Wall clock time and date at job start Tue Mar 31 2020 07:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 110.27521 * 2 1 4 4 C 1.54596 * 110.30935 * 237.80859 * 2 1 3 5 5 C 1.54934 * 102.92468 * 263.04112 * 4 2 1 6 6 N 1.48536 * 103.22480 * 322.58554 * 5 4 2 7 7 C 1.46906 * 110.99881 * 159.71823 * 6 5 4 8 8 C 1.50699 * 109.47140 * 52.60402 * 7 6 5 9 9 O 1.21282 * 120.00041 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99614 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99746 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47101 * 89.99744 * 11 10 8 13 13 H 1.08000 * 120.00396 * 0.02562 * 12 11 10 14 14 C 1.37883 * 120.00137 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99829 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00036 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47110 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.46877 * 119.99580 * 16 14 12 19 19 H 1.48502 * 109.46990 * 239.99406 * 16 14 12 20 20 C 1.46492 * 120.00382 * 359.97438 * 10 8 7 21 21 C 1.53000 * 109.46880 * 90.00552 * 20 10 8 22 22 C 1.47202 * 109.47362 * 180.02562 * 21 20 10 23 23 N 8.13652 * 81.05729 * 140.95707 * 2 1 3 24 24 C 1.47904 * 105.82311 * 39.20666 * 6 5 4 25 25 H 1.09000 * 109.47434 * 297.91010 * 1 2 3 26 26 H 1.09003 * 109.47487 * 57.90673 * 1 2 3 27 27 H 1.09002 * 109.47236 * 177.90583 * 1 2 3 28 28 H 1.09002 * 109.46941 * 182.09031 * 3 2 1 29 29 H 1.08998 * 109.47410 * 302.08999 * 3 2 1 30 30 H 1.09005 * 109.46656 * 62.09274 * 3 2 1 31 31 H 1.09001 * 110.72670 * 21.39937 * 4 2 1 32 32 H 1.09010 * 110.72652 * 144.50450 * 4 2 1 33 33 H 1.09001 * 110.67291 * 204.15260 * 5 4 2 34 34 H 1.08998 * 110.66739 * 81.01715 * 5 4 2 35 35 H 1.09004 * 109.47040 * 172.60340 * 7 6 5 36 36 H 1.09000 * 109.47033 * 292.60292 * 7 6 5 37 37 H 1.08993 * 109.47349 * 209.99745 * 11 10 8 38 38 H 1.09001 * 109.47129 * 330.00406 * 11 10 8 39 39 H 0.96998 * 120.00012 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.47753 * 210.00068 * 20 10 8 41 41 H 1.09006 * 109.47398 * 330.00846 * 20 10 8 42 42 H 1.09009 * 109.47062 * 299.99889 * 21 20 10 43 43 H 1.09003 * 109.47589 * 59.99984 * 21 20 10 44 44 H 1.09001 * 109.91912 * 94.01756 * 24 6 5 45 45 H 1.08997 * 109.92108 * 215.12357 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0601 1.4352 0.0000 4 6 2.0665 -0.7724 -1.2270 5 6 2.3584 -2.1803 -0.6497 6 7 2.8809 -1.8885 0.7098 7 6 2.7668 -3.0654 1.5814 8 6 3.4044 -4.2531 0.9078 9 8 3.9050 -4.1311 -0.1901 10 7 3.4182 -5.4510 1.5255 11 6 4.0376 -6.6057 0.8704 12 6 5.4946 -6.6763 1.2488 13 1 5.9170 -5.9353 1.9114 14 6 6.2886 -7.6868 0.7492 15 7 5.7742 -8.5894 -0.0573 16 14 8.0944 -7.7746 1.2189 17 1 8.4236 -6.6507 2.1319 18 1 8.3658 -9.0644 1.9029 19 1 8.9295 -7.6782 -0.0053 20 6 2.8140 -5.5983 2.8518 21 6 1.3401 -5.9800 2.7012 22 6 0.7327 -6.1275 4.0339 23 7 0.2651 -6.2426 5.0629 24 6 2.0645 -0.7673 1.2235 25 1 -0.3634 0.4810 0.9081 26 1 -0.3634 0.5460 -0.8706 27 1 -0.3634 -1.0270 -0.0376 28 1 3.1494 1.4201 -0.0375 29 1 1.6739 1.9653 -0.8706 30 1 1.7348 1.9427 0.9082 31 1 1.3102 -0.8259 -2.0101 32 1 2.9789 -0.3107 -1.6047 33 1 3.1105 -2.6935 -1.2489 34 1 1.4433 -2.7696 -0.5918 35 1 3.2734 -2.8683 2.5262 36 1 1.7143 -3.2767 1.7707 37 1 3.5345 -7.5181 1.1905 38 1 3.9478 -6.5015 -0.2109 39 1 6.3326 -9.3005 -0.4085 40 1 3.3368 -6.3788 3.4047 41 1 2.8916 -4.6553 3.3932 42 1 0.8172 -5.1995 2.1484 43 1 1.2624 -6.9229 2.1598 44 1 1.2323 -1.1532 1.8124 45 1 2.6804 -0.1102 1.8375 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072827400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:34 Heat of formation + Delta-G solvation = -6.008475 kcal Electronic energy + Delta-G solvation = -24105.514476 eV Core-core repulsion = 20737.079241 eV Total energy + Delta-G solvation = -3368.435235 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.01694 -38.64951 -36.87211 -35.30934 -34.07324 -32.84674 -30.86034 -30.01668 -28.28838 -27.48981 -26.62376 -24.48064 -23.99024 -22.59871 -21.14947 -19.27407 -18.42741 -17.57744 -16.61854 -16.48355 -15.94897 -15.35271 -15.08449 -14.79582 -14.66499 -14.19760 -14.01776 -13.81148 -13.62313 -13.45497 -13.00870 -12.96429 -12.58733 -12.45513 -12.34336 -12.15934 -11.87247 -11.76078 -11.62424 -11.48703 -11.29602 -11.27079 -10.97195 -10.83773 -10.76549 -10.64326 -10.62204 -10.46454 -10.15292 -9.66541 -8.86453 -8.47034 -8.23865 -7.82202 -6.08453 -4.12655 2.70279 2.78420 3.28410 3.29188 3.37577 3.41733 3.55309 4.03734 4.26725 4.42301 4.49731 4.62986 4.75410 4.93750 5.05090 5.10940 5.24176 5.26793 5.29209 5.34302 5.35872 5.43781 5.46652 5.48595 5.58725 5.61347 5.77809 5.79070 5.80951 5.87164 5.96256 6.05755 6.07999 6.17501 6.28615 6.48344 6.86634 7.02400 7.11867 7.36157 7.44445 7.54841 7.88235 8.17862 8.26090 8.85767 9.00857 9.53101 10.99717 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.004507 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.590849 B = 6211.177528 C = 7792.854559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 C -0.135 4.135 4 C -0.117 4.117 5 C 0.034 3.966 6 N -0.498 5.498 7 C 0.024 3.976 8 C 0.508 3.492 9 O -0.517 6.517 10 N -0.598 5.598 11 C 0.246 3.754 12 C -0.527 4.527 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.118 3.882 21 C -0.050 4.050 22 C 0.217 3.783 23 N -0.445 5.445 24 C 0.043 3.957 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.035 0.965 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.263 0.737 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.117 0.883 44 H 0.043 0.957 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.246 14.425 1.413 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 C -0.192 4.192 4 C -0.155 4.155 5 C -0.093 4.093 6 N -0.223 5.223 7 C -0.107 4.107 8 C 0.294 3.706 9 O -0.392 6.392 10 N -0.330 5.330 11 C 0.127 3.873 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.009 4.009 21 C -0.092 4.092 22 C -0.101 4.101 23 N -0.122 5.122 24 C -0.085 4.085 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.134 0.866 34 H 0.053 0.947 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.061 0.939 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.056 14.263 2.233 18.184 hybrid contribution 0.274 -0.441 0.083 0.526 sum -10.782 13.822 2.316 17.682 Atomic orbital electron populations 1.21899 0.94336 1.01644 1.01628 1.21416 0.95171 0.95797 0.95504 1.21843 1.01344 0.94714 1.01298 1.22683 1.00902 0.95637 0.96272 1.23503 0.99252 0.95955 0.90585 1.64651 1.50787 1.04496 1.02329 1.22366 0.99608 0.90799 0.97927 1.20162 0.80546 0.83602 0.86245 1.90619 1.45076 1.83302 1.20237 1.48210 1.56409 1.11115 1.17273 1.19339 0.92488 0.81127 0.94348 1.21462 0.94491 1.11366 1.29233 0.92286 1.24913 0.98731 0.95470 0.94860 1.69928 1.36205 1.14893 1.32312 0.86464 0.84957 0.77765 0.78380 1.19760 1.21032 1.20892 1.21300 0.89773 1.03113 0.86711 1.19906 0.96975 1.05956 0.86333 1.29108 0.93328 0.92859 0.94819 1.81212 1.09654 1.09318 1.12055 1.23077 0.95457 0.93614 0.96370 0.92720 0.92516 0.92773 0.92064 0.92790 0.92893 0.91389 0.90687 0.86649 0.94690 0.88301 0.92607 0.94801 0.93584 0.92759 0.88684 0.90714 0.87851 0.86457 0.93919 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.21 37.15 0.30 -0.84 16 2 C -0.08 -0.76 0.97 -153.15 -0.15 -0.91 16 3 C -0.13 -1.16 8.24 37.16 0.31 -0.85 16 4 C -0.12 -1.32 6.16 -24.87 -0.15 -1.47 16 5 C 0.03 0.48 5.30 -1.90 -0.01 0.47 16 6 N -0.50 -7.03 5.26 -231.88 -1.22 -8.25 16 7 C 0.02 0.33 4.07 -4.97 -0.02 0.31 16 8 C 0.51 9.30 7.38 -10.99 -0.08 9.21 16 9 O -0.52 -11.66 13.10 5.56 0.07 -11.59 16 10 N -0.60 -10.80 2.46 -175.06 -0.43 -11.23 16 11 C 0.25 5.76 5.16 -5.19 -0.03 5.73 16 12 C -0.53 -14.04 9.39 -34.44 -0.32 -14.37 16 13 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 16 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.12 1.55 5.17 -4.05 -0.02 1.53 16 21 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 22 C 0.22 2.60 15.43 -20.76 -0.32 2.28 16 23 N -0.45 -6.50 18.54 42.16 0.78 -5.72 16 24 C 0.04 0.47 6.02 -2.75 -0.02 0.45 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 32 H 0.07 0.88 7.85 -51.92 -0.41 0.47 16 33 H 0.12 2.02 5.97 -51.93 -0.31 1.71 16 34 H 0.03 0.48 8.02 -51.93 -0.42 0.06 16 35 H 0.10 1.24 7.40 -51.93 -0.38 0.85 16 36 H 0.06 0.62 6.85 -51.93 -0.36 0.26 16 37 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 38 H 0.05 1.23 7.42 -51.93 -0.39 0.85 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 41 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 42 H 0.10 0.88 7.22 -51.92 -0.37 0.51 16 43 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.04 0.43 7.11 -51.93 -0.37 0.06 16 45 H 0.08 0.83 7.69 -51.93 -0.40 0.43 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -31.85 365.53 -7.84 -39.70 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -7.49 Total: -2.44 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -0.78 Total: 2.47 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.13 Total: -49.93 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.07 Total: -11.59 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.85 -7.84 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072827400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.688 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds