Wall clock time and date at job start Tue Mar 31 2020 06:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00117 * 2 1 4 4 C 1.52995 * 109.47255 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47011 * 65.11072 * 4 3 2 6 6 C 1.46897 * 111.00465 * 199.82836 * 5 4 3 7 7 C 1.50697 * 109.47004 * 66.04304 * 6 5 4 8 8 H 1.08004 * 120.00381 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00041 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00183 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00055 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47309 * 89.99938 * 11 9 7 13 13 H 1.48504 * 109.46931 * 210.00112 * 11 9 7 14 14 H 1.48504 * 109.47090 * 329.99530 * 11 9 7 15 15 C 1.46906 * 111.00283 * 75.87228 * 5 4 3 16 16 C 1.52993 * 109.47581 * 199.69035 * 15 5 4 17 17 C 1.52995 * 109.47225 * 174.84908 * 16 15 5 18 18 O 1.42901 * 109.46943 * 180.02562 * 17 16 15 19 19 C 1.35907 * 116.99739 * 180.02562 * 18 17 16 20 20 C 1.38735 * 120.05429 * 180.02562 * 19 18 17 21 21 C 1.38144 * 119.94441 * 179.97438 * 20 19 18 22 22 C 1.38265 * 120.05540 * 0.02562 * 21 20 19 23 23 C 1.38271 * 120.11315 * 359.95153 * 22 21 20 24 24 C 1.38151 * 120.05044 * 0.04630 * 23 22 21 25 25 H 1.08997 * 109.46969 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46516 * 299.99511 * 1 2 3 27 27 H 1.08994 * 109.47397 * 59.99378 * 1 2 3 28 28 H 1.09000 * 109.46686 * 60.00414 * 3 2 1 29 29 H 1.08997 * 109.46966 * 300.00744 * 3 2 1 30 30 H 1.08992 * 109.47509 * 305.11099 * 4 3 2 31 31 H 1.09002 * 109.47077 * 185.10638 * 4 3 2 32 32 H 1.08998 * 109.47374 * 186.04674 * 6 5 4 33 33 H 1.08997 * 109.46872 * 306.04668 * 6 5 4 34 34 H 0.97001 * 120.00315 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.46867 * 79.69010 * 15 5 4 36 36 H 1.09004 * 109.46779 * 319.69368 * 15 5 4 37 37 H 1.09003 * 109.46909 * 54.84778 * 16 15 5 38 38 H 1.08997 * 109.47208 * 294.85199 * 16 15 5 39 39 H 1.09003 * 109.47282 * 60.00099 * 17 16 15 40 40 H 1.09003 * 109.47327 * 299.99538 * 17 16 15 41 41 H 1.08004 * 120.02737 * 359.70050 * 20 19 18 42 42 H 1.07997 * 119.97305 * 179.97438 * 21 20 19 43 43 H 1.07995 * 119.94786 * 179.97438 * 22 21 20 44 44 H 1.07998 * 119.97274 * 180.02562 * 23 22 21 45 45 H 1.08002 * 120.02050 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9781 0.5647 -1.2554 6 6 5.3299 0.0063 -1.1193 7 6 5.3034 -1.1413 -0.1429 8 1 4.3750 -1.4275 0.3290 9 6 6.4643 -1.8259 0.1481 10 7 7.5947 -1.4777 -0.4268 11 14 6.4312 -3.2488 1.3578 12 1 6.1625 -4.5135 0.6274 13 1 7.7437 -3.3440 2.0461 14 1 5.3613 -3.0202 2.3620 15 6 3.9139 1.5232 -2.3669 16 6 3.8960 0.7638 -3.6949 17 6 3.7001 1.7530 -4.8455 18 8 3.6828 1.0435 -6.0858 19 6 3.5166 1.7803 -7.2157 20 6 3.4896 1.1562 -8.4545 21 6 3.3200 1.9072 -9.6014 22 6 3.1776 3.2798 -9.5156 23 6 3.2037 3.9042 -8.2822 24 6 3.3730 3.1576 -7.1323 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8507 0.5670 0.8415 31 1 3.9784 2.1764 0.0921 32 1 5.6753 -0.3502 -2.0897 33 1 6.0068 0.7786 -0.7539 34 1 8.4115 -1.9591 -0.2219 35 1 4.7856 2.1767 -2.3338 36 1 3.0073 2.1219 -2.2784 37 1 3.0773 0.0442 -3.6910 38 1 4.8416 0.2375 -3.8253 39 1 4.5188 2.4726 -4.8494 40 1 2.7544 2.2792 -4.7152 41 1 3.6056 0.0845 -8.5224 42 1 3.2993 1.4219 -10.5660 43 1 3.0455 3.8653 -10.4135 44 1 3.0919 4.9765 -8.2178 45 1 3.3937 3.6458 -6.1691 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071230944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:17 Heat of formation + Delta-G solvation = -57.877164 kcal Electronic energy + Delta-G solvation = -23057.771476 eV Core-core repulsion = 19654.794295 eV Total energy + Delta-G solvation = -3402.977181 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10762 -37.99687 -37.46242 -36.33867 -32.89421 -32.13607 -31.07118 -29.83529 -29.15960 -26.96743 -25.94136 -24.61058 -22.86546 -22.32934 -22.13843 -21.01222 -19.73086 -18.21411 -16.58747 -16.21555 -16.09937 -15.87640 -15.78978 -15.57912 -14.84930 -14.60395 -14.47547 -14.03697 -13.78840 -13.54987 -13.49871 -13.04580 -12.90398 -12.27628 -12.09052 -11.81790 -11.77158 -11.59202 -11.34556 -11.19981 -11.16216 -10.87393 -10.75589 -10.68681 -10.57941 -10.35063 -10.06423 -9.64618 -9.26602 -9.13433 -9.07842 -8.37259 -8.26480 -7.21494 -5.96740 -3.96655 1.21058 1.35012 3.20281 3.37611 3.43214 3.48057 3.68207 4.24985 4.48461 4.69229 4.74860 4.85696 4.99162 5.08885 5.17251 5.26219 5.36760 5.38799 5.42440 5.45743 5.49426 5.55977 5.59981 5.71976 5.74923 5.79842 5.85855 5.88179 5.97019 6.05284 6.19073 6.21476 6.29356 6.39362 6.48694 6.62655 6.70075 6.74296 7.28480 7.34950 7.45301 7.64884 7.89645 8.14424 8.22786 8.60369 9.13126 9.67331 11.14279 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.003269 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.793457 B = 8564.340934 C = 9883.402325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.070 3.930 4 C 0.060 3.940 5 N -0.526 5.526 6 C 0.192 3.808 7 C -0.503 4.503 8 H 0.068 0.932 9 C 0.054 3.946 10 N -0.901 5.901 11 Si 0.897 3.103 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.273 1.273 15 C 0.060 3.940 16 C -0.111 4.111 17 C 0.064 3.936 18 O -0.311 6.311 19 C 0.137 3.863 20 C -0.156 4.156 21 C -0.082 4.082 22 C -0.167 4.167 23 C -0.081 4.081 24 C -0.212 4.212 25 H 0.080 0.920 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.097 0.903 31 H 0.035 0.965 32 H 0.033 0.967 33 H -0.011 1.011 34 H 0.260 0.740 35 H 0.027 0.973 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.538 11.138 -11.727 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C -0.007 4.007 4 C -0.068 4.068 5 N -0.250 5.250 6 C 0.068 3.932 7 C -0.542 4.542 8 H 0.086 0.914 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.198 1.198 15 C -0.069 4.069 16 C -0.149 4.149 17 C -0.012 4.012 18 O -0.224 6.224 19 C 0.091 3.909 20 C -0.175 4.175 21 C -0.100 4.100 22 C -0.185 4.185 23 C -0.100 4.100 24 C -0.231 4.231 25 H 0.099 0.901 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.115 0.885 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.517 10.319 -11.783 19.441 hybrid contribution 0.438 0.422 0.849 1.044 sum -11.079 10.740 -10.934 18.912 Atomic orbital electron populations 1.22669 0.82944 1.02148 0.98860 1.88134 1.17685 1.27302 1.94991 1.22625 0.95095 0.84726 0.98288 1.22023 0.91601 0.97712 0.95489 1.61988 1.29855 1.31275 1.01892 1.19782 0.81755 0.94018 0.97684 1.21226 0.94490 1.14392 1.24050 0.91396 1.24984 0.95453 0.97609 0.96638 1.69961 0.99129 1.41335 1.43691 0.86514 0.77041 0.82744 0.81215 1.20675 1.21505 1.19822 1.21880 0.99259 0.93950 0.91793 1.21484 1.04725 0.97954 0.90765 1.22892 1.00736 0.95794 0.81766 1.86126 1.86713 1.36341 1.13204 1.19131 0.94508 0.90109 0.87121 1.20511 1.06381 1.00819 0.89800 1.20955 0.97555 0.93872 0.97633 1.21023 1.05077 0.94850 0.97591 1.20943 0.97368 0.99578 0.92065 1.21323 1.08674 0.93154 0.99942 0.90136 0.95046 0.94867 0.94262 0.94321 0.88468 0.94707 0.94865 0.99330 0.93050 0.95514 0.92420 0.90063 0.90261 0.92243 0.92374 0.85147 0.85546 0.86166 0.86003 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.36 -6.60 10.65 -35.23 -0.38 -6.98 16 3 C 0.07 1.12 6.12 37.16 0.23 1.35 16 4 C 0.06 1.15 5.17 -3.83 -0.02 1.13 16 5 N -0.53 -11.18 4.31 -236.08 -1.02 -12.20 16 6 C 0.19 4.98 4.55 -4.98 -0.02 4.95 16 7 C -0.50 -14.24 8.23 -34.44 -0.28 -14.53 16 8 H 0.07 1.95 7.31 -52.48 -0.38 1.57 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 11 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.06 1.03 4.81 -3.82 -0.02 1.02 16 16 C -0.11 -1.86 5.62 -26.74 -0.15 -2.01 16 17 C 0.06 0.87 4.74 37.16 0.18 1.05 16 18 O -0.31 -4.73 10.14 -19.45 -0.20 -4.93 16 19 C 0.14 1.85 6.69 -39.22 -0.26 1.59 16 20 C -0.16 -1.88 9.99 -39.43 -0.39 -2.28 16 21 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 22 C -0.17 -1.58 10.04 -39.56 -0.40 -1.98 16 23 C -0.08 -0.81 10.04 -39.60 -0.40 -1.21 16 24 C -0.21 -2.48 9.04 -39.43 -0.36 -2.83 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.57 6.67 -51.93 -0.35 0.22 16 30 H 0.10 2.11 6.58 -51.93 -0.34 1.77 16 31 H 0.03 0.61 8.00 -51.93 -0.42 0.19 16 32 H 0.03 0.92 6.72 -51.93 -0.35 0.57 16 33 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.03 0.46 8.00 -51.93 -0.42 0.05 16 36 H 0.06 0.86 6.45 -51.93 -0.34 0.52 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.08 1.51 6.95 -51.93 -0.36 1.15 16 39 H 0.06 0.76 7.66 -51.93 -0.40 0.36 16 40 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 41 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -31.96 368.45 -9.04 -41.00 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -7.44 Total: -1.27 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.28 Total: -11.99 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.28 Total: -38.45 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.57 Total: -11.91 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.96 -9.04 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071230944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.881 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds