Wall clock time and date at job start Tue Mar 31 2020 06:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46899 * 109.47447 * 2 1 4 4 C 1.46902 * 110.99582 * 68.70041 * 3 2 1 5 5 C 1.50705 * 109.47006 * 71.35753 * 4 3 2 6 6 H 1.07997 * 120.00181 * 5.07333 * 5 4 3 7 7 C 1.37875 * 119.99855 * 185.07841 * 5 4 3 8 8 N 1.31515 * 120.00369 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 120.00092 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47114 * 90.00065 * 9 7 5 11 11 H 1.48493 * 109.47259 * 210.00379 * 9 7 5 12 12 H 1.48498 * 109.47015 * 330.00543 * 9 7 5 13 13 C 1.46900 * 111.00178 * 304.74711 * 3 2 1 14 14 C 1.53003 * 109.46931 * 287.05603 * 13 3 2 15 15 H 1.09005 * 109.46900 * 304.06738 * 14 13 3 16 16 O 1.42894 * 109.47157 * 64.06947 * 14 13 3 17 17 C 1.53002 * 109.46610 * 184.07138 * 14 13 3 18 18 O 1.42905 * 109.46792 * 174.99789 * 17 14 13 19 19 C 1.35895 * 117.00018 * 180.02562 * 18 17 14 20 20 C 1.38733 * 120.05541 * 180.02562 * 19 18 17 21 21 C 1.38149 * 119.94152 * 180.02562 * 20 19 18 22 22 C 1.38265 * 120.05868 * 0.27372 * 21 20 19 23 23 C 1.50693 * 119.94533 * 179.70686 * 22 21 20 24 24 C 1.38277 * 120.10594 * 359.44765 * 22 21 20 25 25 C 1.38135 * 120.05804 * 0.55252 * 24 22 21 26 26 H 1.09001 * 109.46954 * 65.18453 * 1 2 3 27 27 H 1.08998 * 109.47606 * 185.18951 * 1 2 3 28 28 H 1.09005 * 109.47308 * 305.18646 * 1 2 3 29 29 H 1.09003 * 109.47013 * 239.99826 * 2 1 3 30 30 H 1.08997 * 109.47143 * 120.00781 * 2 1 3 31 31 H 1.09001 * 109.47045 * 191.35487 * 4 3 2 32 32 H 1.08994 * 109.47276 * 311.35571 * 4 3 2 33 33 H 0.97001 * 120.00519 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46802 * 167.05178 * 13 3 2 35 35 H 1.09006 * 109.46885 * 47.05428 * 13 3 2 36 36 H 0.96699 * 113.99954 * 59.99987 * 16 14 13 37 37 H 1.08997 * 109.47205 * 55.00108 * 17 14 13 38 38 H 1.08994 * 109.46994 * 294.99620 * 17 14 13 39 39 H 1.07990 * 120.02886 * 359.97438 * 20 19 18 40 40 H 1.07995 * 119.96886 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47586 * 89.99950 * 23 22 21 42 42 H 1.09007 * 109.46601 * 210.00146 * 23 22 21 43 43 H 1.09001 * 109.46886 * 329.99468 * 23 22 21 44 44 H 1.08001 * 119.96373 * 180.25804 * 24 22 21 45 45 H 1.08004 * 120.03250 * 179.74500 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7255 2.0473 1.2778 5 6 2.6104 1.4755 2.3554 6 1 3.3759 0.7575 2.1010 7 6 2.4425 1.8689 3.6661 8 7 3.2143 1.3696 4.6067 9 14 1.1186 3.1113 4.1061 10 1 -0.1457 2.3977 4.4188 11 1 1.5501 3.8959 5.2907 12 1 0.8988 4.0278 2.9586 13 6 1.4583 2.1419 -1.1269 14 6 2.1186 1.6833 -2.4287 15 1 3.2000 1.7913 -2.3452 16 8 1.7939 0.3129 -2.6704 17 6 1.6084 2.5407 -3.5887 18 8 2.3099 2.1911 -4.7837 19 6 1.9748 2.8649 -5.9153 20 6 2.6155 2.5761 -7.1114 21 6 2.2733 3.2628 -8.2602 22 6 1.2974 4.2413 -8.2175 23 6 0.9308 4.9934 -9.4708 24 6 0.6533 4.5270 -7.0277 25 6 0.9917 3.8431 -5.8762 26 1 -0.3633 0.4313 -0.9328 27 1 -0.3634 -1.0234 0.0929 28 1 -0.3634 0.5922 0.8399 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.9122 3.1171 1.1840 32 1 0.6805 1.8825 1.5403 33 1 3.0964 1.6467 5.5287 34 1 1.6457 3.2055 -0.9793 35 1 0.3839 1.9666 -1.1830 36 1 0.8459 0.1424 -2.7558 37 1 1.7766 3.5938 -3.3636 38 1 0.5419 2.3648 -3.7288 39 1 3.3815 1.8156 -7.1443 40 1 2.7721 3.0386 -9.1915 41 1 0.1262 4.4697 -9.9867 42 1 0.6003 5.9984 -9.2078 43 1 1.8010 5.0565 -10.1242 44 1 -0.1116 5.2888 -6.9978 45 1 0.4913 4.0695 -4.9462 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081513645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:07 Heat of formation + Delta-G solvation = -58.878674 kcal Electronic energy + Delta-G solvation = -23282.488170 eV Core-core repulsion = 19879.467560 eV Total energy + Delta-G solvation = -3403.020610 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37975 -38.76126 -37.60408 -35.71277 -32.51636 -32.34836 -31.33062 -30.90974 -29.50740 -27.70713 -26.39946 -24.89511 -23.30957 -22.68739 -21.52197 -21.19315 -19.46429 -18.24335 -16.92760 -16.66507 -16.58319 -15.66452 -15.41933 -15.35723 -15.06032 -14.60448 -14.23239 -14.08670 -13.78832 -13.71807 -13.57961 -13.14255 -13.09776 -12.54039 -12.35943 -12.27313 -11.99087 -11.77634 -11.66068 -11.35238 -11.23943 -11.07106 -10.97818 -10.78024 -10.68282 -10.64884 -10.29782 -9.87252 -9.39963 -9.23965 -9.22068 -8.57733 -8.22967 -7.33937 -6.05222 -4.01897 1.10845 1.20288 2.97486 3.25090 3.33427 3.34033 3.52123 4.40091 4.42151 4.46267 4.59463 4.62534 4.71941 4.89806 4.94368 5.08205 5.11917 5.17380 5.24745 5.26932 5.30705 5.40120 5.44007 5.48267 5.64228 5.70849 5.80880 5.83291 5.88654 6.03855 6.06480 6.14679 6.21246 6.36601 6.38897 6.48062 6.57357 6.85894 6.93740 7.07769 7.27100 7.61638 7.72716 7.89961 8.05727 8.66540 9.06283 9.56653 11.08148 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028538 B = 0.002722 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.929382 B =10285.574706 C =10687.111270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.043 3.957 3 N -0.516 5.516 4 C 0.158 3.842 5 C -0.505 4.505 6 H 0.081 0.919 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.019 3.981 14 C 0.118 3.882 15 H 0.117 0.883 16 O -0.542 6.542 17 C 0.029 3.971 18 O -0.301 6.301 19 C 0.129 3.871 20 C -0.150 4.150 21 C -0.081 4.081 22 C -0.133 4.133 23 C -0.108 4.108 24 C -0.080 4.080 25 C -0.208 4.208 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.022 0.978 32 H -0.010 1.010 33 H 0.263 0.737 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.365 0.635 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.122 0.878 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.436 5.258 -25.266 26.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.084 4.084 3 N -0.239 5.239 4 C 0.032 3.968 5 C -0.543 4.543 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.110 4.110 14 C 0.059 3.941 15 H 0.135 0.865 16 O -0.346 6.346 17 C -0.047 4.047 18 O -0.214 6.214 19 C 0.084 3.916 20 C -0.169 4.169 21 C -0.099 4.099 22 C -0.133 4.133 23 C -0.165 4.165 24 C -0.098 4.098 25 C -0.227 4.227 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.040 0.960 32 H 0.008 0.992 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.212 0.788 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.140 0.860 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.081 5.045 -25.035 26.252 hybrid contribution -2.468 1.095 0.697 2.789 sum -8.549 6.141 -24.338 26.517 Atomic orbital electron populations 1.22410 1.00144 1.01438 1.00605 1.22386 0.91293 0.90876 1.03887 1.62074 1.57442 1.01931 1.02427 1.20264 0.94912 0.94457 0.87129 1.21026 1.17593 1.25887 0.89833 0.90055 1.24908 0.95976 0.96141 0.96394 1.69892 1.39160 1.43959 1.00907 0.86883 0.82506 0.82169 0.78253 1.20416 1.21161 1.19411 1.22708 0.96780 0.99228 0.92324 1.22022 1.02121 0.80643 0.89361 0.86541 1.86672 1.28615 1.25241 1.94083 1.23679 0.96209 1.00619 0.84238 1.86170 1.60738 1.59235 1.15301 1.19115 0.93887 0.91573 0.87068 1.20467 1.02780 1.03289 0.90322 1.20841 0.96664 0.94927 0.97501 1.19816 0.98686 0.99119 0.95665 1.20703 1.01694 0.99352 0.94727 1.20818 0.98651 0.98690 0.91690 1.21285 1.01354 1.00101 0.99949 0.93983 0.92844 0.92542 0.89256 0.89977 0.95957 0.99231 0.92691 0.90568 0.94466 0.78803 0.91062 0.91999 0.85091 0.85509 0.91547 0.91807 0.91728 0.85976 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.97 9.15 37.15 0.34 -2.63 16 2 C 0.04 0.81 5.48 -3.83 -0.02 0.79 16 3 N -0.52 -10.38 4.61 -236.07 -1.09 -11.47 16 4 C 0.16 3.75 3.69 -4.97 -0.02 3.73 16 5 C -0.50 -14.28 8.94 -34.44 -0.31 -14.59 16 6 H 0.08 2.54 7.93 -52.49 -0.42 2.12 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 9 Si 0.87 21.36 27.37 -169.99 -4.65 16.71 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.29 6.69 56.52 0.38 -5.91 16 13 C 0.02 0.29 4.58 -3.82 -0.02 0.27 16 14 C 0.12 1.62 3.47 -26.73 -0.09 1.53 16 15 H 0.12 1.81 8.14 -51.93 -0.42 1.39 16 16 O -0.54 -7.59 10.23 -40.08 -0.41 -8.00 16 17 C 0.03 0.33 4.37 37.16 0.16 0.49 16 18 O -0.30 -3.97 10.10 -24.26 -0.25 -4.22 16 19 C 0.13 1.55 6.69 -39.21 -0.26 1.28 16 20 C -0.15 -1.62 9.99 -39.43 -0.39 -2.01 16 21 C -0.08 -0.74 9.69 -39.60 -0.38 -1.12 16 22 C -0.13 -1.17 5.88 -104.60 -0.62 -1.79 16 23 C -0.11 -0.67 10.01 36.00 0.36 -0.31 16 24 C -0.08 -0.74 9.69 -39.60 -0.38 -1.13 16 25 C -0.21 -2.18 9.04 -39.43 -0.36 -2.54 16 26 H 0.04 0.56 5.64 -51.93 -0.29 0.26 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.01 6.26 -51.93 -0.33 0.69 16 29 H 0.09 1.56 5.53 -51.93 -0.29 1.27 16 30 H 0.08 1.78 7.18 -51.93 -0.37 1.41 16 31 H 0.02 0.54 7.14 -51.93 -0.37 0.16 16 32 H -0.01 -0.23 5.26 -51.93 -0.27 -0.51 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.08 1.15 7.71 -51.93 -0.40 0.75 16 35 H 0.04 0.53 5.66 -51.93 -0.29 0.23 16 36 H 0.37 3.97 8.30 45.56 0.38 4.34 16 37 H 0.07 0.74 7.66 -51.93 -0.40 0.34 16 38 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 39 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.35 8.09 -51.92 -0.42 -0.07 16 43 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.13 1.16 6.30 -52.48 -0.33 0.83 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -32.10 354.65 -8.68 -40.78 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.32 Total: 3.85 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -2.09 Total: -16.18 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.31 Total: -38.29 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.65 Total: -12.22 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.65 Total: 16.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.10 -8.68 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.101 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds