Wall clock time and date at job start Tue Mar 31 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47346 * 2 1 4 4 C 1.35999 * 117.00109 * 180.02562 * 3 2 1 5 5 C 1.38562 * 120.07186 * 0.27385 * 4 3 2 6 6 C 1.38241 * 119.99680 * 180.27839 * 5 4 3 7 7 C 1.38247 * 120.15096 * 359.72070 * 6 5 4 8 8 C 1.38249 * 120.14317 * 359.97438 * 7 6 5 9 9 C 1.38560 * 119.99907 * 0.02562 * 8 7 6 10 10 O 1.35998 * 120.07355 * 179.97438 * 9 8 7 11 11 C 1.42899 * 116.99798 * 0.02562 * 10 9 8 12 12 C 1.53002 * 109.46921 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46837 * 65.00201 * 12 11 10 14 14 C 1.46900 * 111.00322 * 66.04516 * 13 12 11 15 15 C 1.46898 * 110.99833 * 190.00040 * 13 12 11 16 16 H 1.09001 * 109.47520 * 54.99925 * 15 13 12 17 17 C 1.53006 * 109.47006 * 294.99905 * 15 13 12 18 18 C 1.50697 * 109.47356 * 174.99689 * 15 13 12 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 15 13 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 15 13 21 21 N 1.31510 * 119.99600 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 120.00227 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.46909 * 90.00072 * 22 20 18 24 24 H 1.48503 * 109.46868 * 209.99959 * 22 20 18 25 25 H 1.48495 * 109.46964 * 330.00013 * 22 20 18 26 26 H 1.09002 * 109.46803 * 60.00188 * 1 2 3 27 27 H 1.08996 * 109.47115 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46802 * 300.00339 * 1 2 3 29 29 H 1.09005 * 109.47118 * 239.99654 * 2 1 3 30 30 H 1.09002 * 109.46803 * 119.99812 * 2 1 3 31 31 H 1.08004 * 120.00254 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.92833 * 179.74446 * 6 5 4 33 33 H 1.07993 * 119.93199 * 180.02562 * 7 6 5 34 34 H 1.08004 * 120.00142 * 180.02562 * 8 7 6 35 35 H 1.08998 * 109.47023 * 59.99867 * 11 10 9 36 36 H 1.09001 * 109.47118 * 299.99222 * 11 10 9 37 37 H 1.08992 * 109.47575 * 305.00068 * 12 11 10 38 38 H 1.09001 * 109.47014 * 184.99801 * 12 11 10 39 39 H 1.08995 * 109.47238 * 183.95632 * 14 13 12 40 40 H 1.09001 * 109.46753 * 303.95614 * 14 13 12 41 41 H 1.09000 * 109.46832 * 63.95033 * 14 13 12 42 42 H 1.09001 * 109.47002 * 299.99782 * 17 15 13 43 43 H 1.08993 * 109.46955 * 60.00219 * 17 15 13 44 44 H 1.09000 * 109.47050 * 180.02562 * 17 15 13 45 45 H 0.97006 * 120.00212 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3547 1.5254 -0.0005 5 6 4.2001 0.4276 -0.0068 6 6 5.5703 0.6104 -0.0015 7 6 6.1005 1.8872 0.0042 8 6 5.2626 2.9868 0.0041 9 6 3.8882 2.8106 -0.0012 10 8 3.0625 3.8912 -0.0008 11 6 3.6804 5.1797 0.0047 12 6 2.6002 6.2633 0.0037 13 7 1.8357 6.1936 1.2561 14 6 2.6787 6.5416 2.4077 15 6 0.6463 7.0537 1.1954 16 1 0.0492 6.7870 0.3233 17 6 1.0801 8.5170 1.0884 18 6 -0.1756 6.8633 2.4441 19 1 0.1530 6.1729 3.2068 20 6 -1.3464 7.5715 2.6134 21 7 -1.7462 8.4126 1.6849 22 14 -2.3649 7.3360 4.1616 23 1 -1.9215 8.3033 5.1975 24 1 -3.7986 7.5662 3.8506 25 1 -2.1840 5.9516 4.6672 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7885 -0.5710 -0.0108 32 1 6.2283 -0.2461 -0.0022 33 1 7.1714 2.0260 0.0079 34 1 5.6792 3.9833 0.0081 35 1 4.3036 5.2876 -0.8831 36 1 4.2980 5.2827 0.8969 37 1 1.9292 6.1067 -0.8408 38 1 3.0691 7.2436 -0.0817 39 1 2.1080 6.4142 3.3275 40 1 3.5521 5.8897 2.4287 41 1 3.0017 7.5790 2.3211 42 1 1.6772 8.7837 1.9605 43 1 1.6745 8.6546 0.1852 44 1 0.1976 9.1553 1.0438 45 1 -2.5702 8.9106 1.8037 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088401883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:39 Heat of formation + Delta-G solvation = -39.323420 kcal Electronic energy + Delta-G solvation = -23913.708576 eV Core-core repulsion = 20511.535946 eV Total energy + Delta-G solvation = -3402.172631 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39619 -38.55124 -37.26973 -36.46875 -32.85603 -31.88192 -30.44292 -30.04442 -28.81180 -27.78246 -25.37763 -25.09049 -24.01176 -22.27861 -22.13450 -20.83795 -19.05056 -18.60585 -17.20351 -16.23408 -16.21321 -15.95238 -15.71973 -14.93064 -14.75344 -14.68653 -14.07313 -13.96169 -13.59927 -13.28592 -12.97516 -12.70085 -12.58248 -12.48262 -11.98724 -11.92092 -11.81922 -11.47180 -11.21782 -11.06455 -10.98932 -10.94372 -10.72991 -10.68539 -10.61778 -10.44425 -10.27617 -9.97676 -9.69449 -8.80808 -8.71316 -8.33352 -7.65705 -7.04889 -5.95294 -3.98044 1.31047 1.50704 3.27411 3.34738 3.41131 3.46395 3.48530 3.77786 4.46382 4.76220 4.88358 4.91365 4.97628 5.00340 5.07290 5.19583 5.27065 5.36890 5.40081 5.43989 5.48709 5.57800 5.69160 5.71898 5.82389 6.02824 6.10671 6.19387 6.22931 6.27811 6.35864 6.43367 6.48988 6.70428 6.72503 6.84438 6.93609 7.15824 7.30336 7.54293 7.75954 7.83182 7.90099 8.19644 8.44154 8.66580 9.07832 9.66508 11.12123 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.004059 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.657219 B = 6896.312308 C = 8105.134869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.297 6.297 4 C 0.100 3.900 5 C -0.177 4.177 6 C -0.129 4.129 7 C -0.119 4.119 8 C -0.182 4.182 9 C 0.113 3.887 10 O -0.277 6.277 11 C 0.064 3.936 12 C 0.054 3.946 13 N -0.526 5.526 14 C 0.032 3.968 15 C 0.210 3.790 16 H 0.040 0.960 17 C -0.173 4.173 18 C -0.496 4.496 19 H 0.062 0.938 20 C 0.057 3.943 21 N -0.896 5.896 22 Si 0.895 3.105 23 H -0.283 1.283 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.017 0.983 42 H 0.030 0.970 43 H 0.006 0.994 44 H 0.088 0.912 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.297 -14.206 -4.933 20.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.210 6.210 4 C 0.054 3.946 5 C -0.196 4.196 6 C -0.147 4.147 7 C -0.138 4.138 8 C -0.201 4.201 9 C 0.066 3.934 10 O -0.189 6.189 11 C -0.011 4.011 12 C -0.075 4.075 13 N -0.249 5.249 14 C -0.116 4.116 15 C 0.104 3.896 16 H 0.058 0.942 17 C -0.232 4.232 18 C -0.534 4.534 19 H 0.080 0.920 20 C -0.143 4.143 21 N -0.536 5.536 22 Si 0.723 3.277 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.198 1.198 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.035 0.965 42 H 0.049 0.951 43 H 0.025 0.975 44 H 0.107 0.893 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.583 -14.412 -4.909 19.752 hybrid contribution 0.071 0.693 0.717 1.000 sum 12.654 -13.719 -4.192 19.129 Atomic orbital electron populations 1.21762 0.92637 1.02378 1.04221 1.22751 0.96181 0.82392 1.00668 1.86293 1.17850 1.28303 1.88595 1.18288 0.83327 0.91247 1.01728 1.21022 0.94094 0.97265 1.07220 1.20744 0.94154 0.97133 1.02713 1.20795 0.99364 0.92014 1.01581 1.21097 0.91396 1.00246 1.07328 1.18455 0.89205 0.86255 0.99489 1.86404 1.32852 1.12226 1.87449 1.23028 0.96444 0.81587 1.00074 1.22065 0.95438 0.93894 0.96073 1.62328 1.07238 1.55456 0.99917 1.22281 0.96160 0.96929 0.96261 1.19322 0.85968 0.86098 0.98173 0.94198 1.22421 1.01422 1.03155 0.96220 1.21122 1.05723 1.23019 1.03550 0.91961 1.24916 0.97452 0.95316 0.96635 1.69885 1.23076 1.27057 1.33570 0.86536 0.79348 0.78499 0.83270 1.20903 1.21324 1.19840 0.91365 0.90736 0.91059 0.92544 0.92416 0.85220 0.86066 0.86014 0.85009 0.92752 0.92203 0.90387 0.93502 0.90781 0.94216 0.96469 0.95106 0.97476 0.89306 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 37.16 0.38 -1.24 16 2 C 0.06 0.64 5.46 37.16 0.20 0.84 16 3 O -0.30 -4.85 9.92 -34.24 -0.34 -5.19 16 4 C 0.10 1.54 6.70 -39.12 -0.26 1.28 16 5 C -0.18 -2.14 9.04 -39.46 -0.36 -2.50 16 6 C -0.13 -1.39 10.04 -39.58 -0.40 -1.79 16 7 C -0.12 -1.33 10.04 -39.57 -0.40 -1.72 16 8 C -0.18 -2.38 9.04 -39.46 -0.36 -2.73 16 9 C 0.11 1.82 6.70 -39.12 -0.26 1.56 16 10 O -0.28 -5.13 9.87 -34.23 -0.34 -5.47 16 11 C 0.06 1.01 4.80 37.16 0.18 1.19 16 12 C 0.05 1.00 4.78 -3.82 -0.02 0.99 16 13 N -0.53 -11.73 4.69 -236.28 -1.11 -12.84 16 14 C 0.03 0.65 8.70 60.06 0.52 1.17 16 15 C 0.21 5.43 2.34 -68.86 -0.16 5.26 16 16 H 0.04 1.14 8.03 -51.93 -0.42 0.72 16 17 C -0.17 -4.21 8.28 37.16 0.31 -3.90 16 18 C -0.50 -13.89 7.94 -34.44 -0.27 -14.16 16 19 H 0.06 1.76 6.75 -52.49 -0.35 1.41 16 20 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 21 N -0.90 -25.89 11.32 55.43 0.63 -25.27 16 22 Si 0.90 21.77 29.54 -169.99 -5.02 16.74 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 30 H 0.06 0.58 7.68 -51.93 -0.40 0.18 16 31 H 0.13 1.24 6.30 -52.48 -0.33 0.91 16 32 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.13 1.49 6.30 -52.48 -0.33 1.16 16 35 H 0.05 0.70 7.66 -51.93 -0.40 0.31 16 36 H 0.06 0.89 5.78 -51.93 -0.30 0.59 16 37 H 0.08 1.50 8.00 -51.93 -0.42 1.09 16 38 H 0.05 0.81 6.94 -51.93 -0.36 0.45 16 39 H 0.07 1.61 6.53 -51.93 -0.34 1.27 16 40 H 0.04 0.70 6.21 -51.93 -0.32 0.38 16 41 H 0.02 0.33 6.28 -51.93 -0.33 0.01 16 42 H 0.03 0.72 6.39 -51.93 -0.33 0.39 16 43 H 0.01 0.14 6.75 -51.93 -0.35 -0.21 16 44 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 45 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 354.26 15.07 5.34 5.34 Total: -1.00 -31.54 354.26 -8.76 -40.30 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.94 Total: 0.63 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -0.99 Total: -14.25 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: -0.48 Total: -38.10 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.68 Total: -10.66 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.54 -8.76 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088401883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.974 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds