 13 6 1.5740 2.1009 1.2028 14 6 2.2320 1.4822 2.4378 15 1 2.0206 0.4133 2.4649 16 8 3.6448 1.6870 2.3778 17 6 1.6737 2.1447 3.6988 18 8 2.2001 1.4889 4.8543 19 6 1.7385 2.0332 6.0923 20 6 2.3541 1.2704 7.2370 21 6 3.5606 1.6813 7.7721 22 6 4.1249 0.9818 8.8224 23 6 3.4834 -0.1294 9.3368 24 6 2.2766 -0.5400 8.8020 25 6 1.7119 0.1599 7.7522 26 1 -0.3633 0.5226 -0.8849 27 1 -0.3634 -1.0276 -0.0101 28 1 -0.3632 0.5051 0.8950 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.5230 1.9943 -1.3424 32 1 1.8645 3.1458 -1.1353 33 1 0.8600 3.1646 -4.7485 34 1 0.4904 2.0234 1.2911 35 1 1.8582 3.1505 1.1271 36 1 3.9066 2.6175 2.3510 37 1 0.5866 2.0656 3.7000 38 1 1.9615 3.1959 3.7149 39 1 0.6528 1.9515 6.1428 40 1 2.0274 3.0822 6.1583 41 1 4.0645 2.5462 7.3666 42 1 5.0678 1.3026 9.2402 43 1 3.9245 -0.6761 10.1571 44 1 1.7751 -1.4079 9.2041 45 1 0.7693 -0.1612 7.3341 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070989019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:19 Heat of formation + Delta-G solvation = -67.585235 kcal Electronic energy + Delta-G solvation = -23033.217695 eV Core-core repulsion = 19629.819540 eV Total energy + Delta-G solvation = -3403.398155 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.61538 -38.59779 -37.26922 -35.63874 -32.59814 -32.25692 -31.13849 -30.32740 -29.26357 -27.14484 -25.94353 -24.21706 -23.29667 -22.82180 -21.67823 -21.25583 -19.31355 -17.18072 -16.81866 -16.52116 -16.15098 -16.00319 -15.58550 -15.29520 -14.88659 -14.80419 -14.31991 -14.11847 -13.67753 -13.52976 -13.30550 -12.98637 -12.80117 -12.33935 -12.19824 -12.06506 -11.81114 -11.42532 -11.26457 -11.23813 -11.13169 -11.00285 -10.74178 -10.64318 -10.30386 -10.07266 -9.85644 -9.74227 -9.58092 -9.15210 -9.14799 -9.01866 -8.41869 -7.12632 -6.01268 -4.01560 1.02737 1.17078 3.30311 3.32398 3.39950 3.45993 3.84651 4.43908 4.54883 4.56790 4.72617 4.77035 4.86076 4.98288 5.01519 5.11498 5.12816 5.25751 5.33829 5.35325 5.40805 5.45248 5.51507 5.66585 5.72410 5.79684 5.80096 5.99534 6.02759 6.17347 6.19961 6.25785 6.36062 6.37800 6.46590 6.69948 6.73947 6.92794 7.06558 7.30702 7.43549 7.84146 8.03374 8.13826 8.22516 8.57863 9.07559 9.62652 11.09460 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.035046 B = 0.002445 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.762946 B =11446.972370 C =11547.851968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 N -0.523 5.523 4 C 0.188 3.812 5 C -0.501 4.501 6 H 0.064 0.936 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.023 3.977 14 C 0.116 3.884 15 H 0.103 0.897 16 O -0.539 6.539 17 C 0.029 3.971 18 O -0.369 6.369 19 C 0.100 3.900 20 C -0.087 4.087 21 C -0.097 4.097 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.099 4.099 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.002 0.998 32 H 0.023 0.977 33 H 0.260 0.740 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.367 0.633 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.144 -1.998 24.752 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.070 4.070 3 N -0.247 5.247 4 C 0.063 3.937 5 C -0.540 4.540 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.106 4.106 14 C 0.056 3.944 15 H 0.121 0.879 16 O -0.342 6.342 17 C -0.048 4.048 18 O -0.288 6.288 19 C 0.023 3.977 20 C -0.087 4.087 21 C -0.115 4.115 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.117 4.117 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.020 0.980 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.213 0.787 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.424 -2.710 24.598 24.750 hybrid contribution -0.875 0.618 -0.898 1.398 sum -0.451 -2.092 23.700 23.796 Atomic orbital electron populations 1.22409 0.99625 1.01055 1.01800 1.22017 0.91776 0.91591 1.01634 1.62240 1.58917 1.01689 1.01829 1.19803 0.94757 0.93647 0.85455 1.21201 1.21483 1.21276 0.90033 0.91779 1.24989 0.95367 0.95313 0.99066 1.69969 1.32432 1.29512 1.22177 0.86457 0.79465 0.79113 0.82515 1.19607 1.21191 1.21077 1.22670 0.97332 0.98654 0.91963 1.21923 0.81816 1.00962 0.89672 0.87950 1.86634 1.20854 1.30197 1.96554 1.23375 0.98056 0.96536 0.86834 1.88060 1.70246 1.58084 1.12450 1.21311 0.97349 0.95949 0.83065 1.19632 0.95881 0.96841 0.96374 1.21091 0.94508 1.00008 0.95942 1.21157 1.00031 0.95972 0.97061 1.21195 0.95496 0.96849 0.99958 1.21150 0.96170 0.99961 0.96982 1.21088 1.00123 0.94368 0.96150 0.91296 0.93334 0.93878 0.89947 0.92762 0.97999 0.95904 0.93081 0.94597 0.91160 0.78671 0.92667 0.92992 0.92631 0.92573 0.85874 0.85917 0.86076 0.85947 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.40 9.26 37.16 0.34 -3.06 16 2 C 0.06 1.15 5.68 -3.82 -0.02 1.13 16 3 N -0.52 -11.20 4.64 -236.07 -1.10 -12.30 16 4 C 0.19 4.83 4.54 -4.98 -0.02 4.80 16 5 C -0.50 -14.08 8.39 -34.43 -0.29 -14.37 16 6 H 0.06 1.82 7.39 -52.49 -0.39 1.43 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.02 0.40 4.37 -3.82 -0.02 0.38 16 14 C 0.12 1.78 3.20 -26.73 -0.09 1.69 16 15 H 0.10 1.69 6.31 -51.93 -0.33 1.36 16 16 O -0.54 -9.01 13.25 -40.09 -0.53 -9.54 16 17 C 0.03 0.36 5.57 37.16 0.21 0.57 16 18 O -0.37 -4.97 10.29 -40.09 -0.41 -5.38 16 19 C 0.10 1.03 6.06 36.01 0.22 1.25 16 20 C -0.09 -0.93 5.51 -104.62 -0.58 -1.50 16 21 C -0.10 -0.96 9.70 -39.59 -0.38 -1.35 16 22 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 23 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 25 C -0.10 -0.97 9.70 -39.58 -0.38 -1.36 16 26 H 0.07 1.43 6.29 -51.93 -0.33 1.10 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.70 6.33 -51.93 -0.33 0.37 16 29 H 0.08 1.78 6.98 -51.93 -0.36 1.42 16 30 H 0.05 0.98 6.31 -51.93 -0.33 0.65 16 31 H 0.00 0.06 6.02 -51.93 -0.31 -0.25 16 32 H 0.02 0.63 7.91 -51.93 -0.41 0.21 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.04 0.60 6.05 -51.93 -0.31 0.28 16 35 H 0.07 1.18 7.92 -51.93 -0.41 0.77 16 36 H 0.37 4.89 9.05 45.56 0.41 5.30 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 40 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 45 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -32.35 365.67 -9.57 -41.92 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.45 Total: 3.66 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -2.30 Total: -14.74 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.36 Total: -38.20 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.94 Total: -14.93 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.35 -9.57 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070989019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.670 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds