Wall clock time and date at job start Tue Mar 31 2020 06:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42895 * 109.47560 * 2 1 4 4 C 1.42899 * 114.00075 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47558 * 30.00298 * 4 3 2 6 6 C 1.52999 * 109.46952 * 150.00223 * 4 3 2 7 7 C 1.50697 * 109.47132 * 294.99940 * 6 4 3 8 8 O 1.21293 * 119.99916 * 0.02562 * 7 6 4 9 9 N 1.34784 * 120.00059 * 179.97438 * 7 6 4 10 10 C 1.37093 * 119.99909 * 179.97438 * 9 7 6 11 11 H 1.08001 * 120.00086 * 224.28527 * 10 9 7 12 12 C 1.38954 * 119.99886 * 44.29213 * 10 9 7 13 13 N 1.31405 * 120.00080 * 18.20928 * 12 10 9 14 14 Si 1.86799 * 119.99758 * 198.20464 * 12 10 9 15 15 H 1.48503 * 109.47040 * 90.00112 * 14 12 10 16 16 H 1.48501 * 109.47152 * 209.99815 * 14 12 10 17 17 H 1.48494 * 109.47315 * 330.00104 * 14 12 10 18 18 C 1.46496 * 119.99846 * 0.02562 * 9 7 6 19 19 C 1.53000 * 117.49926 * 183.22222 * 18 9 7 20 20 C 1.53003 * 117.49760 * 114.59908 * 18 9 7 21 21 C 1.50700 * 109.47350 * 269.99949 * 4 3 2 22 22 C 1.30529 * 124.44804 * 125.02326 * 21 4 3 23 23 C 1.51096 * 111.10517 * 179.73546 * 22 21 4 24 24 C 1.54631 * 104.72690 * 16.44278 * 23 22 21 25 25 C 1.51103 * 124.44851 * 304.72740 * 21 4 3 26 26 H 1.09000 * 109.47209 * 300.00050 * 1 2 3 27 27 H 1.09003 * 109.47443 * 59.99791 * 1 2 3 28 28 H 1.09002 * 109.47687 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47209 * 239.99950 * 2 1 3 30 30 H 1.09007 * 109.47057 * 120.00488 * 2 1 3 31 31 H 1.09007 * 109.47434 * 55.00297 * 6 4 3 32 32 H 1.09000 * 109.47152 * 174.99877 * 6 4 3 33 33 H 0.97001 * 120.00035 * 174.93900 * 13 12 10 34 34 H 1.09004 * 115.55343 * 328.93400 * 18 9 7 35 35 H 1.08994 * 117.49809 * 0.02562 * 19 18 9 36 36 H 1.08998 * 117.49877 * 145.02385 * 19 18 9 37 37 H 1.08997 * 117.50261 * 214.97366 * 20 18 9 38 38 H 1.09003 * 117.49961 * 359.97438 * 20 18 9 39 39 H 1.08004 * 124.44265 * 359.71904 * 22 21 4 40 40 H 1.09001 * 110.38526 * 135.24881 * 23 22 21 41 41 H 1.08994 * 110.39283 * 257.62627 * 23 22 21 42 42 H 1.08994 * 111.04228 * 93.39744 * 24 23 22 43 43 H 1.09004 * 111.03512 * 217.33794 * 24 23 22 44 44 H 1.08997 * 110.38636 * 282.63527 * 25 21 4 45 45 H 1.09000 * 110.38911 * 45.01747 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 1 3.8631 0.6016 -0.5147 6 6 3.8404 2.7457 -0.7218 7 6 3.4471 2.6543 -2.1736 8 8 2.8933 1.6589 -2.5905 9 7 3.7098 3.6791 -3.0088 10 6 3.3525 3.5957 -4.3297 11 1 4.0440 3.9108 -5.0971 12 6 2.1005 3.1060 -4.6812 13 7 1.1384 3.0597 -3.7873 14 14 1.7851 2.5134 -6.4244 15 1 2.1036 1.0661 -6.5205 16 1 0.3573 2.7301 -6.7702 17 1 2.6437 3.2729 -7.3683 18 6 4.3782 4.8815 -2.5052 19 6 4.5807 6.0396 -3.4843 20 6 5.7759 5.1913 -3.0450 21 6 3.9323 1.4994 1.4200 22 6 4.8280 0.6859 1.9097 23 6 5.1113 0.9983 3.3606 24 6 3.9270 1.8850 3.8103 25 6 3.4688 2.4898 2.4628 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.3373 3.5963 -0.2619 32 1 4.9197 2.8772 -0.6453 33 1 0.2452 2.7874 -4.0498 34 1 4.1738 5.1319 -1.4642 35 1 4.2163 5.9071 -4.5029 36 1 4.5095 7.0523 -3.0875 37 1 6.4909 5.6460 -2.3594 38 1 6.1983 4.5002 -3.7745 39 1 5.3039 -0.1065 1.3511 40 1 5.1425 0.0803 3.9475 41 1 6.0508 1.5427 3.4555 42 1 3.1361 1.2838 4.2585 43 1 4.2600 2.6644 4.4958 44 1 3.9403 3.4592 2.3018 45 1 2.3833 2.5859 2.4394 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073051205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:34 Heat of formation + Delta-G solvation = -32.030302 kcal Electronic energy + Delta-G solvation = -24830.116340 eV Core-core repulsion = 21428.259962 eV Total energy + Delta-G solvation = -3401.856377 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.24376 -38.22826 -36.90863 -35.81360 -32.85108 -32.07415 -30.79460 -29.76855 -28.63204 -27.76549 -24.95899 -22.70826 -22.27618 -21.63448 -21.06033 -20.60700 -18.96834 -18.06965 -16.55448 -16.23442 -15.97087 -15.60787 -15.14023 -14.63856 -14.38751 -14.25771 -13.82034 -13.46768 -13.24583 -12.67136 -12.65600 -12.41424 -12.06028 -11.92086 -11.70436 -11.51795 -11.30704 -11.17736 -11.02782 -10.99721 -10.96864 -10.83156 -10.79150 -10.65565 -10.41618 -10.17781 -10.05167 -9.88480 -9.65861 -8.93347 -8.66402 -8.56638 -7.84776 -6.90619 -5.98959 -3.75495 2.30817 3.35459 3.41968 3.44990 4.20521 4.28046 4.40311 4.67979 4.75548 4.87393 4.96840 5.06290 5.26986 5.38507 5.49191 5.56072 5.57141 5.64035 5.71120 5.76540 5.77110 5.81939 5.84512 5.90500 5.91600 5.96758 6.02923 6.07773 6.13297 6.22648 6.26717 6.30044 6.41509 6.42689 6.52733 6.56065 6.61158 6.72223 6.83100 6.99405 7.02078 7.71047 7.92486 8.38237 9.18270 9.29397 9.78711 10.43995 11.08913 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.005592 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.451710 B = 5005.556315 C = 6356.044523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 O -0.353 6.353 4 C 0.160 3.840 5 H 0.067 0.933 6 C -0.128 4.128 7 C 0.490 3.510 8 O -0.525 6.525 9 N -0.432 5.432 10 C -0.350 4.350 11 H 0.074 0.926 12 C 0.075 3.925 13 N -0.825 5.825 14 Si 0.908 3.092 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.078 3.922 19 C -0.175 4.175 20 C -0.210 4.210 21 C -0.139 4.139 22 C -0.176 4.176 23 C -0.095 4.095 24 C -0.125 4.125 25 C -0.090 4.090 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.262 0.738 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.512 -1.152 12.401 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.009 4.009 3 O -0.272 6.272 4 C 0.101 3.899 5 H 0.085 0.915 6 C -0.168 4.168 7 C 0.277 3.723 8 O -0.402 6.402 9 N -0.154 5.154 10 C -0.477 4.477 11 H 0.092 0.908 12 C -0.136 4.136 13 N -0.458 5.458 14 Si 0.736 3.264 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.200 1.200 18 C -0.029 4.029 19 C -0.212 4.212 20 C -0.249 4.249 21 C -0.140 4.140 22 C -0.194 4.194 23 C -0.132 4.132 24 C -0.163 4.163 25 C -0.127 4.127 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.138 0.862 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.872 -1.642 12.235 13.271 hybrid contribution 0.007 -0.323 -0.830 0.891 sum 4.879 -1.965 11.404 12.559 Atomic orbital electron populations 1.21669 0.94489 1.01163 1.03010 1.22285 0.95053 0.84644 0.98917 1.87981 1.19303 1.25437 1.94454 1.20346 0.82404 0.98293 0.88872 0.91463 1.21714 1.01012 0.97821 0.96282 1.19620 0.82675 0.83827 0.86141 1.90506 1.41626 1.31154 1.76866 1.42760 1.53835 1.10128 1.08649 1.18780 0.99135 1.48459 0.81353 0.90828 1.25212 0.95071 0.95718 0.97575 1.69855 1.00773 1.41338 1.33839 0.86292 0.77037 0.79637 0.83484 1.20499 1.21413 1.20044 1.21676 0.94946 0.90362 0.95906 1.23042 1.01858 0.94398 1.01920 1.23310 0.92214 1.04586 1.04766 1.22740 0.97556 0.96845 0.96837 1.23115 0.99743 0.99997 0.96561 1.21285 0.98597 0.99375 0.93908 1.22448 0.97793 0.98908 0.97111 1.21211 1.01786 0.97726 0.91956 0.92701 0.91274 0.92100 0.93214 0.95029 0.90044 0.89890 0.92794 0.88180 0.87549 0.89943 0.89945 0.89217 0.86152 0.91642 0.91034 0.91428 0.91260 0.90770 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 10.28 37.15 0.38 -2.00 16 2 C 0.07 1.23 6.46 37.15 0.24 1.47 16 3 O -0.35 -7.35 9.19 -49.66 -0.46 -7.81 16 4 C 0.16 2.99 2.05 -27.88 -0.06 2.93 16 5 H 0.07 1.33 7.52 -51.93 -0.39 0.94 16 6 C -0.13 -2.54 3.97 -27.88 -0.11 -2.65 16 7 C 0.49 12.52 6.85 -10.98 -0.08 12.45 16 8 O -0.52 -15.31 13.18 -8.88 -0.12 -15.43 16 9 N -0.43 -10.97 2.83 -107.73 -0.31 -11.28 16 10 C -0.35 -9.70 7.92 -14.93 -0.12 -9.81 16 11 H 0.07 1.99 7.26 -52.49 -0.38 1.61 16 12 C 0.08 2.14 4.38 -17.47 -0.08 2.07 16 13 N -0.83 -24.80 11.74 55.50 0.65 -24.15 16 14 Si 0.91 22.28 29.59 -169.99 -5.03 17.25 16 15 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 C 0.08 1.59 5.87 -67.93 -0.40 1.19 16 19 C -0.17 -3.23 9.80 -26.73 -0.26 -3.49 16 20 C -0.21 -3.65 10.36 -26.73 -0.28 -3.92 16 21 C -0.14 -2.10 5.03 -100.74 -0.51 -2.61 16 22 C -0.18 -2.32 10.55 -35.70 -0.38 -2.70 16 23 C -0.09 -1.02 6.81 -26.83 -0.18 -1.20 16 24 C -0.13 -1.35 7.19 -25.01 -0.18 -1.53 16 25 C -0.09 -1.20 6.69 -26.82 -0.18 -1.38 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 30 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.08 1.59 7.57 -51.93 -0.39 1.20 16 32 H 0.08 1.46 8.11 -51.93 -0.42 1.03 16 33 H 0.26 7.59 8.32 -40.82 -0.34 7.25 16 34 H 0.10 1.85 6.96 -51.93 -0.36 1.49 16 35 H 0.11 2.18 6.72 -51.93 -0.35 1.83 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 39 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -32.84 366.51 -9.68 -42.52 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.77 Total: 4.55 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.18 Total: -11.18 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.35 Total: -35.43 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.57 Total: -23.23 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.84 -9.68 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073051205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.489 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds