Wall clock time and date at job start Tue Mar 31 2020 06:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46902 * 109.47380 * 2 1 4 4 C 1.46905 * 110.99735 * 298.49947 * 3 2 1 5 5 C 1.50697 * 109.47077 * 288.13155 * 4 3 2 6 6 H 1.07993 * 120.00151 * 4.27097 * 5 4 3 7 7 C 1.37879 * 120.00022 * 184.26744 * 5 4 3 8 8 N 1.31518 * 119.99727 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00349 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46952 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47398 * 119.99547 * 9 7 5 12 12 H 1.48505 * 109.47236 * 239.99819 * 9 7 5 13 13 C 1.46900 * 111.00207 * 62.45270 * 3 2 1 14 14 C 1.53001 * 109.47122 * 76.98543 * 13 3 2 15 15 H 1.09008 * 109.46848 * 53.09334 * 14 13 3 16 16 O 1.42903 * 109.47268 * 293.09936 * 14 13 3 17 17 C 1.52992 * 109.47241 * 173.09366 * 14 13 3 18 18 O 1.42904 * 109.47497 * 185.00213 * 17 14 13 19 19 C 1.35902 * 117.00320 * 180.02562 * 18 17 14 20 20 C 1.38729 * 120.05407 * 180.02562 * 19 18 17 21 21 C 1.38147 * 119.94281 * 179.97438 * 20 19 18 22 22 C 1.38260 * 120.05369 * 0.27377 * 21 20 19 23 23 C 1.50699 * 119.94273 * 179.72938 * 22 21 20 24 24 C 1.38273 * 120.11458 * 359.44663 * 22 21 20 25 25 C 1.38146 * 120.05079 * 0.55738 * 24 22 21 26 26 H 1.09000 * 109.47360 * 183.35497 * 1 2 3 27 27 H 1.09002 * 109.47410 * 303.35768 * 1 2 3 28 28 H 1.09006 * 109.46979 * 63.35190 * 1 2 3 29 29 H 1.09000 * 109.47211 * 240.00278 * 2 1 3 30 30 H 1.09003 * 109.47244 * 120.00025 * 2 1 3 31 31 H 1.08999 * 109.47352 * 48.13533 * 4 3 2 32 32 H 1.09004 * 109.46727 * 168.13149 * 4 3 2 33 33 H 0.97003 * 120.00000 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.46989 * 316.98727 * 13 3 2 35 35 H 1.08998 * 109.47384 * 196.98797 * 13 3 2 36 36 H 0.96703 * 113.99665 * 299.99501 * 16 14 13 37 37 H 1.09002 * 109.47218 * 65.00237 * 17 14 13 38 38 H 1.08999 * 109.47337 * 305.00038 * 17 14 13 39 39 H 1.08004 * 120.02989 * 359.95182 * 20 19 18 40 40 H 1.07994 * 119.97206 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47263 * 90.00155 * 23 22 21 42 42 H 1.09009 * 109.46856 * 209.99666 * 23 22 21 43 43 H 1.08997 * 109.47318 * 329.99246 * 23 22 21 44 44 H 1.07992 * 119.97418 * 180.25859 * 24 22 21 45 45 H 1.07999 * 120.02837 * 179.74612 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5782 2.0994 -1.2053 5 6 2.3371 1.5842 -2.4009 6 1 3.0231 0.7576 -2.2899 7 6 2.1555 2.1680 -3.6367 8 7 1.3196 3.1743 -3.7721 9 14 3.0956 1.5289 -5.1190 10 1 3.9650 0.3987 -4.7040 11 1 2.1351 1.0622 -6.1508 12 1 3.9346 2.6181 -5.6803 13 6 1.5972 2.0928 1.2159 14 6 2.4735 1.6551 2.3913 15 1 3.5239 1.7792 2.1273 16 8 2.2169 0.2817 2.6914 17 6 2.1505 2.5137 3.6157 18 8 3.0477 2.1849 4.6783 19 6 2.8948 2.8619 5.8467 20 6 3.7320 2.5934 6.9199 21 6 3.5748 3.2833 8.1064 22 6 2.5806 4.2365 8.2267 23 6 2.4075 4.9833 9.5242 24 6 1.7487 4.5101 7.1567 25 6 1.9017 3.8229 5.9681 26 1 -0.3634 -1.0259 0.0601 27 1 -0.3634 0.5651 0.8584 28 1 -0.3633 0.4609 -0.9186 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5109 1.9358 -1.3542 32 1 1.7690 3.1660 -1.0858 33 1 1.1915 3.5849 -4.6416 34 1 0.5554 1.8552 1.4312 35 1 1.7012 3.1673 1.0655 36 1 1.2995 0.0973 2.9353 37 1 1.1255 2.3226 3.9334 38 1 2.2611 3.5675 3.3599 39 1 4.5056 1.8454 6.8280 40 1 4.2259 3.0744 8.9423 41 1 3.0186 5.8857 9.5084 42 1 1.3596 5.2563 9.6492 43 1 2.7189 4.3480 10.3534 44 1 0.9756 5.2581 7.2518 45 1 1.2490 4.0339 5.1339 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:08 Heat of formation + Delta-G solvation = -63.800135 kcal Electronic energy + Delta-G solvation = -23184.691255 eV Core-core repulsion = 19781.457235 eV Total energy + Delta-G solvation = -3403.234021 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32350 -38.61798 -37.50222 -35.68002 -32.56854 -32.29947 -31.27972 -30.83006 -29.13047 -27.37138 -26.28042 -24.72673 -23.28347 -22.85515 -21.56297 -21.17125 -19.51789 -18.18564 -16.74772 -16.57207 -16.19054 -15.59573 -15.33240 -15.24458 -15.00732 -14.57570 -14.22979 -14.06534 -13.71926 -13.67491 -13.58291 -13.12129 -12.89579 -12.39815 -12.32883 -12.15782 -11.78326 -11.72937 -11.42921 -11.21601 -11.09197 -10.96079 -10.91755 -10.75309 -10.62227 -10.55977 -10.27890 -9.96381 -9.40603 -9.19637 -9.07602 -8.42601 -8.18435 -7.19232 -6.02449 -4.02603 1.15100 1.24636 3.03880 3.31507 3.39041 3.44757 3.56437 4.41883 4.50206 4.54573 4.64814 4.70734 4.77087 4.98195 5.00279 5.13555 5.18110 5.27194 5.32990 5.34675 5.35395 5.47001 5.52744 5.55751 5.68328 5.82529 5.85071 5.94801 6.04186 6.10745 6.16333 6.19595 6.30144 6.40561 6.52111 6.61690 6.68112 6.98614 7.27086 7.32778 7.39420 7.78686 7.82703 8.10084 8.22804 8.54874 9.05399 9.61308 11.08376 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029184 B = 0.002585 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.203829 B =10827.757860 C =11086.444733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.047 3.953 3 N -0.526 5.526 4 C 0.187 3.813 5 C -0.500 4.500 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.284 1.284 13 C 0.022 3.978 14 C 0.118 3.882 15 H 0.116 0.884 16 O -0.544 6.544 17 C 0.029 3.971 18 O -0.302 6.302 19 C 0.130 3.870 20 C -0.151 4.151 21 C -0.082 4.082 22 C -0.133 4.133 23 C -0.108 4.108 24 C -0.080 4.080 25 C -0.208 4.208 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.082 0.918 31 H -0.003 1.003 32 H 0.028 0.972 33 H 0.260 0.740 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.365 0.635 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.122 0.878 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 1.307 23.577 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.081 4.081 3 N -0.249 5.249 4 C 0.062 3.938 5 C -0.539 4.539 6 H 0.081 0.919 7 C -0.148 4.148 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.107 4.107 14 C 0.058 3.942 15 H 0.134 0.866 16 O -0.348 6.348 17 C -0.048 4.048 18 O -0.215 6.215 19 C 0.084 3.916 20 C -0.169 4.169 21 C -0.100 4.100 22 C -0.133 4.133 23 C -0.165 4.165 24 C -0.098 4.098 25 C -0.227 4.227 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.015 0.985 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.211 0.789 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.140 0.860 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.410 1.214 23.217 23.253 hybrid contribution -1.351 0.204 -0.937 1.656 sum -0.940 1.418 22.280 22.345 Atomic orbital electron populations 1.22407 0.99991 1.00669 1.01716 1.22294 0.91558 0.91312 1.02960 1.62218 1.59159 1.02058 1.01495 1.19864 0.94429 0.93701 0.85835 1.21193 1.24126 1.16667 0.91932 0.91856 1.24986 0.95617 0.95127 0.99035 1.69965 1.36412 1.23677 1.24084 0.86452 0.79708 0.78856 0.82484 1.19633 1.21186 1.21061 1.22666 0.96102 0.99622 0.92331 1.22073 1.02443 0.80398 0.89266 0.86639 1.86657 1.32625 1.25386 1.90141 1.23699 0.92839 1.00847 0.87375 1.86169 1.55858 1.59867 1.19622 1.19118 0.94392 0.91585 0.86514 1.20460 1.01353 1.03324 0.91783 1.20830 0.97208 0.95167 0.96763 1.19810 0.97692 0.99392 0.96450 1.20701 1.02134 0.99632 0.93986 1.20821 0.98501 0.98418 0.92081 1.21298 1.01228 1.00247 0.99886 0.93374 0.93896 0.91749 0.90732 0.89973 0.98485 0.95429 0.93060 0.94513 0.90579 0.78850 0.91998 0.91021 0.85139 0.85551 0.91532 0.91828 0.91775 0.85963 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 9.30 37.15 0.35 -2.88 16 2 C 0.05 0.89 5.71 -3.83 -0.02 0.87 16 3 N -0.53 -10.97 4.58 -236.07 -1.08 -12.05 16 4 C 0.19 4.73 4.58 -4.97 -0.02 4.71 16 5 C -0.50 -14.01 8.64 -34.44 -0.30 -14.31 16 6 H 0.06 1.78 7.36 -52.49 -0.39 1.40 16 7 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 13 C 0.02 0.36 4.68 -3.82 -0.02 0.35 16 14 C 0.12 1.70 3.46 -26.73 -0.09 1.61 16 15 H 0.12 1.89 8.14 -51.92 -0.42 1.47 16 16 O -0.54 -7.87 10.51 -40.08 -0.42 -8.29 16 17 C 0.03 0.34 4.37 37.15 0.16 0.51 16 18 O -0.30 -4.14 10.10 -24.28 -0.25 -4.39 16 19 C 0.13 1.61 6.69 -39.22 -0.26 1.35 16 20 C -0.15 -1.68 9.99 -39.43 -0.39 -2.08 16 21 C -0.08 -0.77 9.69 -39.61 -0.38 -1.15 16 22 C -0.13 -1.22 5.88 -104.60 -0.62 -1.84 16 23 C -0.11 -0.70 10.01 36.01 0.36 -0.34 16 24 C -0.08 -0.78 9.70 -39.60 -0.38 -1.16 16 25 C -0.21 -2.28 9.04 -39.43 -0.36 -2.64 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.65 6.01 -51.93 -0.31 0.34 16 28 H 0.06 1.28 6.37 -51.93 -0.33 0.95 16 29 H 0.07 1.58 7.15 -51.93 -0.37 1.21 16 30 H 0.08 1.43 5.43 -51.93 -0.28 1.15 16 31 H 0.00 -0.07 5.88 -51.93 -0.31 -0.37 16 32 H 0.03 0.75 7.67 -51.93 -0.40 0.35 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 34 H 0.04 0.56 5.67 -51.93 -0.29 0.27 16 35 H 0.08 1.26 7.62 -51.93 -0.40 0.86 16 36 H 0.37 4.06 9.05 45.56 0.41 4.47 16 37 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 38 H 0.07 0.80 7.66 -51.93 -0.40 0.40 16 39 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 40 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.36 8.09 -51.92 -0.42 -0.06 16 43 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -31.48 359.44 -8.99 -40.48 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.30 Total: 3.59 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -2.08 Total: -15.60 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.34 Total: -37.96 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.67 Total: -12.68 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.48 -8.99 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.323 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds