Wall clock time and date at job start Tue Mar 31 2020 06:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46899 * 109.47447 * 2 1 4 4 C 1.46902 * 110.99582 * 68.70041 * 3 2 1 5 5 C 1.50705 * 109.47006 * 71.35753 * 4 3 2 6 6 H 1.07997 * 120.00181 * 5.07333 * 5 4 3 7 7 C 1.37875 * 119.99855 * 185.07841 * 5 4 3 8 8 N 1.31515 * 120.00369 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 120.00092 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47114 * 90.00065 * 9 7 5 11 11 H 1.48493 * 109.47259 * 210.00379 * 9 7 5 12 12 H 1.48498 * 109.47015 * 330.00543 * 9 7 5 13 13 C 1.46900 * 111.00178 * 304.74711 * 3 2 1 14 14 C 1.53003 * 109.46931 * 287.05603 * 13 3 2 15 15 H 1.09005 * 109.46900 * 304.06738 * 14 13 3 16 16 O 1.42894 * 109.47157 * 64.06947 * 14 13 3 17 17 C 1.53002 * 109.46610 * 184.07138 * 14 13 3 18 18 O 1.42905 * 109.46792 * 174.99789 * 17 14 13 19 19 C 1.35895 * 117.00018 * 180.02562 * 18 17 14 20 20 C 1.38733 * 120.05541 * 180.02562 * 19 18 17 21 21 C 1.38149 * 119.94152 * 180.02562 * 20 19 18 22 22 C 1.38265 * 120.05868 * 0.27372 * 21 20 19 23 23 C 1.50693 * 119.94533 * 179.70686 * 22 21 20 24 24 C 1.38277 * 120.10594 * 359.44765 * 22 21 20 25 25 C 1.38135 * 120.05804 * 0.55252 * 24 22 21 26 26 H 1.09001 * 109.46954 * 65.18453 * 1 2 3 27 27 H 1.08998 * 109.47606 * 185.18951 * 1 2 3 28 28 H 1.09005 * 109.47308 * 305.18646 * 1 2 3 29 29 H 1.09003 * 109.47013 * 239.99826 * 2 1 3 30 30 H 1.08997 * 109.47143 * 120.00781 * 2 1 3 31 31 H 1.09001 * 109.47045 * 191.35487 * 4 3 2 32 32 H 1.08994 * 109.47276 * 311.35571 * 4 3 2 33 33 H 0.97001 * 120.00519 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46802 * 167.05178 * 13 3 2 35 35 H 1.09006 * 109.46885 * 47.05428 * 13 3 2 36 36 H 0.96699 * 113.99954 * 59.99987 * 16 14 13 37 37 H 1.08997 * 109.47205 * 55.00108 * 17 14 13 38 38 H 1.08994 * 109.46994 * 294.99620 * 17 14 13 39 39 H 1.07990 * 120.02886 * 359.97438 * 20 19 18 40 40 H 1.07995 * 119.96886 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47586 * 89.99950 * 23 22 21 42 42 H 1.09007 * 109.46601 * 210.00146 * 23 22 21 43 43 H 1.09001 * 109.46886 * 329.99468 * 23 22 21 44 44 H 1.08001 * 119.96373 * 180.25804 * 24 22 21 45 45 H 1.08004 * 120.03250 * 179.74500 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7255 2.0473 1.2778 5 6 2.6104 1.4755 2.3554 6 1 3.3759 0.7575 2.1010 7 6 2.4425 1.8689 3.6661 8 7 3.2143 1.3696 4.6067 9 14 1.1186 3.1113 4.1061 10 1 -0.1457 2.3977 4.4188 11 1 1.5501 3.8959 5.2907 12 1 0.8988 4.0278 2.9586 13 6 1.4583 2.1419 -1.1269 14 6 2.1186 1.6833 -2.4287 15 1 3.2000 1.7913 -2.3452 16 8 1.7939 0.3129 -2.6704 17 6 1.6084 2.5407 -3.5887 18 8 2.3099 2.1911 -4.7837 19 6 1.9748 2.8649 -5.9153 20 6 2.6155 2.5761 -7.1114 21 6 2.2733 3.2628 -8.2602 22 6 1.2974 4.2413 -8.2175 23 6 0.9308 4.9934 -9.4708 24 6 0.6533 4.5270 -7.0277 25 6 0.9917 3.8431 -5.8762 26 1 -0.3633 0.4313 -0.9328 27 1 -0.3634 -1.0234 0.0929 28 1 -0.3634 0.5922 0.8399 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.9122 3.1171 1.1840 32 1 0.6805 1.8825 1.5403 33 1 3.0964 1.6467 5.5287 34 1 1.6457 3.2055 -0.9793 35 1 0.3839 1.9666 -1.1830 36 1 0.8459 0.1424 -2.7558 37 1 1.7766 3.5938 -3.3636 38 1 0.5419 2.3648 -3.7288 39 1 3.3815 1.8156 -7.1443 40 1 2.7721 3.0386 -9.1915 41 1 0.1262 4.4697 -9.9867 42 1 0.6003 5.9984 -9.2078 43 1 1.8010 5.0565 -10.1242 44 1 -0.1116 5.2888 -6.9978 45 1 0.4913 4.0695 -4.9462 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081513645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:06 Heat of formation + Delta-G solvation = -81.471079 kcal Electronic energy + Delta-G solvation = -23283.467850 eV Core-core repulsion = 19879.467560 eV Total energy + Delta-G solvation = -3404.000290 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.19793 -39.92157 -38.56568 -37.00707 -34.64451 -33.08072 -32.16221 -31.87468 -31.14267 -29.14725 -27.23347 -26.07491 -24.71806 -23.84280 -22.60295 -22.02682 -20.98245 -19.12485 -18.86077 -17.77619 -17.69722 -16.82123 -16.53764 -16.40323 -16.12204 -16.01417 -15.36579 -15.32471 -14.72662 -14.66170 -14.45170 -14.40830 -14.35950 -13.99600 -13.56985 -13.29445 -12.98334 -12.89691 -12.71574 -12.63779 -12.53507 -12.39589 -12.36722 -12.12338 -11.84000 -11.72502 -11.68034 -11.55745 -11.44066 -10.78031 -10.60153 -9.95444 -8.97934 -8.87833 -8.27441 -6.30221 0.39418 0.46830 1.32919 1.35254 1.46050 2.09504 2.34028 2.80177 3.06028 3.26686 3.44283 3.79585 3.93640 3.95384 4.01703 4.08919 4.11769 4.25395 4.27890 4.41209 4.45292 4.46763 4.51712 4.62244 4.65782 4.71139 4.77984 4.84977 4.89801 4.93193 5.09747 5.11758 5.19330 5.20087 5.28704 5.39037 5.41982 5.52506 5.60727 5.70007 5.89453 6.03059 6.44571 6.47754 6.69969 6.77159 6.83064 7.33113 8.89892 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028538 B = 0.002722 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.929382 B =10285.574706 C =10687.111270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.047 3.953 3 N -0.541 5.541 4 C 0.170 3.830 5 C -0.513 4.513 6 H 0.030 0.970 7 C 0.003 3.997 8 N -0.951 5.951 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.246 1.246 13 C 0.022 3.978 14 C 0.128 3.872 15 H 0.090 0.910 16 O -0.557 6.557 17 C 0.036 3.964 18 O -0.325 6.325 19 C 0.103 3.897 20 C -0.168 4.168 21 C -0.085 4.085 22 C -0.135 4.135 23 C -0.107 4.107 24 C -0.088 4.088 25 C -0.214 4.214 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.102 0.898 30 H 0.036 0.964 31 H 0.026 0.974 32 H -0.002 1.002 33 H 0.266 0.734 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.381 0.619 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.129 0.871 40 H 0.148 0.852 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.144 0.856 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.286 7.272 -27.659 30.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.080 4.080 3 N -0.264 5.264 4 C 0.043 3.957 5 C -0.551 4.551 6 H 0.048 0.952 7 C -0.194 4.194 8 N -0.593 5.593 9 Si 0.773 3.227 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.169 1.169 13 C -0.107 4.107 14 C 0.068 3.932 15 H 0.108 0.892 16 O -0.364 6.364 17 C -0.039 4.039 18 O -0.239 6.239 19 C 0.058 3.942 20 C -0.186 4.186 21 C -0.103 4.103 22 C -0.136 4.136 23 C -0.164 4.164 24 C -0.106 4.106 25 C -0.233 4.233 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.120 0.880 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.016 0.984 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.230 0.770 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.147 0.853 40 H 0.166 0.834 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.162 0.838 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.945 7.055 -27.469 29.738 hybrid contribution -1.485 0.382 1.322 2.024 sum -10.429 7.437 -26.148 29.117 Atomic orbital electron populations 1.22307 0.97411 1.02468 1.01474 1.22290 0.93551 0.89960 1.02216 1.61907 1.59258 1.02797 1.02415 1.19990 0.93908 0.94288 0.87539 1.21283 1.17160 1.24883 0.91789 0.95160 1.25908 0.98747 0.98565 0.96132 1.70068 1.41608 1.46085 1.01490 0.85680 0.79015 0.79439 0.78571 1.19277 1.20880 1.16938 1.22765 0.98035 0.98915 0.90950 1.21743 1.00593 0.81065 0.89799 0.89220 1.86633 1.30230 1.25460 1.94049 1.23551 0.97032 1.00394 0.82957 1.86109 1.61636 1.60106 1.16049 1.19348 0.95251 0.92721 0.86876 1.20676 1.03167 1.03908 0.90898 1.21140 0.96785 0.94640 0.97756 1.20218 0.97932 0.98709 0.96693 1.20758 1.02449 0.99531 0.93634 1.21157 0.99056 0.98910 0.91446 1.21480 1.01038 0.99779 1.01012 0.90578 0.91301 0.94511 0.88012 0.94539 0.95598 0.98437 0.92531 0.89924 0.92026 0.77006 0.89976 0.89736 0.85291 0.83391 0.90617 0.90873 0.90780 0.83831 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.27 9.15 71.98 0.66 -4.62 16 2 C 0.05 1.77 5.48 86.30 0.47 2.25 16 3 N -0.54 -21.68 4.61 -900.79 -4.15 -25.83 16 4 C 0.17 7.97 3.69 85.56 0.32 8.28 16 5 C -0.51 -30.10 8.94 25.60 0.23 -29.87 16 6 H 0.03 2.02 7.93 -2.91 -0.02 2.00 16 7 C 0.00 0.18 5.47 84.65 0.46 0.65 16 8 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 9 Si 0.95 43.91 27.37 68.60 1.88 45.79 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.25 -10.37 6.69 99.48 0.67 -9.71 16 13 C 0.02 0.63 4.58 86.30 0.40 1.02 16 14 C 0.13 3.35 3.47 30.60 0.11 3.46 16 15 H 0.09 2.83 8.14 -2.38 -0.02 2.81 16 16 O -0.56 -14.79 10.23 -144.35 -1.48 -16.27 16 17 C 0.04 0.75 4.37 71.98 0.31 1.07 16 18 O -0.32 -8.32 10.10 -87.73 -0.89 -9.21 16 19 C 0.10 2.37 6.69 22.51 0.15 2.52 16 20 C -0.17 -3.53 9.99 22.37 0.22 -3.31 16 21 C -0.09 -1.41 9.69 22.25 0.22 -1.20 16 22 C -0.14 -2.06 5.88 -19.85 -0.12 -2.18 16 23 C -0.11 -0.99 10.01 71.23 0.71 -0.28 16 24 C -0.09 -1.40 9.69 22.25 0.22 -1.19 16 25 C -0.21 -4.06 9.04 22.36 0.20 -3.86 16 26 H 0.08 1.72 5.64 -2.39 -0.01 1.71 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.24 6.26 -2.38 -0.01 1.22 16 29 H 0.10 3.53 5.53 -2.39 -0.01 3.51 16 30 H 0.04 1.66 7.18 -2.39 -0.02 1.65 16 31 H 0.03 1.20 7.14 -2.39 -0.02 1.18 16 32 H 0.00 -0.09 5.26 -2.39 -0.01 -0.10 16 33 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 34 H 0.08 2.28 7.71 -2.39 -0.02 2.26 16 35 H 0.06 1.49 5.66 -2.38 -0.01 1.48 16 36 H 0.38 7.20 8.30 -74.06 -0.62 6.58 16 37 H 0.08 1.51 7.66 -2.39 -0.02 1.49 16 38 H 0.08 1.36 7.66 -2.39 -0.02 1.34 16 39 H 0.13 2.60 8.06 -2.92 -0.02 2.58 16 40 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.56 8.09 -2.38 -0.02 0.54 16 43 H 0.07 0.56 8.08 -2.39 -0.02 0.54 16 44 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.14 2.16 6.30 -2.91 -0.02 2.14 16 Total: -1.00 -73.09 354.65 0.55 -72.54 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.33 Total: 20.44 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 4.56 Total: -27.26 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -3.85 Total: -86.03 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -2.36 Total: -25.48 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -73.09 0.55 -72.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.934 kcal (2) G-P(sol) polarization free energy of solvation -73.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds