Wall clock time and date at job start Tue Mar 31 2020 07:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 110.27521 * 2 1 4 4 C 1.54596 * 110.30935 * 237.80859 * 2 1 3 5 5 C 1.54934 * 102.92468 * 263.04112 * 4 2 1 6 6 N 1.48536 * 103.22480 * 322.58554 * 5 4 2 7 7 C 1.46906 * 110.99881 * 159.71823 * 6 5 4 8 8 C 1.50699 * 109.47140 * 52.60402 * 7 6 5 9 9 O 1.21282 * 120.00041 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99614 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99746 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47101 * 89.99744 * 11 10 8 13 13 H 1.08000 * 120.00396 * 0.02562 * 12 11 10 14 14 C 1.37883 * 120.00137 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99829 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00036 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47110 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.46877 * 119.99580 * 16 14 12 19 19 H 1.48502 * 109.46990 * 239.99406 * 16 14 12 20 20 C 1.46492 * 120.00382 * 359.97438 * 10 8 7 21 21 C 1.53000 * 109.46880 * 90.00552 * 20 10 8 22 22 C 1.47202 * 109.47362 * 180.02562 * 21 20 10 23 23 N 8.13652 * 81.05729 * 140.95707 * 2 1 3 24 24 C 1.47904 * 105.82311 * 39.20666 * 6 5 4 25 25 H 1.09000 * 109.47434 * 297.91010 * 1 2 3 26 26 H 1.09003 * 109.47487 * 57.90673 * 1 2 3 27 27 H 1.09002 * 109.47236 * 177.90583 * 1 2 3 28 28 H 1.09002 * 109.46941 * 182.09031 * 3 2 1 29 29 H 1.08998 * 109.47410 * 302.08999 * 3 2 1 30 30 H 1.09005 * 109.46656 * 62.09274 * 3 2 1 31 31 H 1.09001 * 110.72670 * 21.39937 * 4 2 1 32 32 H 1.09010 * 110.72652 * 144.50450 * 4 2 1 33 33 H 1.09001 * 110.67291 * 204.15260 * 5 4 2 34 34 H 1.08998 * 110.66739 * 81.01715 * 5 4 2 35 35 H 1.09004 * 109.47040 * 172.60340 * 7 6 5 36 36 H 1.09000 * 109.47033 * 292.60292 * 7 6 5 37 37 H 1.08993 * 109.47349 * 209.99745 * 11 10 8 38 38 H 1.09001 * 109.47129 * 330.00406 * 11 10 8 39 39 H 0.96998 * 120.00012 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.47753 * 210.00068 * 20 10 8 41 41 H 1.09006 * 109.47398 * 330.00846 * 20 10 8 42 42 H 1.09009 * 109.47062 * 299.99889 * 21 20 10 43 43 H 1.09003 * 109.47589 * 59.99984 * 21 20 10 44 44 H 1.09001 * 109.91912 * 94.01756 * 24 6 5 45 45 H 1.08997 * 109.92108 * 215.12357 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0601 1.4352 0.0000 4 6 2.0665 -0.7724 -1.2270 5 6 2.3584 -2.1803 -0.6497 6 7 2.8809 -1.8885 0.7098 7 6 2.7668 -3.0654 1.5814 8 6 3.4044 -4.2531 0.9078 9 8 3.9050 -4.1311 -0.1901 10 7 3.4182 -5.4510 1.5255 11 6 4.0376 -6.6057 0.8704 12 6 5.4946 -6.6763 1.2488 13 1 5.9170 -5.9353 1.9114 14 6 6.2886 -7.6868 0.7492 15 7 5.7742 -8.5894 -0.0573 16 14 8.0944 -7.7746 1.2189 17 1 8.4236 -6.6507 2.1319 18 1 8.3658 -9.0644 1.9029 19 1 8.9295 -7.6782 -0.0053 20 6 2.8140 -5.5983 2.8518 21 6 1.3401 -5.9800 2.7012 22 6 0.7327 -6.1275 4.0339 23 7 0.2651 -6.2426 5.0629 24 6 2.0645 -0.7673 1.2235 25 1 -0.3634 0.4810 0.9081 26 1 -0.3634 0.5460 -0.8706 27 1 -0.3634 -1.0270 -0.0376 28 1 3.1494 1.4201 -0.0375 29 1 1.6739 1.9653 -0.8706 30 1 1.7348 1.9427 0.9082 31 1 1.3102 -0.8259 -2.0101 32 1 2.9789 -0.3107 -1.6047 33 1 3.1105 -2.6935 -1.2489 34 1 1.4433 -2.7696 -0.5918 35 1 3.2734 -2.8683 2.5262 36 1 1.7143 -3.2767 1.7707 37 1 3.5345 -7.5181 1.1905 38 1 3.9478 -6.5015 -0.2109 39 1 6.3326 -9.3005 -0.4085 40 1 3.3368 -6.3788 3.4047 41 1 2.8916 -4.6553 3.3932 42 1 0.8172 -5.1995 2.1484 43 1 1.2624 -6.9229 2.1598 44 1 1.2323 -1.1532 1.8124 45 1 2.6804 -0.1102 1.8375 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072827400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:33 Heat of formation + Delta-G solvation = -26.422128 kcal Electronic energy + Delta-G solvation = -24106.399678 eV Core-core repulsion = 20737.079241 eV Total energy + Delta-G solvation = -3369.320437 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20796 -39.78846 -37.98113 -36.69221 -35.14585 -34.71721 -32.15658 -31.05065 -29.69630 -28.15803 -27.99415 -25.57500 -25.30501 -24.12707 -22.25755 -20.23806 -19.64351 -18.75912 -18.32259 -17.88048 -17.25205 -16.53882 -16.36960 -16.13148 -15.80063 -15.52803 -15.03938 -14.80856 -14.56578 -14.40720 -14.31973 -14.04290 -13.85572 -13.64115 -13.54850 -13.26019 -13.21685 -12.96071 -12.73727 -12.65565 -12.55520 -12.49064 -12.32536 -12.25471 -12.15118 -11.82564 -11.63215 -11.53292 -11.43420 -11.32005 -10.58081 -10.30066 -9.47024 -9.21597 -8.17130 -6.28891 1.39256 1.42229 1.52565 1.67911 1.82740 1.91098 2.25661 2.44723 3.04771 3.14656 3.21249 3.64322 3.73709 3.89548 3.99318 4.05858 4.11391 4.29893 4.38879 4.45030 4.48948 4.55250 4.58731 4.73296 4.82730 4.85914 4.89353 4.96750 5.02786 5.04718 5.12331 5.15101 5.18744 5.29919 5.35218 5.37274 5.43513 5.55323 5.64547 5.89550 6.00029 6.11820 6.14927 6.59316 6.77686 6.84106 7.36771 7.57514 8.89604 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.004507 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.590849 B = 6211.177528 C = 7792.854559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.074 4.074 3 C -0.132 4.132 4 C -0.113 4.113 5 C 0.037 3.963 6 N -0.523 5.523 7 C 0.035 3.965 8 C 0.500 3.500 9 O -0.569 6.569 10 N -0.599 5.599 11 C 0.262 3.738 12 C -0.538 4.538 13 H 0.052 0.948 14 C 0.012 3.988 15 N -0.926 5.926 16 Si 0.957 3.043 17 H -0.269 1.269 18 H -0.273 1.273 19 H -0.285 1.285 20 C 0.113 3.887 21 C -0.037 4.037 22 C 0.246 3.754 23 N -0.488 5.488 24 C 0.043 3.957 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.034 0.966 38 H 0.004 0.996 39 H 0.265 0.735 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.133 0.867 43 H 0.120 0.880 44 H 0.060 0.940 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.486 16.126 2.975 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.075 4.075 3 C -0.189 4.189 4 C -0.151 4.151 5 C -0.090 4.090 6 N -0.248 5.248 7 C -0.096 4.096 8 C 0.289 3.711 9 O -0.448 6.448 10 N -0.330 5.330 11 C 0.141 3.859 12 C -0.577 4.577 13 H 0.070 0.930 14 C -0.187 4.187 15 N -0.566 5.566 16 Si 0.782 3.218 17 H -0.193 1.193 18 H -0.198 1.198 19 H -0.211 1.211 20 C -0.011 4.011 21 C -0.078 4.078 22 C -0.072 4.072 23 N -0.166 5.166 24 C -0.084 4.084 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.135 0.865 36 H 0.110 0.890 37 H 0.052 0.948 38 H 0.022 0.978 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.151 0.849 43 H 0.138 0.862 44 H 0.079 0.921 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.323 15.978 3.843 20.541 hybrid contribution 0.673 -0.961 -0.442 1.254 sum -11.650 15.017 3.401 19.308 Atomic orbital electron populations 1.21870 0.92822 1.01738 1.02697 1.21422 0.96288 0.95934 0.93856 1.21816 1.00528 0.94160 1.02417 1.22651 1.00928 0.94155 0.97416 1.23284 0.97847 0.97201 0.90699 1.64591 1.52451 1.05403 1.02394 1.22340 1.01197 0.88445 0.97571 1.21083 0.79776 0.84530 0.85698 1.90623 1.47333 1.84173 1.22693 1.48082 1.56283 1.09822 1.18808 1.18775 0.91633 0.83195 0.92343 1.21783 0.96236 1.10878 1.28753 0.93004 1.25701 1.02750 0.95353 0.94921 1.70026 1.37657 1.15545 1.33374 0.85527 0.80112 0.78180 0.77954 1.19343 1.19828 1.21138 1.21514 0.90968 1.04541 0.84117 1.19816 0.95067 1.07156 0.85737 1.29123 0.92217 0.91451 0.94365 1.81257 1.11118 1.10893 1.13294 1.23157 0.95705 0.92592 0.96948 0.91420 0.91761 0.93132 0.93325 0.91967 0.91516 0.90202 0.91813 0.90987 0.94377 0.86456 0.89042 0.94818 0.97824 0.92621 0.89770 0.87702 0.84945 0.86187 0.92138 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.21 71.98 0.59 -1.19 16 2 C -0.07 -1.27 0.97 -51.30 -0.05 -1.32 16 3 C -0.13 -1.95 8.24 71.98 0.59 -1.35 16 4 C -0.11 -2.47 6.16 31.80 0.20 -2.27 16 5 C 0.04 1.05 5.30 86.65 0.46 1.51 16 6 N -0.52 -14.02 5.26 -887.54 -4.67 -18.69 16 7 C 0.04 0.88 4.07 85.56 0.35 1.23 16 8 C 0.50 18.21 7.38 87.66 0.65 18.86 16 9 O -0.57 -26.81 13.10 -3.04 -0.04 -26.85 16 10 N -0.60 -21.42 2.46 -826.17 -2.03 -23.45 16 11 C 0.26 12.63 5.16 85.63 0.44 13.07 16 12 C -0.54 -29.23 9.39 25.60 0.24 -28.99 16 13 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 14 C 0.01 0.65 5.46 84.66 0.46 1.12 16 15 N -0.93 -53.86 13.29 21.45 0.28 -53.57 16 16 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 20 C 0.11 2.75 5.17 86.38 0.45 3.20 16 21 C -0.04 -0.66 6.03 28.79 0.17 -0.48 16 22 C 0.25 5.25 15.43 89.44 1.38 6.63 16 23 N -0.49 -13.32 18.54 20.01 0.37 -12.95 16 24 C 0.04 0.82 6.02 86.45 0.52 1.34 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.84 8.11 -2.39 -0.02 0.82 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.08 1.51 7.85 -2.39 -0.02 1.49 16 32 H 0.06 1.51 7.85 -2.38 -0.02 1.49 16 33 H 0.07 2.69 5.97 -2.39 -0.01 2.67 16 34 H 0.04 1.02 8.02 -2.39 -0.02 1.00 16 35 H 0.12 2.52 7.40 -2.38 -0.02 2.50 16 36 H 0.09 1.63 6.85 -2.39 -0.02 1.61 16 37 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 38 H 0.00 0.21 7.42 -2.39 -0.02 0.19 16 39 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.08 2.26 8.07 -2.39 -0.02 2.24 16 41 H 0.10 1.95 6.44 -2.38 -0.02 1.93 16 42 H 0.13 1.70 7.22 -2.38 -0.02 1.68 16 43 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.06 0.94 7.11 -2.39 -0.02 0.93 16 45 H 0.08 1.50 7.69 -2.39 -0.02 1.49 16 Total: -1.00 -72.39 365.53 3.36 -69.03 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.96 Total: 9.02 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.45 Total: 11.35 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -6.04 Total: -108.66 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.04 Total: -26.85 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -72.39 3.36 -69.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072827400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.612 kcal (2) G-P(sol) polarization free energy of solvation -72.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds