Wall clock time and date at job start Tue Mar 31 2020 06:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46855 * 2 1 4 4 C 1.35997 * 116.99775 * 180.02562 * 3 2 1 5 5 C 1.38568 * 120.07033 * 359.96044 * 4 3 2 6 6 C 1.38243 * 119.99690 * 180.02562 * 5 4 3 7 7 C 1.38257 * 120.14794 * 0.02562 * 6 5 4 8 8 C 1.38241 * 120.14302 * 0.02562 * 7 6 5 9 9 C 1.38558 * 120.00478 * 359.97438 * 8 7 6 10 10 O 1.35995 * 120.07806 * 180.02562 * 9 8 7 11 11 C 1.42898 * 116.99694 * 0.02562 * 10 9 8 12 12 C 1.53003 * 109.46847 * 179.97438 * 11 10 9 13 13 N 1.46890 * 109.47286 * 64.99820 * 12 11 10 14 14 C 1.46901 * 111.00351 * 66.04793 * 13 12 11 15 15 C 1.53001 * 109.47302 * 61.26781 * 14 13 12 16 16 C 1.46909 * 111.00270 * 189.99937 * 13 12 11 17 17 C 1.50694 * 109.47379 * 168.76018 * 16 13 12 18 18 H 1.08007 * 119.99929 * 355.02867 * 17 16 13 19 19 C 1.37875 * 119.99932 * 175.02042 * 17 16 13 20 20 N 1.31516 * 120.00079 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99893 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47217 * 90.00339 * 21 19 17 23 23 H 1.48501 * 109.46977 * 210.00681 * 21 19 17 24 24 H 1.48503 * 109.47062 * 329.99974 * 21 19 17 25 25 H 1.08999 * 109.47677 * 59.99569 * 1 2 3 26 26 H 1.09001 * 109.47424 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47162 * 299.99862 * 1 2 3 28 28 H 1.08995 * 109.46716 * 240.00579 * 2 1 3 29 29 H 1.08995 * 109.47196 * 120.00491 * 2 1 3 30 30 H 1.07999 * 120.00320 * 0.04343 * 5 4 3 31 31 H 1.07999 * 119.93148 * 180.27128 * 6 5 4 32 32 H 1.08002 * 119.92778 * 179.97438 * 7 6 5 33 33 H 1.08003 * 119.99824 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.46874 * 299.99224 * 11 10 9 35 35 H 1.08993 * 109.47303 * 59.99909 * 11 10 9 36 36 H 1.09003 * 109.46981 * 185.00139 * 12 11 10 37 37 H 1.09003 * 109.46989 * 304.99392 * 12 11 10 38 38 H 1.08998 * 109.47700 * 181.27369 * 14 13 12 39 39 H 1.09005 * 109.46642 * 301.27213 * 14 13 12 40 40 H 1.09001 * 109.47248 * 179.43434 * 15 14 13 41 41 H 1.09002 * 109.47058 * 299.43924 * 15 14 13 42 42 H 1.09003 * 109.46615 * 59.43277 * 15 14 13 43 43 H 1.08995 * 109.46658 * 288.76628 * 16 13 12 44 44 H 1.09000 * 109.46333 * 48.76039 * 16 13 12 45 45 H 0.96996 * 119.99869 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.1999 0.4276 -0.0002 6 6 5.5702 0.6105 -0.0003 7 6 6.1003 1.8875 0.0000 8 6 5.2624 2.9870 0.0007 9 6 3.8880 2.8107 0.0007 10 8 3.0623 3.8913 0.0010 11 6 3.6802 5.1798 0.0006 12 6 2.5999 6.2634 0.0003 13 7 1.8397 6.1972 1.2554 14 6 2.6866 6.5486 2.4031 15 6 3.1940 7.9830 2.2424 16 6 0.6500 7.0571 1.1963 17 6 -0.2439 6.7594 2.3724 18 1 0.0020 5.9527 3.0471 19 6 -1.3757 7.5170 2.5871 20 7 -1.6754 8.4991 1.7653 21 14 -2.4835 7.1484 4.0454 22 1 -2.0341 7.9374 5.2204 23 1 -3.8828 7.5146 3.7091 24 1 -2.4144 5.7000 4.3659 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.7884 -0.5709 -0.0003 31 1 6.2282 -0.2459 -0.0044 32 1 7.1714 2.0262 0.0004 33 1 5.6790 3.9834 0.0005 34 1 4.3008 5.2854 0.8904 35 1 4.3002 5.2852 -0.8895 36 1 3.0684 7.2435 -0.0896 37 1 1.9260 6.1043 -0.8416 38 1 2.1050 6.4697 3.3216 39 1 3.5353 5.8662 2.4507 40 1 3.8143 8.2472 3.0989 41 1 3.7841 8.0595 1.3291 42 1 2.3451 8.6643 2.1846 43 1 0.9558 8.1029 1.2278 44 1 0.1084 6.8646 0.2702 45 1 -2.4719 9.0317 1.9162 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088401864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:19 Heat of formation + Delta-G solvation = -44.180850 kcal Electronic energy + Delta-G solvation = -23856.447510 eV Core-core repulsion = 20454.064245 eV Total energy + Delta-G solvation = -3402.383265 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40200 -38.58151 -37.30743 -36.45071 -32.61850 -31.90293 -30.57604 -30.08628 -29.20937 -28.51807 -25.91325 -24.23907 -23.43471 -22.40146 -22.19341 -21.07274 -19.04737 -18.61374 -17.21954 -16.24863 -16.19660 -15.99395 -15.72356 -15.07180 -14.78852 -14.62860 -14.45406 -13.99344 -13.85332 -13.13122 -13.01034 -12.84535 -12.61109 -12.52019 -12.00395 -11.91178 -11.84504 -11.61874 -11.53892 -11.14365 -11.05004 -10.97761 -10.91553 -10.73011 -10.58005 -10.53413 -10.32753 -10.00372 -9.62896 -9.12395 -8.71632 -8.36781 -7.66023 -7.07925 -5.96056 -3.96002 1.30771 1.50382 3.27255 3.35922 3.41992 3.47626 3.47793 3.77467 4.48069 4.75985 4.87998 4.91290 4.94763 4.99618 5.07104 5.19517 5.26092 5.39079 5.39680 5.42755 5.46400 5.57242 5.63398 5.71500 5.79104 5.82395 5.92394 6.02714 6.10668 6.19447 6.22684 6.28095 6.33216 6.45458 6.48889 6.71549 6.72737 6.93061 7.29345 7.39176 7.48002 7.82242 7.89586 8.18379 8.27639 8.63631 9.12320 9.67643 11.14758 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.004219 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.614543 B = 6635.753889 C = 8054.752593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.297 6.297 4 C 0.100 3.900 5 C -0.177 4.177 6 C -0.129 4.129 7 C -0.119 4.119 8 C -0.182 4.182 9 C 0.113 3.887 10 O -0.277 6.277 11 C 0.065 3.935 12 C 0.050 3.950 13 N -0.525 5.525 14 C 0.058 3.942 15 C -0.190 4.190 16 C 0.189 3.811 17 C -0.500 4.500 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.901 5.901 21 Si 0.895 3.105 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.002 0.998 44 H 0.025 0.975 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.084 -14.386 -4.826 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.210 6.210 4 C 0.054 3.946 5 C -0.196 4.196 6 C -0.147 4.147 7 C -0.138 4.138 8 C -0.201 4.201 9 C 0.066 3.934 10 O -0.189 6.189 11 C -0.010 4.010 12 C -0.078 4.078 13 N -0.249 5.249 14 C -0.070 4.070 15 C -0.249 4.249 16 C 0.064 3.936 17 C -0.539 4.539 18 H 0.081 0.919 19 C -0.146 4.146 20 N -0.541 5.541 21 Si 0.723 3.277 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.020 0.980 44 H 0.043 0.957 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.380 -14.577 -4.800 20.361 hybrid contribution -0.019 0.627 0.652 0.905 sum 13.361 -13.950 -4.148 19.757 Atomic orbital electron populations 1.21762 0.92638 1.02378 1.04227 1.22748 0.96182 0.82386 1.00670 1.86295 1.17846 1.28304 1.88590 1.18291 0.83331 0.91248 1.01720 1.21024 0.94094 0.97265 1.07214 1.20748 0.94152 0.97134 1.02701 1.20797 0.99365 0.92013 1.01583 1.21093 0.91390 1.00244 1.07332 1.18451 0.89202 0.86248 0.99509 1.86404 1.32837 1.12216 1.87461 1.22987 0.96392 0.81579 1.00076 1.22116 0.95617 0.94183 0.95921 1.62318 1.07039 1.55692 0.99868 1.22012 0.95827 0.92668 0.96516 1.22415 1.01526 1.00827 1.00145 1.19789 0.85924 0.90072 0.97817 1.21158 1.06999 1.15308 1.10394 0.91928 1.24966 0.97800 0.95163 0.96700 1.69958 1.26585 1.20304 1.37294 0.86538 0.79808 0.78703 0.82632 1.20844 1.21339 1.19772 0.91366 0.90735 0.91059 0.92543 0.92411 0.85220 0.86065 0.86011 0.85012 0.92182 0.92764 0.93257 0.90367 0.89988 0.93219 0.93415 0.93837 0.91179 0.98001 0.95690 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 37.16 0.38 -1.25 16 2 C 0.06 0.64 5.46 37.16 0.20 0.84 16 3 O -0.30 -4.85 9.92 -34.23 -0.34 -5.19 16 4 C 0.10 1.54 6.70 -39.12 -0.26 1.27 16 5 C -0.18 -2.14 9.04 -39.46 -0.36 -2.49 16 6 C -0.13 -1.39 10.04 -39.57 -0.40 -1.79 16 7 C -0.12 -1.32 10.04 -39.57 -0.40 -1.72 16 8 C -0.18 -2.36 9.04 -39.46 -0.36 -2.72 16 9 C 0.11 1.81 6.70 -39.12 -0.26 1.55 16 10 O -0.28 -5.10 9.87 -34.22 -0.34 -5.44 16 11 C 0.07 1.02 4.80 37.16 0.18 1.20 16 12 C 0.05 0.92 5.12 -3.83 -0.02 0.90 16 13 N -0.53 -11.63 4.64 -236.07 -1.10 -12.73 16 14 C 0.06 1.15 5.68 -3.82 -0.02 1.13 16 15 C -0.19 -3.39 9.26 37.16 0.34 -3.04 16 16 C 0.19 4.97 4.54 -4.97 -0.02 4.95 16 17 C -0.50 -14.32 8.39 -34.44 -0.29 -14.61 16 18 H 0.06 1.81 7.39 -52.48 -0.39 1.42 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 21 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 29 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 30 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.13 1.48 6.30 -52.48 -0.33 1.15 16 34 H 0.06 0.88 5.83 -51.93 -0.30 0.58 16 35 H 0.05 0.69 7.66 -51.93 -0.40 0.30 16 36 H 0.05 0.83 6.05 -51.93 -0.31 0.52 16 37 H 0.08 1.49 7.92 -51.93 -0.41 1.08 16 38 H 0.08 1.78 6.98 -51.93 -0.36 1.42 16 39 H 0.05 0.88 6.32 -51.93 -0.33 0.55 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.69 6.33 -51.93 -0.33 0.36 16 42 H 0.07 1.45 6.29 -51.93 -0.33 1.13 16 43 H 0.00 0.06 6.02 -51.93 -0.31 -0.25 16 44 H 0.03 0.71 7.91 -51.93 -0.41 0.30 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 358.73 15.07 5.41 5.41 Total: -1.00 -32.57 358.73 -9.04 -41.61 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.01 Total: -0.10 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -1.37 Total: -14.31 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: -0.36 Total: -39.05 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.68 Total: -10.62 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.57 -9.04 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088401864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.572 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds