Wall clock time and date at job start Tue Mar 31 2020 06:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46855 * 2 1 4 4 C 1.35997 * 116.99775 * 180.02562 * 3 2 1 5 5 C 1.38568 * 120.07033 * 359.96044 * 4 3 2 6 6 C 1.38243 * 119.99690 * 180.02562 * 5 4 3 7 7 C 1.38257 * 120.14794 * 0.02562 * 6 5 4 8 8 C 1.38241 * 120.14302 * 0.02562 * 7 6 5 9 9 C 1.38558 * 120.00478 * 359.97438 * 8 7 6 10 10 O 1.35995 * 120.07806 * 180.02562 * 9 8 7 11 11 C 1.42898 * 116.99694 * 0.02562 * 10 9 8 12 12 C 1.53003 * 109.46847 * 179.97438 * 11 10 9 13 13 N 1.46890 * 109.47286 * 64.99820 * 12 11 10 14 14 C 1.46901 * 111.00351 * 66.04793 * 13 12 11 15 15 C 1.53001 * 109.47302 * 61.26781 * 14 13 12 16 16 C 1.46909 * 111.00270 * 189.99937 * 13 12 11 17 17 C 1.50694 * 109.47379 * 168.76018 * 16 13 12 18 18 H 1.08007 * 119.99929 * 355.02867 * 17 16 13 19 19 C 1.37875 * 119.99932 * 175.02042 * 17 16 13 20 20 N 1.31516 * 120.00079 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99893 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47217 * 90.00339 * 21 19 17 23 23 H 1.48501 * 109.46977 * 210.00681 * 21 19 17 24 24 H 1.48503 * 109.47062 * 329.99974 * 21 19 17 25 25 H 1.08999 * 109.47677 * 59.99569 * 1 2 3 26 26 H 1.09001 * 109.47424 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47162 * 299.99862 * 1 2 3 28 28 H 1.08995 * 109.46716 * 240.00579 * 2 1 3 29 29 H 1.08995 * 109.47196 * 120.00491 * 2 1 3 30 30 H 1.07999 * 120.00320 * 0.04343 * 5 4 3 31 31 H 1.07999 * 119.93148 * 180.27128 * 6 5 4 32 32 H 1.08002 * 119.92778 * 179.97438 * 7 6 5 33 33 H 1.08003 * 119.99824 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.46874 * 299.99224 * 11 10 9 35 35 H 1.08993 * 109.47303 * 59.99909 * 11 10 9 36 36 H 1.09003 * 109.46981 * 185.00139 * 12 11 10 37 37 H 1.09003 * 109.46989 * 304.99392 * 12 11 10 38 38 H 1.08998 * 109.47700 * 181.27369 * 14 13 12 39 39 H 1.09005 * 109.46642 * 301.27213 * 14 13 12 40 40 H 1.09001 * 109.47248 * 179.43434 * 15 14 13 41 41 H 1.09002 * 109.47058 * 299.43924 * 15 14 13 42 42 H 1.09003 * 109.46615 * 59.43277 * 15 14 13 43 43 H 1.08995 * 109.46658 * 288.76628 * 16 13 12 44 44 H 1.09000 * 109.46333 * 48.76039 * 16 13 12 45 45 H 0.96996 * 119.99869 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.1999 0.4276 -0.0002 6 6 5.5702 0.6105 -0.0003 7 6 6.1003 1.8875 0.0000 8 6 5.2624 2.9870 0.0007 9 6 3.8880 2.8107 0.0007 10 8 3.0623 3.8913 0.0010 11 6 3.6802 5.1798 0.0006 12 6 2.5999 6.2634 0.0003 13 7 1.8397 6.1972 1.2554 14 6 2.6866 6.5486 2.4031 15 6 3.1940 7.9830 2.2424 16 6 0.6500 7.0571 1.1963 17 6 -0.2439 6.7594 2.3724 18 1 0.0020 5.9527 3.0471 19 6 -1.3757 7.5170 2.5871 20 7 -1.6754 8.4991 1.7653 21 14 -2.4835 7.1484 4.0454 22 1 -2.0341 7.9374 5.2204 23 1 -3.8828 7.5146 3.7091 24 1 -2.4144 5.7000 4.3659 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.7884 -0.5709 -0.0003 31 1 6.2282 -0.2459 -0.0044 32 1 7.1714 2.0262 0.0004 33 1 5.6790 3.9834 0.0005 34 1 4.3008 5.2854 0.8904 35 1 4.3002 5.2852 -0.8895 36 1 3.0684 7.2435 -0.0896 37 1 1.9260 6.1043 -0.8416 38 1 2.1050 6.4697 3.3216 39 1 3.5353 5.8662 2.4507 40 1 3.8143 8.2472 3.0989 41 1 3.7841 8.0595 1.3291 42 1 2.3451 8.6643 2.1846 43 1 0.9558 8.1029 1.2278 44 1 0.1084 6.8646 0.2702 45 1 -2.4719 9.0317 1.9162 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088401864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:19 Heat of formation + Delta-G solvation = -64.827428 kcal Electronic energy + Delta-G solvation = -23857.342813 eV Core-core repulsion = 20454.064245 eV Total energy + Delta-G solvation = -3403.278567 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42418 -39.81033 -38.71342 -37.61640 -34.78351 -32.83256 -31.84164 -31.10585 -30.87310 -29.74057 -27.76135 -25.38103 -24.98049 -23.92243 -23.16905 -22.22866 -20.63279 -19.64336 -18.36958 -18.26657 -17.44877 -17.12854 -16.95498 -16.61511 -16.31288 -15.70039 -15.59674 -15.52539 -15.08569 -14.55693 -14.46690 -14.12352 -13.87127 -13.60231 -13.36152 -13.18910 -13.07023 -13.00059 -12.83296 -12.73669 -12.60557 -12.53758 -12.40800 -12.08539 -11.84407 -11.82362 -11.74701 -11.60988 -11.34073 -11.17696 -10.59360 -9.64887 -8.84976 -8.69485 -8.18435 -6.27486 0.37959 0.55126 1.38501 1.40354 1.52169 2.34475 2.39087 2.40592 2.84167 3.13409 3.33650 3.84553 3.95364 4.06758 4.07707 4.08904 4.22018 4.23358 4.26632 4.34225 4.39986 4.43752 4.49345 4.53864 4.57353 4.70881 4.74720 4.86498 4.89828 4.93424 4.97595 5.01599 5.21466 5.22126 5.32689 5.37655 5.40882 5.50732 5.59093 5.68224 5.86411 6.09956 6.29031 6.40853 6.68907 6.81158 6.88981 7.41481 8.91970 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.004219 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.614543 B = 6635.753889 C = 8054.752593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.338 6.338 4 C 0.069 3.931 5 C -0.176 4.176 6 C -0.122 4.122 7 C -0.118 4.118 8 C -0.182 4.182 9 C 0.073 3.927 10 O -0.317 6.317 11 C 0.073 3.927 12 C 0.050 3.950 13 N -0.542 5.542 14 C 0.060 3.940 15 C -0.179 4.179 16 C 0.206 3.794 17 C -0.518 4.518 18 H 0.054 0.946 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.270 1.270 25 H 0.055 0.945 26 H 0.108 0.892 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.033 0.967 43 H -0.014 1.014 44 H -0.009 1.009 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.625 -16.198 -4.225 23.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.253 6.253 4 C 0.024 3.976 5 C -0.194 4.194 6 C -0.140 4.140 7 C -0.136 4.136 8 C -0.200 4.200 9 C 0.027 3.973 10 O -0.231 6.231 11 C -0.002 4.002 12 C -0.079 4.079 13 N -0.266 5.266 14 C -0.068 4.068 15 C -0.238 4.238 16 C 0.080 3.920 17 C -0.556 4.556 18 H 0.072 0.928 19 C -0.194 4.194 20 N -0.575 5.575 21 Si 0.789 3.211 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.195 1.195 25 H 0.074 0.926 26 H 0.126 0.874 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.170 0.830 31 H 0.174 0.826 32 H 0.173 0.827 33 H 0.165 0.835 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.003 0.997 44 H 0.009 0.991 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.950 -16.404 -4.202 23.263 hybrid contribution -0.714 1.090 0.414 1.367 sum 15.236 -15.314 -3.788 21.932 Atomic orbital electron populations 1.21809 0.92593 1.04003 1.02494 1.23007 0.96301 0.81029 1.02260 1.86238 1.18986 1.30953 1.89157 1.18730 0.83431 0.92198 1.03283 1.21356 0.94570 0.97357 1.06136 1.21238 0.93948 0.98379 1.00443 1.21243 1.00837 0.91510 0.99976 1.21356 0.90284 1.01853 1.06551 1.18881 0.90372 0.85838 1.02225 1.86325 1.34804 1.13416 1.88566 1.22930 0.95125 0.80117 1.02037 1.22178 0.95860 0.96477 0.93344 1.62173 1.07211 1.54827 1.02383 1.22001 0.95773 0.94696 0.94345 1.22283 1.00641 0.98344 1.02495 1.19399 0.87412 0.89817 0.95410 1.21415 1.07972 1.15230 1.11019 0.92797 1.25838 0.99184 0.94812 0.99575 1.70075 1.27233 1.21151 1.39018 0.85459 0.77797 0.78633 0.79202 1.19535 1.20561 1.19470 0.92625 0.87389 0.93199 0.90496 0.90990 0.82961 0.82552 0.82718 0.83518 0.91046 0.89668 0.91511 0.92284 0.92699 0.90477 0.90732 0.91627 0.94806 0.99662 0.99097 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 10.28 71.98 0.74 -2.54 16 2 C 0.05 1.10 5.46 71.98 0.39 1.49 16 3 O -0.34 -11.45 9.92 -79.65 -0.79 -12.24 16 4 C 0.07 2.11 6.70 22.57 0.15 2.26 16 5 C -0.18 -3.86 9.04 22.35 0.20 -3.66 16 6 C -0.12 -2.17 10.04 22.28 0.22 -1.94 16 7 C -0.12 -2.17 10.04 22.28 0.22 -1.95 16 8 C -0.18 -4.34 9.04 22.35 0.20 -4.13 16 9 C 0.07 2.32 6.70 22.57 0.15 2.47 16 10 O -0.32 -11.98 9.87 -79.62 -0.79 -12.76 16 11 C 0.07 2.23 4.80 71.98 0.35 2.57 16 12 C 0.05 1.85 5.12 86.31 0.44 2.29 16 13 N -0.54 -24.87 4.64 -900.79 -4.18 -29.05 16 14 C 0.06 2.38 5.68 86.30 0.49 2.86 16 15 C -0.18 -6.25 9.26 71.98 0.67 -5.59 16 16 C 0.21 11.45 4.54 85.55 0.39 11.83 16 17 C -0.52 -30.89 8.39 25.60 0.21 -30.68 16 18 H 0.05 3.24 7.39 -2.91 -0.02 3.21 16 19 C 0.00 0.21 5.46 84.65 0.46 0.67 16 20 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 21 Si 0.96 46.12 29.54 68.60 2.03 48.15 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.37 7.66 -2.39 -0.02 1.35 16 29 H 0.07 1.37 7.66 -2.39 -0.02 1.35 16 30 H 0.15 2.49 6.30 -2.91 -0.02 2.47 16 31 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.15 2.89 6.30 -2.91 -0.02 2.87 16 34 H 0.07 1.97 5.83 -2.39 -0.01 1.95 16 35 H 0.09 2.03 7.66 -2.39 -0.02 2.01 16 36 H 0.07 2.23 6.05 -2.39 -0.01 2.21 16 37 H 0.06 2.38 7.92 -2.39 -0.02 2.37 16 38 H 0.05 2.45 6.98 -2.39 -0.02 2.43 16 39 H 0.08 2.63 6.32 -2.38 -0.02 2.62 16 40 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.06 1.98 6.33 -2.39 -0.02 1.96 16 42 H 0.03 1.42 6.29 -2.39 -0.01 1.40 16 43 H -0.01 -0.82 6.02 -2.39 -0.01 -0.84 16 44 H -0.01 -0.55 7.91 -2.39 -0.02 -0.57 16 45 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -75.10 358.73 2.82 -72.28 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.97 Total: 15.08 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 5.30 Total: -24.04 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -3.90 Total: -86.46 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -1.58 Total: -25.00 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -75.10 2.82 -72.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088401864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.452 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds