Wall clock time and date at job start Tue Mar 31 2020 06:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46902 * 109.47380 * 2 1 4 4 C 1.46905 * 110.99735 * 298.49947 * 3 2 1 5 5 C 1.50697 * 109.47077 * 288.13155 * 4 3 2 6 6 H 1.07993 * 120.00151 * 4.27097 * 5 4 3 7 7 C 1.37879 * 120.00022 * 184.26744 * 5 4 3 8 8 N 1.31518 * 119.99727 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00349 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46952 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47398 * 119.99547 * 9 7 5 12 12 H 1.48505 * 109.47236 * 239.99819 * 9 7 5 13 13 C 1.46900 * 111.00207 * 62.45270 * 3 2 1 14 14 C 1.53001 * 109.47122 * 76.98543 * 13 3 2 15 15 H 1.09008 * 109.46848 * 53.09334 * 14 13 3 16 16 O 1.42903 * 109.47268 * 293.09936 * 14 13 3 17 17 C 1.52992 * 109.47241 * 173.09366 * 14 13 3 18 18 O 1.42904 * 109.47497 * 185.00213 * 17 14 13 19 19 C 1.35902 * 117.00320 * 180.02562 * 18 17 14 20 20 C 1.38729 * 120.05407 * 180.02562 * 19 18 17 21 21 C 1.38147 * 119.94281 * 179.97438 * 20 19 18 22 22 C 1.38260 * 120.05369 * 0.27377 * 21 20 19 23 23 C 1.50699 * 119.94273 * 179.72938 * 22 21 20 24 24 C 1.38273 * 120.11458 * 359.44663 * 22 21 20 25 25 C 1.38146 * 120.05079 * 0.55738 * 24 22 21 26 26 H 1.09000 * 109.47360 * 183.35497 * 1 2 3 27 27 H 1.09002 * 109.47410 * 303.35768 * 1 2 3 28 28 H 1.09006 * 109.46979 * 63.35190 * 1 2 3 29 29 H 1.09000 * 109.47211 * 240.00278 * 2 1 3 30 30 H 1.09003 * 109.47244 * 120.00025 * 2 1 3 31 31 H 1.08999 * 109.47352 * 48.13533 * 4 3 2 32 32 H 1.09004 * 109.46727 * 168.13149 * 4 3 2 33 33 H 0.97003 * 120.00000 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.46989 * 316.98727 * 13 3 2 35 35 H 1.08998 * 109.47384 * 196.98797 * 13 3 2 36 36 H 0.96703 * 113.99665 * 299.99501 * 16 14 13 37 37 H 1.09002 * 109.47218 * 65.00237 * 17 14 13 38 38 H 1.08999 * 109.47337 * 305.00038 * 17 14 13 39 39 H 1.08004 * 120.02989 * 359.95182 * 20 19 18 40 40 H 1.07994 * 119.97206 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47263 * 90.00155 * 23 22 21 42 42 H 1.09009 * 109.46856 * 209.99666 * 23 22 21 43 43 H 1.08997 * 109.47318 * 329.99246 * 23 22 21 44 44 H 1.07992 * 119.97418 * 180.25859 * 24 22 21 45 45 H 1.07999 * 120.02837 * 179.74612 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5782 2.0994 -1.2053 5 6 2.3371 1.5842 -2.4009 6 1 3.0231 0.7576 -2.2899 7 6 2.1555 2.1680 -3.6367 8 7 1.3196 3.1743 -3.7721 9 14 3.0956 1.5289 -5.1190 10 1 3.9650 0.3987 -4.7040 11 1 2.1351 1.0622 -6.1508 12 1 3.9346 2.6181 -5.6803 13 6 1.5972 2.0928 1.2159 14 6 2.4735 1.6551 2.3913 15 1 3.5239 1.7792 2.1273 16 8 2.2169 0.2817 2.6914 17 6 2.1505 2.5137 3.6157 18 8 3.0477 2.1849 4.6783 19 6 2.8948 2.8619 5.8467 20 6 3.7320 2.5934 6.9199 21 6 3.5748 3.2833 8.1064 22 6 2.5806 4.2365 8.2267 23 6 2.4075 4.9833 9.5242 24 6 1.7487 4.5101 7.1567 25 6 1.9017 3.8229 5.9681 26 1 -0.3634 -1.0259 0.0601 27 1 -0.3634 0.5651 0.8584 28 1 -0.3633 0.4609 -0.9186 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5109 1.9358 -1.3542 32 1 1.7690 3.1660 -1.0858 33 1 1.1915 3.5849 -4.6416 34 1 0.5554 1.8552 1.4312 35 1 1.7012 3.1673 1.0655 36 1 1.2995 0.0973 2.9353 37 1 1.1255 2.3226 3.9334 38 1 2.2611 3.5675 3.3599 39 1 4.5056 1.8454 6.8280 40 1 4.2259 3.0744 8.9423 41 1 3.0186 5.8857 9.5084 42 1 1.3596 5.2563 9.6492 43 1 2.7189 4.3480 10.3534 44 1 0.9756 5.2581 7.2518 45 1 1.2490 4.0339 5.1339 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:08 Heat of formation + Delta-G solvation = -84.829746 kcal Electronic energy + Delta-G solvation = -23185.603168 eV Core-core repulsion = 19781.457235 eV Total energy + Delta-G solvation = -3404.145933 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19233 -39.83135 -38.55131 -37.03999 -34.67284 -33.07386 -32.16013 -31.87402 -30.73118 -28.91378 -27.19639 -26.03664 -24.97904 -23.92448 -22.65867 -22.03291 -21.07749 -19.09722 -18.37135 -17.77496 -17.68199 -16.84231 -16.51227 -16.44502 -16.14475 -15.92641 -15.37529 -15.27733 -14.84058 -14.63232 -14.40994 -14.39825 -14.14810 -13.96421 -13.42639 -13.12355 -12.98126 -12.89790 -12.73286 -12.64061 -12.59397 -12.39892 -12.39370 -12.09486 -11.96265 -11.74917 -11.69135 -11.56733 -11.34029 -10.62152 -10.57357 -9.95607 -8.98258 -8.86912 -8.19423 -6.27806 0.39192 0.46656 1.39023 1.40139 1.53489 2.08824 2.40901 2.80009 3.12235 3.34662 3.43659 3.80591 3.93225 3.96577 4.01640 4.09053 4.11753 4.24731 4.28175 4.41704 4.45443 4.46529 4.51712 4.62868 4.70541 4.77475 4.85007 4.90016 4.93813 5.04363 5.10791 5.13585 5.19597 5.29557 5.38304 5.38954 5.42088 5.54860 5.69811 5.70217 5.89422 6.10167 6.43832 6.45757 6.68961 6.82807 6.88438 7.41081 8.90907 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029184 B = 0.002585 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.203829 B =10827.757860 C =11086.444733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 N -0.542 5.542 4 C 0.203 3.797 5 C -0.517 4.517 6 H 0.055 0.945 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.964 3.036 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.025 3.975 14 C 0.132 3.868 15 H 0.091 0.909 16 O -0.556 6.556 17 C 0.037 3.963 18 O -0.323 6.323 19 C 0.102 3.898 20 C -0.166 4.166 21 C -0.085 4.085 22 C -0.135 4.135 23 C -0.107 4.107 24 C -0.088 4.088 25 C -0.216 4.216 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.029 0.971 29 H 0.045 0.955 30 H 0.104 0.896 31 H -0.020 1.020 32 H 0.001 0.999 33 H 0.263 0.737 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.382 0.618 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.150 0.850 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.143 0.857 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 1.183 25.431 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.078 4.078 3 N -0.265 5.265 4 C 0.076 3.924 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.204 1.204 13 C -0.104 4.104 14 C 0.072 3.928 15 H 0.109 0.891 16 O -0.362 6.362 17 C -0.039 4.039 18 O -0.237 6.237 19 C 0.057 3.943 20 C -0.185 4.185 21 C -0.102 4.102 22 C -0.135 4.135 23 C -0.163 4.163 24 C -0.106 4.106 25 C -0.235 4.235 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.122 0.878 31 H -0.002 1.002 32 H 0.019 0.981 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.231 0.769 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.161 0.839 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.092 1.081 25.101 25.124 hybrid contribution -1.260 0.247 -1.385 1.889 sum -1.169 1.328 23.715 23.781 Atomic orbital electron populations 1.22287 0.98278 1.02331 1.00827 1.22287 0.92969 0.90039 1.02524 1.62086 1.59967 1.02925 1.01522 1.19491 0.93043 0.92440 0.87378 1.21494 1.24204 1.16538 0.93357 0.92648 1.25841 0.96490 0.95296 1.02006 1.70073 1.37696 1.24768 1.24965 0.85404 0.78461 0.78391 0.78786 1.19145 1.20363 1.20414 1.22699 0.97597 0.98976 0.91114 1.21710 1.00509 0.80979 0.89612 0.89072 1.86609 1.34274 1.25225 1.90133 1.23536 0.93670 1.00426 0.86271 1.86103 1.56598 1.60701 1.20347 1.19362 0.95790 0.92751 0.86365 1.20680 1.01524 1.03935 0.92360 1.21148 0.97574 0.94749 0.96769 1.20220 0.96906 0.98940 0.97447 1.20759 1.03037 0.99785 0.92764 1.21151 0.99097 0.98600 0.91751 1.21477 1.01072 1.00110 1.00816 0.90802 0.91698 0.95204 0.93635 0.87820 1.00224 0.98095 0.92784 0.92574 0.91077 0.76914 0.89847 0.90403 0.85121 0.83227 0.90727 0.90859 0.90620 0.83919 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.92 9.30 71.98 0.67 -5.25 16 2 C 0.05 1.87 5.71 86.30 0.49 2.36 16 3 N -0.54 -22.94 4.58 -900.78 -4.12 -27.07 16 4 C 0.20 10.63 4.58 85.55 0.39 11.02 16 5 C -0.52 -29.75 8.64 25.60 0.22 -29.53 16 6 H 0.06 3.20 7.36 -2.91 -0.02 3.18 16 7 C 0.00 0.07 5.46 84.65 0.46 0.54 16 8 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 9 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.02 0.81 4.68 86.30 0.40 1.21 16 14 C 0.13 3.73 3.46 30.59 0.11 3.83 16 15 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 16 O -0.56 -15.26 10.51 -144.35 -1.52 -16.78 16 17 C 0.04 0.85 4.37 71.98 0.31 1.16 16 18 O -0.32 -8.75 10.10 -87.82 -0.89 -9.64 16 19 C 0.10 2.48 6.69 22.50 0.15 2.64 16 20 C -0.17 -3.62 9.99 22.37 0.22 -3.40 16 21 C -0.08 -1.45 9.69 22.25 0.22 -1.24 16 22 C -0.13 -2.18 5.88 -19.85 -0.12 -2.30 16 23 C -0.11 -1.07 10.01 71.24 0.71 -0.36 16 24 C -0.09 -1.53 9.70 22.26 0.22 -1.32 16 25 C -0.22 -4.47 9.04 22.37 0.20 -4.27 16 26 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 1.84 6.01 -2.39 -0.01 1.82 16 28 H 0.03 1.19 6.37 -2.38 -0.02 1.17 16 29 H 0.05 1.96 7.15 -2.39 -0.02 1.95 16 30 H 0.10 3.48 5.43 -2.39 -0.01 3.46 16 31 H -0.02 -1.09 5.88 -2.39 -0.01 -1.11 16 32 H 0.00 0.05 7.67 -2.39 -0.02 0.03 16 33 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.06 1.61 5.67 -2.39 -0.01 1.60 16 35 H 0.07 2.38 7.62 -2.39 -0.02 2.36 16 36 H 0.38 7.53 9.05 -74.06 -0.67 6.86 16 37 H 0.08 1.55 7.66 -2.39 -0.02 1.54 16 38 H 0.08 1.68 7.66 -2.39 -0.02 1.66 16 39 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 40 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.61 8.09 -2.38 -0.02 0.59 16 43 H 0.07 0.60 8.08 -2.39 -0.02 0.58 16 44 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.14 2.45 6.30 -2.91 -0.02 2.43 16 Total: -1.00 -69.21 359.44 0.76 -68.45 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.31 Total: 18.75 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 4.67 Total: -24.89 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -3.84 Total: -83.05 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -2.40 Total: -26.42 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.21 0.76 -68.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.382 kcal (2) G-P(sol) polarization free energy of solvation -69.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds