Wall clock time and date at job start Tue Mar 31 2020 06:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46901 * 109.47157 * 2 1 4 4 C 1.46891 * 110.99913 * 297.33166 * 3 2 1 5 5 C 1.50709 * 109.47161 * 292.72305 * 4 3 2 6 6 H 1.07993 * 120.00014 * 355.02396 * 5 4 3 7 7 C 1.37881 * 120.00020 * 175.02606 * 5 4 3 8 8 N 1.31514 * 119.99732 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99868 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47096 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47074 * 119.99992 * 9 7 5 12 12 H 1.48501 * 109.46640 * 239.99938 * 9 7 5 13 13 C 1.46901 * 110.99678 * 61.28512 * 3 2 1 14 14 C 1.53000 * 109.47034 * 66.04898 * 13 3 2 15 15 H 1.08998 * 109.46738 * 304.99316 * 14 13 3 16 16 O 1.42890 * 109.47539 * 64.99651 * 14 13 3 17 17 C 1.53000 * 109.46721 * 184.99756 * 14 13 3 18 18 O 1.42904 * 109.46870 * 174.99779 * 17 14 13 19 19 C 1.42902 * 113.99751 * 180.02562 * 18 17 14 20 20 C 1.50704 * 109.47035 * 180.02562 * 19 18 17 21 21 C 1.38232 * 120.00251 * 89.99637 * 20 19 18 22 22 C 1.38233 * 119.99900 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00386 * 0.06376 * 22 21 20 24 24 C 1.38233 * 119.99682 * 359.91652 * 23 22 21 25 25 C 1.38235 * 119.99732 * 269.97552 * 20 19 18 26 26 H 1.09000 * 109.47023 * 59.43441 * 1 2 3 27 27 H 1.09003 * 109.47256 * 179.43879 * 1 2 3 28 28 H 1.08994 * 109.46676 * 299.43798 * 1 2 3 29 29 H 1.09003 * 109.47054 * 239.99537 * 2 1 3 30 30 H 1.08997 * 109.47112 * 120.00167 * 2 1 3 31 31 H 1.08995 * 109.47405 * 52.72068 * 4 3 2 32 32 H 1.09005 * 109.46952 * 172.72526 * 4 3 2 33 33 H 0.97002 * 119.99407 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.47424 * 306.04250 * 13 3 2 35 35 H 1.09007 * 109.46694 * 186.04322 * 13 3 2 36 36 H 0.96701 * 114.00264 * 59.99962 * 16 14 13 37 37 H 1.08997 * 109.47363 * 54.99950 * 17 14 13 38 38 H 1.08998 * 109.47356 * 294.99827 * 17 14 13 39 39 H 1.08995 * 109.47374 * 59.99834 * 19 18 17 40 40 H 1.09003 * 109.47149 * 299.99503 * 19 18 17 41 41 H 1.08002 * 119.99586 * 359.70089 * 21 20 19 42 42 H 1.08006 * 119.99807 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.00192 * 179.97438 * 23 22 21 44 44 H 1.08003 * 120.00370 * 180.02562 * 24 23 22 45 45 H 1.08006 * 120.00109 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6016 2.0912 -1.2183 5 6 2.3003 1.4916 -2.4114 6 1 3.0459 0.7231 -2.2706 7 6 1.9877 1.9242 -3.6827 8 7 1.0802 2.8605 -3.8540 9 14 2.8533 1.1805 -5.1616 10 1 3.8241 0.1548 -4.7028 11 1 1.8504 0.5485 -6.0560 12 1 3.5739 2.2475 -5.9015 13 6 1.5740 2.1009 1.2028 14 6 2.2320 1.4822 2.4378 15 1 2.0206 0.4133 2.4649 16 8 3.6448 1.6870 2.3778 17 6 1.6737 2.1447 3.6988 18 8 2.2001 1.4889 4.8543 19 6 1.7385 2.0332 6.0923 20 6 2.3541 1.2704 7.2370 21 6 3.5606 1.6813 7.7721 22 6 4.1249 0.9818 8.8224 23 6 3.4834 -0.1294 9.3368 24 6 2.2766 -0.5400 8.8020 25 6 1.7119 0.1599 7.7522 26 1 -0.3633 0.5226 -0.8849 27 1 -0.3634 -1.0276 -0.0101 28 1 -0.3632 0.5051 0.8950 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.5230 1.9943 -1.3424 32 1 1.8645 3.1458 -1.1353 33 1 0.8600 3.1646 -4.7485 34 1 0.4904 2.0234 1.2911 35 1 1.8582 3.1505 1.1271 36 1 3.9066 2.6175 2.3510 37 1 0.5866 2.0656 3.7000 38 1 1.9615 3.1959 3.7149 39 1 0.6528 1.9515 6.1428 40 1 2.0274 3.0822 6.1583 41 1 4.0645 2.5462 7.3666 42 1 5.0678 1.3026 9.2402 43 1 3.9245 -0.6761 10.1571 44 1 1.7751 -1.4079 9.2041 45 1 0.7693 -0.1612 7.3341 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070989019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:18 Heat of formation + Delta-G solvation = -89.865406 kcal Electronic energy + Delta-G solvation = -23034.183835 eV Core-core repulsion = 19629.819540 eV Total energy + Delta-G solvation = -3404.364296 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37163 -39.81565 -38.46273 -36.98638 -34.70583 -33.02831 -31.78900 -31.60958 -30.93455 -28.72372 -26.97822 -25.55863 -25.08487 -23.47893 -22.87337 -22.18661 -20.90630 -18.40940 -17.91481 -17.78649 -17.60796 -16.92033 -16.82788 -16.48578 -16.25234 -16.13132 -15.66009 -15.31874 -14.81988 -14.59838 -14.37567 -14.25424 -13.95657 -13.63714 -13.51664 -13.16432 -13.07062 -12.98512 -12.78336 -12.62723 -12.56160 -12.51185 -12.01344 -11.90700 -11.87991 -11.71304 -11.38622 -11.31334 -10.80019 -10.61631 -10.59001 -9.82167 -9.75198 -8.84743 -8.18465 -6.26963 0.33892 0.50079 1.39956 1.41166 1.54629 2.39486 2.49373 3.01099 3.13953 3.42155 3.65686 3.83388 3.91464 3.99603 4.12703 4.15025 4.23685 4.29920 4.30579 4.33872 4.37548 4.43453 4.50800 4.54965 4.59867 4.65829 4.72644 4.76982 4.96329 5.00381 5.07940 5.12680 5.15669 5.22724 5.37896 5.50899 5.54863 5.60929 5.67076 5.69321 6.09092 6.10268 6.20346 6.38261 6.68976 6.89697 6.97140 7.42253 8.91852 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.035046 B = 0.002445 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.762946 B =11446.972370 C =11547.851968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.059 3.941 3 N -0.537 5.537 4 C 0.205 3.795 5 C -0.517 4.517 6 H 0.055 0.945 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.964 3.036 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.025 3.975 14 C 0.125 3.875 15 H 0.091 0.909 16 O -0.561 6.561 17 C 0.037 3.963 18 O -0.394 6.394 19 C 0.098 3.902 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.115 4.115 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.075 0.925 31 H -0.017 1.017 32 H -0.001 1.001 33 H 0.263 0.737 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.380 0.620 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.128 0.872 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 -2.706 26.151 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.070 4.070 3 N -0.260 5.260 4 C 0.079 3.921 5 C -0.555 4.555 6 H 0.074 0.926 7 C -0.195 4.195 8 N -0.574 5.574 9 Si 0.789 3.211 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.204 1.204 13 C -0.103 4.103 14 C 0.066 3.934 15 H 0.109 0.891 16 O -0.367 6.367 17 C -0.040 4.040 18 O -0.314 6.314 19 C 0.022 3.978 20 C -0.109 4.109 21 C -0.132 4.132 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.150 4.150 25 C -0.133 4.133 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.000 1.000 32 H 0.017 0.983 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.228 0.772 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.146 0.854 42 H 0.160 0.840 43 H 0.163 0.837 44 H 0.160 0.840 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.605 -3.415 26.021 26.251 hybrid contribution -0.910 0.826 -1.227 1.736 sum -0.305 -2.589 24.794 24.931 Atomic orbital electron populations 1.22279 0.98086 1.02368 1.01043 1.22000 0.93062 0.90528 1.01363 1.62110 1.59666 1.02485 1.01782 1.19430 0.93198 0.92501 0.87015 1.21464 1.21504 1.21184 0.91393 0.92629 1.25830 0.96019 0.95660 1.01997 1.70076 1.33644 1.30642 1.23030 0.85410 0.78450 0.78407 0.78823 1.19157 1.20382 1.20420 1.22720 0.98109 0.98484 0.91006 1.21767 0.81149 1.00358 0.90173 0.89112 1.86585 1.21768 1.31673 1.96663 1.23215 0.98667 0.96806 0.85325 1.88008 1.70926 1.58921 1.13497 1.21450 0.98106 0.96440 0.81757 1.19821 0.96563 0.97601 0.96909 1.21310 0.94667 1.00625 0.96616 1.21472 1.00802 0.95999 0.96743 1.21554 0.95341 0.96733 1.00340 1.21473 0.96447 1.00437 0.96627 1.21317 1.00676 0.94512 0.96768 0.94647 0.90943 0.91922 0.92524 0.90636 0.99975 0.98338 0.92796 0.93569 0.91003 0.77162 0.91038 0.91316 0.91335 0.91418 0.85355 0.84025 0.83735 0.83957 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.27 9.26 71.98 0.67 -5.61 16 2 C 0.06 2.30 5.68 86.30 0.49 2.79 16 3 N -0.54 -23.16 4.64 -900.78 -4.18 -27.34 16 4 C 0.20 10.79 4.54 85.56 0.39 11.17 16 5 C -0.52 -29.65 8.39 25.60 0.21 -29.44 16 6 H 0.06 3.22 7.39 -2.91 -0.02 3.19 16 7 C 0.00 0.15 5.46 84.66 0.46 0.62 16 8 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 9 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.03 0.86 4.37 86.30 0.38 1.23 16 14 C 0.13 3.67 3.20 30.59 0.10 3.76 16 15 H 0.09 2.87 6.31 -2.39 -0.02 2.85 16 16 O -0.56 -18.30 13.25 -144.33 -1.91 -20.21 16 17 C 0.04 0.84 5.57 71.98 0.40 1.24 16 18 O -0.39 -10.00 10.29 -144.33 -1.49 -11.49 16 19 C 0.10 1.89 6.06 71.24 0.43 2.33 16 20 C -0.11 -2.21 5.51 -19.87 -0.11 -2.32 16 21 C -0.11 -2.15 9.70 22.27 0.22 -1.94 16 22 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 23 C -0.12 -1.80 10.05 22.27 0.22 -1.58 16 24 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 25 C -0.11 -2.13 9.70 22.27 0.22 -1.91 16 26 H 0.03 1.47 6.29 -2.39 -0.02 1.46 16 27 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.06 1.92 6.33 -2.39 -0.02 1.91 16 29 H 0.06 2.49 6.98 -2.39 -0.02 2.47 16 30 H 0.08 2.64 6.31 -2.39 -0.02 2.62 16 31 H -0.02 -0.97 6.02 -2.39 -0.01 -0.99 16 32 H 0.00 -0.08 7.91 -2.38 -0.02 -0.10 16 33 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.05 1.47 6.05 -2.39 -0.01 1.45 16 35 H 0.07 2.37 7.92 -2.38 -0.02 2.36 16 36 H 0.38 9.82 9.05 -74.06 -0.67 9.15 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 40 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 41 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 42 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 45 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -69.95 365.67 -0.44 -70.39 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.30 Total: 20.74 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: 4.52 Total: -23.41 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -3.90 Total: -83.06 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -3.40 Total: -31.70 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -69.95 -0.44 -70.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070989019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.477 kcal (2) G-P(sol) polarization free energy of solvation -69.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds