Wall clock time and date at job start Tue Mar 31 2020 06:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00117 * 2 1 4 4 C 1.52995 * 109.47255 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47011 * 65.11072 * 4 3 2 6 6 C 1.46897 * 111.00465 * 199.82836 * 5 4 3 7 7 C 1.50697 * 109.47004 * 66.04304 * 6 5 4 8 8 H 1.08004 * 120.00381 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00041 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00183 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00055 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47309 * 89.99938 * 11 9 7 13 13 H 1.48504 * 109.46931 * 210.00112 * 11 9 7 14 14 H 1.48504 * 109.47090 * 329.99530 * 11 9 7 15 15 C 1.46906 * 111.00283 * 75.87228 * 5 4 3 16 16 C 1.52993 * 109.47581 * 199.69035 * 15 5 4 17 17 C 1.52995 * 109.47225 * 174.84908 * 16 15 5 18 18 O 1.42901 * 109.46943 * 180.02562 * 17 16 15 19 19 C 1.35907 * 116.99739 * 180.02562 * 18 17 16 20 20 C 1.38735 * 120.05429 * 180.02562 * 19 18 17 21 21 C 1.38144 * 119.94441 * 179.97438 * 20 19 18 22 22 C 1.38265 * 120.05540 * 0.02562 * 21 20 19 23 23 C 1.38271 * 120.11315 * 359.95153 * 22 21 20 24 24 C 1.38151 * 120.05044 * 0.04630 * 23 22 21 25 25 H 1.08997 * 109.46969 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46516 * 299.99511 * 1 2 3 27 27 H 1.08994 * 109.47397 * 59.99378 * 1 2 3 28 28 H 1.09000 * 109.46686 * 60.00414 * 3 2 1 29 29 H 1.08997 * 109.46966 * 300.00744 * 3 2 1 30 30 H 1.08992 * 109.47509 * 305.11099 * 4 3 2 31 31 H 1.09002 * 109.47077 * 185.10638 * 4 3 2 32 32 H 1.08998 * 109.47374 * 186.04674 * 6 5 4 33 33 H 1.08997 * 109.46872 * 306.04668 * 6 5 4 34 34 H 0.97001 * 120.00315 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.46867 * 79.69010 * 15 5 4 36 36 H 1.09004 * 109.46779 * 319.69368 * 15 5 4 37 37 H 1.09003 * 109.46909 * 54.84778 * 16 15 5 38 38 H 1.08997 * 109.47208 * 294.85199 * 16 15 5 39 39 H 1.09003 * 109.47282 * 60.00099 * 17 16 15 40 40 H 1.09003 * 109.47327 * 299.99538 * 17 16 15 41 41 H 1.08004 * 120.02737 * 359.70050 * 20 19 18 42 42 H 1.07997 * 119.97305 * 179.97438 * 21 20 19 43 43 H 1.07995 * 119.94786 * 179.97438 * 22 21 20 44 44 H 1.07998 * 119.97274 * 180.02562 * 23 22 21 45 45 H 1.08002 * 120.02050 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9781 0.5647 -1.2554 6 6 5.3299 0.0063 -1.1193 7 6 5.3034 -1.1413 -0.1429 8 1 4.3750 -1.4275 0.3290 9 6 6.4643 -1.8259 0.1481 10 7 7.5947 -1.4777 -0.4268 11 14 6.4312 -3.2488 1.3578 12 1 6.1625 -4.5135 0.6274 13 1 7.7437 -3.3440 2.0461 14 1 5.3613 -3.0202 2.3620 15 6 3.9139 1.5232 -2.3669 16 6 3.8960 0.7638 -3.6949 17 6 3.7001 1.7530 -4.8455 18 8 3.6828 1.0435 -6.0858 19 6 3.5166 1.7803 -7.2157 20 6 3.4896 1.1562 -8.4545 21 6 3.3200 1.9072 -9.6014 22 6 3.1776 3.2798 -9.5156 23 6 3.2037 3.9042 -8.2822 24 6 3.3730 3.1576 -7.1323 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8507 0.5670 0.8415 31 1 3.9784 2.1764 0.0921 32 1 5.6753 -0.3502 -2.0897 33 1 6.0068 0.7786 -0.7539 34 1 8.4115 -1.9591 -0.2219 35 1 4.7856 2.1767 -2.3338 36 1 3.0073 2.1219 -2.2784 37 1 3.0773 0.0442 -3.6910 38 1 4.8416 0.2375 -3.8253 39 1 4.5188 2.4726 -4.8494 40 1 2.7544 2.2792 -4.7152 41 1 3.6056 0.0845 -8.5224 42 1 3.2993 1.4219 -10.5660 43 1 3.0455 3.8653 -10.4135 44 1 3.0919 4.9765 -8.2178 45 1 3.3937 3.6458 -6.1691 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071230944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:16 Heat of formation + Delta-G solvation = -78.280900 kcal Electronic energy + Delta-G solvation = -23058.656248 eV Core-core repulsion = 19654.794295 eV Total energy + Delta-G solvation = -3403.861954 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.04975 -39.39831 -38.44476 -37.76282 -34.85747 -33.64194 -31.89478 -30.93149 -30.55818 -28.69214 -27.05972 -26.07447 -24.27988 -23.72345 -23.11666 -22.16431 -21.31565 -19.17738 -18.57041 -17.43691 -17.24611 -17.04098 -16.97839 -16.71478 -16.42242 -16.07507 -15.47403 -15.40277 -15.19075 -14.89735 -14.45921 -14.32303 -14.14015 -13.86359 -13.51624 -13.34790 -13.03362 -12.79225 -12.64524 -12.58253 -12.45711 -12.40002 -12.25642 -12.22394 -11.89338 -11.70409 -11.63043 -11.35345 -11.18757 -10.58593 -10.40421 -9.93969 -9.15923 -8.94051 -8.18231 -6.26314 0.40622 0.50898 1.39941 1.41938 1.53142 2.17044 2.42107 2.86504 3.07069 3.14169 3.31422 3.85015 3.89798 3.98884 4.07979 4.21308 4.23044 4.29540 4.36303 4.39703 4.41383 4.51658 4.52835 4.59008 4.63037 4.64044 4.69144 4.74887 4.79252 4.91581 4.99261 5.10501 5.12878 5.25394 5.26689 5.31690 5.40554 5.49715 5.61039 5.70065 5.90414 6.10837 6.35135 6.47892 6.51026 6.72720 6.90920 7.42633 8.92728 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.003269 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.793457 B = 8564.340934 C = 9883.402325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.077 3.923 4 C 0.057 3.943 5 N -0.538 5.538 6 C 0.210 3.790 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.965 3.035 12 H -0.276 1.276 13 H -0.281 1.281 14 H -0.266 1.266 15 C 0.063 3.937 16 C -0.103 4.103 17 C 0.073 3.927 18 O -0.338 6.338 19 C 0.105 3.895 20 C -0.177 4.177 21 C -0.083 4.083 22 C -0.164 4.164 23 C -0.085 4.085 24 C -0.221 4.221 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.005 0.995 33 H -0.037 1.037 34 H 0.263 0.737 35 H 0.027 0.973 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.127 0.873 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.438 12.765 -12.379 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C 0.000 4.000 4 C -0.071 4.071 5 N -0.262 5.262 6 C 0.084 3.916 7 C -0.554 4.554 8 H 0.078 0.922 9 C -0.196 4.196 10 N -0.576 5.576 11 Si 0.790 3.210 12 H -0.202 1.202 13 H -0.206 1.206 14 H -0.190 1.190 15 C -0.066 4.066 16 C -0.141 4.141 17 C -0.002 4.002 18 O -0.253 6.253 19 C 0.060 3.940 20 C -0.196 4.196 21 C -0.101 4.101 22 C -0.182 4.182 23 C -0.102 4.102 24 C -0.240 4.240 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.023 0.977 33 H -0.020 1.020 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.145 0.855 42 H 0.170 0.830 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.445 11.964 -12.441 21.879 hybrid contribution 0.981 -0.027 0.951 1.367 sum -12.464 11.937 -11.490 20.733 Atomic orbital electron populations 1.22854 0.80488 1.03084 1.00529 1.88068 1.20511 1.28629 1.95383 1.22586 0.92313 0.84553 1.00557 1.22069 0.94403 0.97506 0.93097 1.61891 1.26594 1.33588 1.04136 1.19368 0.83947 0.92955 0.95323 1.21472 0.94255 1.15225 1.24477 0.92247 1.25861 0.95020 1.00315 0.98452 1.70081 0.99779 1.42680 1.45082 0.85449 0.77453 0.79184 0.78937 1.20166 1.20598 1.19024 1.21949 1.00911 0.93360 0.90346 1.21328 1.02173 0.98325 0.92299 1.22742 1.02316 0.94613 0.80518 1.86060 1.87591 1.37597 1.14042 1.19446 0.96686 0.91133 0.86779 1.20741 1.07308 1.01155 0.90358 1.21307 0.96464 0.94369 0.97920 1.21457 1.03289 0.94834 0.98624 1.21335 0.96304 1.00958 0.91650 1.21529 1.08726 0.92479 1.01260 0.89746 0.93001 0.93414 0.91399 0.92348 0.91879 0.92984 0.97710 1.01950 0.92813 0.95467 0.88845 0.91426 0.93841 0.91353 0.89925 0.85522 0.82956 0.83177 0.83278 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.41 -14.33 10.65 -148.98 -1.59 -15.91 16 3 C 0.08 2.30 6.12 71.98 0.44 2.74 16 4 C 0.06 2.18 5.17 86.30 0.45 2.63 16 5 N -0.54 -23.42 4.31 -900.83 -3.88 -27.30 16 6 C 0.21 11.45 4.55 85.56 0.39 11.84 16 7 C -0.52 -30.33 8.23 25.60 0.21 -30.12 16 8 H 0.06 3.53 7.31 -2.91 -0.02 3.51 16 9 C 0.00 0.06 5.46 84.66 0.46 0.53 16 10 N -0.94 -57.74 13.29 21.45 0.28 -57.45 16 11 Si 0.96 46.12 29.54 68.60 2.03 48.15 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 15 C 0.06 2.15 4.81 86.30 0.41 2.56 16 16 C -0.10 -3.57 5.62 30.59 0.17 -3.40 16 17 C 0.07 2.01 4.74 71.98 0.34 2.35 16 18 O -0.34 -10.64 10.14 -92.51 -0.94 -11.57 16 19 C 0.10 2.82 6.69 22.50 0.15 2.97 16 20 C -0.18 -4.25 9.99 22.37 0.22 -4.03 16 21 C -0.08 -1.49 10.04 22.25 0.22 -1.27 16 22 C -0.16 -2.61 10.04 22.28 0.22 -2.39 16 23 C -0.08 -1.46 10.04 22.26 0.22 -1.24 16 24 C -0.22 -4.86 9.04 22.37 0.20 -4.66 16 25 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.51 6.67 -2.39 -0.02 1.50 16 30 H 0.06 2.82 6.58 -2.39 -0.02 2.80 16 31 H 0.05 1.77 8.00 -2.39 -0.02 1.75 16 32 H 0.00 0.29 6.72 -2.39 -0.02 0.27 16 33 H -0.04 -2.16 8.12 -2.39 -0.02 -2.18 16 34 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.03 0.94 8.00 -2.39 -0.02 0.92 16 36 H 0.09 2.55 6.45 -2.38 -0.02 2.53 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.04 1.79 6.95 -2.39 -0.02 1.77 16 39 H 0.07 1.72 7.66 -2.39 -0.02 1.71 16 40 H 0.08 1.84 7.66 -2.39 -0.02 1.82 16 41 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 43 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 45 H 0.14 2.61 6.30 -2.91 -0.02 2.59 16 Total: -1.00 -72.53 368.45 2.23 -70.31 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.95 Total: 13.37 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 5.37 Total: -19.59 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -3.59 Total: -84.75 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -2.52 Total: -27.49 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -72.53 2.23 -70.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071230944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.975 kcal (2) G-P(sol) polarization free energy of solvation -72.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds