Wall clock time and date at job start Tue Mar 31 2020 06:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42895 * 109.47560 * 2 1 4 4 C 1.42899 * 114.00075 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47558 * 30.00298 * 4 3 2 6 6 C 1.52999 * 109.46952 * 150.00223 * 4 3 2 7 7 C 1.50697 * 109.47132 * 294.99940 * 6 4 3 8 8 O 1.21293 * 119.99916 * 0.02562 * 7 6 4 9 9 N 1.34784 * 120.00059 * 179.97438 * 7 6 4 10 10 C 1.37093 * 119.99909 * 179.97438 * 9 7 6 11 11 H 1.08001 * 120.00086 * 224.28527 * 10 9 7 12 12 C 1.38954 * 119.99886 * 44.29213 * 10 9 7 13 13 N 1.31405 * 120.00080 * 18.20928 * 12 10 9 14 14 Si 1.86799 * 119.99758 * 198.20464 * 12 10 9 15 15 H 1.48503 * 109.47040 * 90.00112 * 14 12 10 16 16 H 1.48501 * 109.47152 * 209.99815 * 14 12 10 17 17 H 1.48494 * 109.47315 * 330.00104 * 14 12 10 18 18 C 1.46496 * 119.99846 * 0.02562 * 9 7 6 19 19 C 1.53000 * 117.49926 * 183.22222 * 18 9 7 20 20 C 1.53003 * 117.49760 * 114.59908 * 18 9 7 21 21 C 1.50700 * 109.47350 * 269.99949 * 4 3 2 22 22 C 1.30529 * 124.44804 * 125.02326 * 21 4 3 23 23 C 1.51096 * 111.10517 * 179.73546 * 22 21 4 24 24 C 1.54631 * 104.72690 * 16.44278 * 23 22 21 25 25 C 1.51103 * 124.44851 * 304.72740 * 21 4 3 26 26 H 1.09000 * 109.47209 * 300.00050 * 1 2 3 27 27 H 1.09003 * 109.47443 * 59.99791 * 1 2 3 28 28 H 1.09002 * 109.47687 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47209 * 239.99950 * 2 1 3 30 30 H 1.09007 * 109.47057 * 120.00488 * 2 1 3 31 31 H 1.09007 * 109.47434 * 55.00297 * 6 4 3 32 32 H 1.09000 * 109.47152 * 174.99877 * 6 4 3 33 33 H 0.97001 * 120.00035 * 174.93900 * 13 12 10 34 34 H 1.09004 * 115.55343 * 328.93400 * 18 9 7 35 35 H 1.08994 * 117.49809 * 0.02562 * 19 18 9 36 36 H 1.08998 * 117.49877 * 145.02385 * 19 18 9 37 37 H 1.08997 * 117.50261 * 214.97366 * 20 18 9 38 38 H 1.09003 * 117.49961 * 359.97438 * 20 18 9 39 39 H 1.08004 * 124.44265 * 359.71904 * 22 21 4 40 40 H 1.09001 * 110.38526 * 135.24881 * 23 22 21 41 41 H 1.08994 * 110.39283 * 257.62627 * 23 22 21 42 42 H 1.08994 * 111.04228 * 93.39744 * 24 23 22 43 43 H 1.09004 * 111.03512 * 217.33794 * 24 23 22 44 44 H 1.08997 * 110.38636 * 282.63527 * 25 21 4 45 45 H 1.09000 * 110.38911 * 45.01747 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 1 3.8631 0.6016 -0.5147 6 6 3.8404 2.7457 -0.7218 7 6 3.4471 2.6543 -2.1736 8 8 2.8933 1.6589 -2.5905 9 7 3.7098 3.6791 -3.0088 10 6 3.3525 3.5957 -4.3297 11 1 4.0440 3.9108 -5.0971 12 6 2.1005 3.1060 -4.6812 13 7 1.1384 3.0597 -3.7873 14 14 1.7851 2.5134 -6.4244 15 1 2.1036 1.0661 -6.5205 16 1 0.3573 2.7301 -6.7702 17 1 2.6437 3.2729 -7.3683 18 6 4.3782 4.8815 -2.5052 19 6 4.5807 6.0396 -3.4843 20 6 5.7759 5.1913 -3.0450 21 6 3.9323 1.4994 1.4200 22 6 4.8280 0.6859 1.9097 23 6 5.1113 0.9983 3.3606 24 6 3.9270 1.8850 3.8103 25 6 3.4688 2.4898 2.4628 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.3373 3.5963 -0.2619 32 1 4.9197 2.8772 -0.6453 33 1 0.2452 2.7874 -4.0498 34 1 4.1738 5.1319 -1.4642 35 1 4.2163 5.9071 -4.5029 36 1 4.5095 7.0523 -3.0875 37 1 6.4909 5.6460 -2.3594 38 1 6.1983 4.5002 -3.7745 39 1 5.3039 -0.1065 1.3511 40 1 5.1425 0.0803 3.9475 41 1 6.0508 1.5427 3.4555 42 1 3.1361 1.2838 4.2585 43 1 4.2600 2.6644 4.4958 44 1 3.9403 3.4592 2.3018 45 1 2.3833 2.5859 2.4394 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073051205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:33 Heat of formation + Delta-G solvation = -50.058337 kcal Electronic energy + Delta-G solvation = -24830.898094 eV Core-core repulsion = 21428.259962 eV Total energy + Delta-G solvation = -3402.638132 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.72460 -39.75388 -38.25057 -37.53958 -34.80019 -33.61737 -32.70987 -31.17906 -29.82672 -28.88133 -26.86482 -24.24921 -23.68102 -23.08351 -22.70597 -21.62658 -20.80496 -19.29855 -18.16356 -17.77287 -17.74050 -17.05523 -16.54096 -16.18221 -16.02059 -15.72513 -15.53797 -15.06812 -14.83402 -14.35447 -13.91328 -13.62635 -13.50003 -13.35550 -13.12234 -12.94714 -12.89374 -12.74683 -12.54762 -12.45158 -12.37602 -12.18641 -12.06079 -11.99586 -11.97906 -11.88520 -11.62059 -11.58518 -11.18419 -10.69255 -10.38398 -9.87244 -9.63760 -8.89950 -8.13270 -5.92519 1.20960 1.34545 1.42523 1.47288 2.29310 2.47369 2.88529 3.13588 3.19060 3.41120 3.66214 3.75851 4.10027 4.10353 4.13670 4.18576 4.22675 4.26450 4.32002 4.40837 4.47340 4.47556 4.53590 4.60067 4.69843 4.84951 4.89699 4.90370 4.93969 4.97298 5.05029 5.07257 5.07729 5.10790 5.22888 5.26702 5.31878 5.42712 5.48256 5.52589 5.65014 5.91905 6.24595 6.49273 7.09950 7.29096 7.77806 8.46108 8.93969 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.005592 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.451710 B = 5005.556315 C = 6356.044523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.067 3.933 3 O -0.383 6.383 4 C 0.162 3.838 5 H 0.045 0.955 6 C -0.112 4.112 7 C 0.472 3.528 8 O -0.574 6.574 9 N -0.449 5.449 10 C -0.356 4.356 11 H 0.074 0.926 12 C 0.024 3.976 13 N -0.864 5.864 14 Si 0.965 3.035 15 H -0.293 1.293 16 H -0.282 1.282 17 H -0.255 1.255 18 C 0.044 3.956 19 C -0.172 4.172 20 C -0.179 4.179 21 C -0.164 4.164 22 C -0.158 4.158 23 C -0.092 4.092 24 C -0.118 4.118 25 C -0.089 4.089 26 H 0.067 0.933 27 H 0.033 0.967 28 H 0.091 0.909 29 H 0.022 0.978 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.256 0.744 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.073 0.927 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.506 -0.387 14.502 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.009 4.009 3 O -0.303 6.303 4 C 0.104 3.896 5 H 0.063 0.937 6 C -0.152 4.152 7 C 0.262 3.738 8 O -0.455 6.455 9 N -0.170 5.170 10 C -0.484 4.484 11 H 0.091 0.909 12 C -0.183 4.183 13 N -0.498 5.498 14 Si 0.790 3.210 15 H -0.220 1.220 16 H -0.208 1.208 17 H -0.179 1.179 18 C -0.061 4.061 19 C -0.209 4.209 20 C -0.217 4.217 21 C -0.165 4.165 22 C -0.176 4.176 23 C -0.128 4.128 24 C -0.155 4.155 25 C -0.127 4.127 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.110 0.890 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.092 0.908 39 H 0.141 0.859 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.905 -0.830 14.328 15.927 hybrid contribution -0.502 -0.560 -1.493 1.672 sum 6.403 -1.390 12.835 14.411 Atomic orbital electron populations 1.21656 0.93277 1.02854 1.01834 1.22363 0.96074 0.83759 0.98721 1.87928 1.20719 1.26879 1.94730 1.20289 0.81531 0.96621 0.91182 0.93668 1.21616 1.02445 0.98814 0.92365 1.20591 0.81748 0.83191 0.88310 1.90464 1.43718 1.33008 1.78276 1.43007 1.53933 1.11943 1.08151 1.19015 0.98817 1.47625 0.82924 0.90859 1.26003 0.95146 0.96013 1.01118 1.69981 1.00845 1.43343 1.35679 0.85399 0.77437 0.78227 0.79899 1.21967 1.20792 1.17866 1.21984 0.97213 0.89552 0.97348 1.23091 1.02179 0.95590 1.00082 1.23316 0.91370 1.03009 1.04026 1.22459 0.99513 0.99293 0.95213 1.23450 0.97683 0.98411 0.98039 1.21348 0.99218 1.00424 0.91859 1.22454 0.97824 0.99393 0.95852 1.21220 1.00679 0.97763 0.92990 0.91359 0.94773 0.88999 0.95988 0.92407 0.89687 0.87299 0.93514 0.86120 0.90230 0.86578 0.85684 0.90814 0.85865 0.89834 0.89304 0.91177 0.89103 0.90306 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 10.28 71.98 0.74 -3.90 16 2 C 0.07 2.53 6.46 71.98 0.46 2.99 16 3 O -0.38 -16.60 9.19 -135.18 -1.24 -17.84 16 4 C 0.16 6.21 2.05 29.85 0.06 6.27 16 5 H 0.05 1.88 7.52 -2.39 -0.02 1.86 16 6 C -0.11 -4.51 3.97 29.85 0.12 -4.39 16 7 C 0.47 24.94 6.85 87.65 0.60 25.54 16 8 O -0.57 -35.32 13.18 10.73 0.14 -35.18 16 9 N -0.45 -23.22 2.83 -613.12 -1.74 -24.95 16 10 C -0.36 -20.22 7.92 84.04 0.67 -19.56 16 11 H 0.07 4.04 7.26 -2.91 -0.02 4.02 16 12 C 0.02 1.40 4.38 84.93 0.37 1.77 16 13 N -0.86 -54.33 11.74 21.66 0.25 -54.07 16 14 Si 0.96 47.23 29.59 68.60 2.03 49.26 16 15 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 16 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.25 -11.46 7.11 99.48 0.71 -10.76 16 18 C 0.04 1.75 5.87 44.99 0.26 2.02 16 19 C -0.17 -6.05 9.80 30.60 0.30 -5.75 16 20 C -0.18 -5.73 10.36 30.60 0.32 -5.42 16 21 C -0.16 -4.77 5.03 -15.87 -0.08 -4.85 16 22 C -0.16 -3.79 10.55 26.26 0.28 -3.51 16 23 C -0.09 -1.61 6.81 30.53 0.21 -1.40 16 24 C -0.12 -2.14 7.19 31.71 0.23 -1.91 16 25 C -0.09 -2.23 6.69 30.53 0.20 -2.03 16 26 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.02 0.92 8.08 -2.39 -0.02 0.90 16 30 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.08 3.32 7.57 -2.38 -0.02 3.31 16 32 H 0.11 3.71 8.11 -2.39 -0.02 3.69 16 33 H 0.26 15.62 8.32 -92.71 -0.77 14.85 16 34 H 0.12 4.24 6.96 -2.39 -0.02 4.22 16 35 H 0.08 3.24 6.72 -2.39 -0.02 3.23 16 36 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -75.92 366.51 5.13 -70.79 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.95 Total: 26.12 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 4.74 Total: -14.12 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -1.48 Total: -79.02 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -1.10 Total: -53.02 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -75.92 5.13 -70.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073051205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.732 kcal (2) G-P(sol) polarization free energy of solvation -75.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds