Wall clock time and date at job start Tue Mar 31 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47346 * 2 1 4 4 C 1.35999 * 117.00109 * 180.02562 * 3 2 1 5 5 C 1.38562 * 120.07186 * 0.27385 * 4 3 2 6 6 C 1.38241 * 119.99680 * 180.27839 * 5 4 3 7 7 C 1.38247 * 120.15096 * 359.72070 * 6 5 4 8 8 C 1.38249 * 120.14317 * 359.97438 * 7 6 5 9 9 C 1.38560 * 119.99907 * 0.02562 * 8 7 6 10 10 O 1.35998 * 120.07355 * 179.97438 * 9 8 7 11 11 C 1.42899 * 116.99798 * 0.02562 * 10 9 8 12 12 C 1.53002 * 109.46921 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46837 * 65.00201 * 12 11 10 14 14 C 1.46900 * 111.00322 * 66.04516 * 13 12 11 15 15 C 1.46898 * 110.99833 * 190.00040 * 13 12 11 16 16 H 1.09001 * 109.47520 * 54.99925 * 15 13 12 17 17 C 1.53006 * 109.47006 * 294.99905 * 15 13 12 18 18 C 1.50697 * 109.47356 * 174.99689 * 15 13 12 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 15 13 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 15 13 21 21 N 1.31510 * 119.99600 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 120.00227 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.46909 * 90.00072 * 22 20 18 24 24 H 1.48503 * 109.46868 * 209.99959 * 22 20 18 25 25 H 1.48495 * 109.46964 * 330.00013 * 22 20 18 26 26 H 1.09002 * 109.46803 * 60.00188 * 1 2 3 27 27 H 1.08996 * 109.47115 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46802 * 300.00339 * 1 2 3 29 29 H 1.09005 * 109.47118 * 239.99654 * 2 1 3 30 30 H 1.09002 * 109.46803 * 119.99812 * 2 1 3 31 31 H 1.08004 * 120.00254 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.92833 * 179.74446 * 6 5 4 33 33 H 1.07993 * 119.93199 * 180.02562 * 7 6 5 34 34 H 1.08004 * 120.00142 * 180.02562 * 8 7 6 35 35 H 1.08998 * 109.47023 * 59.99867 * 11 10 9 36 36 H 1.09001 * 109.47118 * 299.99222 * 11 10 9 37 37 H 1.08992 * 109.47575 * 305.00068 * 12 11 10 38 38 H 1.09001 * 109.47014 * 184.99801 * 12 11 10 39 39 H 1.08995 * 109.47238 * 183.95632 * 14 13 12 40 40 H 1.09001 * 109.46753 * 303.95614 * 14 13 12 41 41 H 1.09000 * 109.46832 * 63.95033 * 14 13 12 42 42 H 1.09001 * 109.47002 * 299.99782 * 17 15 13 43 43 H 1.08993 * 109.46955 * 60.00219 * 17 15 13 44 44 H 1.09000 * 109.47050 * 180.02562 * 17 15 13 45 45 H 0.97006 * 120.00212 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3547 1.5254 -0.0005 5 6 4.2001 0.4276 -0.0068 6 6 5.5703 0.6104 -0.0015 7 6 6.1005 1.8872 0.0042 8 6 5.2626 2.9868 0.0041 9 6 3.8882 2.8106 -0.0012 10 8 3.0625 3.8912 -0.0008 11 6 3.6804 5.1797 0.0047 12 6 2.6002 6.2633 0.0037 13 7 1.8357 6.1936 1.2561 14 6 2.6787 6.5416 2.4077 15 6 0.6463 7.0537 1.1954 16 1 0.0492 6.7870 0.3233 17 6 1.0801 8.5170 1.0884 18 6 -0.1756 6.8633 2.4441 19 1 0.1530 6.1729 3.2068 20 6 -1.3464 7.5715 2.6134 21 7 -1.7462 8.4126 1.6849 22 14 -2.3649 7.3360 4.1616 23 1 -1.9215 8.3033 5.1975 24 1 -3.7986 7.5662 3.8506 25 1 -2.1840 5.9516 4.6672 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7885 -0.5710 -0.0108 32 1 6.2283 -0.2461 -0.0022 33 1 7.1714 2.0260 0.0079 34 1 5.6792 3.9833 0.0081 35 1 4.3036 5.2876 -0.8831 36 1 4.2980 5.2827 0.8969 37 1 1.9292 6.1067 -0.8408 38 1 3.0691 7.2436 -0.0817 39 1 2.1080 6.4142 3.3275 40 1 3.5521 5.8897 2.4287 41 1 3.0017 7.5790 2.3211 42 1 1.6772 8.7837 1.9605 43 1 1.6745 8.6546 0.1852 44 1 0.1976 9.1553 1.0438 45 1 -2.5702 8.9106 1.8037 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088401883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:39 Heat of formation + Delta-G solvation = -58.896952 kcal Electronic energy + Delta-G solvation = -23914.557348 eV Core-core repulsion = 20511.535946 eV Total energy + Delta-G solvation = -3403.021403 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.42060 -39.78126 -38.74861 -37.65329 -34.85815 -32.82415 -31.87559 -31.12078 -30.11650 -29.30019 -27.30678 -26.82595 -25.04854 -23.58082 -23.15370 -22.08359 -20.79901 -19.63710 -18.27343 -18.20155 -17.49583 -17.12155 -16.98404 -16.51683 -15.93800 -15.66693 -15.59219 -15.38892 -15.13318 -14.60378 -14.34619 -14.11617 -13.78195 -13.61499 -13.35974 -13.14505 -13.05630 -12.77893 -12.74903 -12.66907 -12.60327 -12.49544 -12.34303 -12.08968 -12.02245 -11.83592 -11.66835 -11.59601 -11.44608 -10.88267 -10.49489 -9.65059 -8.78973 -8.69456 -8.10606 -6.20981 0.37726 0.54977 1.40602 1.41931 1.53017 2.34567 2.39210 2.43009 2.83985 3.18347 3.38133 3.85268 3.96284 4.06896 4.08013 4.11673 4.23508 4.26175 4.33406 4.37759 4.48227 4.51958 4.56498 4.61385 4.72480 4.78258 4.79525 4.88093 4.89536 4.93560 4.93754 5.13789 5.19455 5.21773 5.32581 5.40623 5.55024 5.58886 5.71518 5.80042 5.86287 6.20201 6.30035 6.50332 6.74013 6.82302 6.92368 7.47943 8.95809 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.004059 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.657219 B = 6896.312308 C = 8105.134869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.338 6.338 4 C 0.069 3.931 5 C -0.176 4.176 6 C -0.122 4.122 7 C -0.118 4.118 8 C -0.182 4.182 9 C 0.073 3.927 10 O -0.317 6.317 11 C 0.071 3.929 12 C 0.054 3.946 13 N -0.544 5.544 14 C 0.039 3.961 15 C 0.215 3.785 16 H 0.000 1.000 17 C -0.157 4.157 18 C -0.514 4.514 19 H 0.052 0.948 20 C 0.011 3.989 21 N -0.921 5.921 22 Si 0.958 3.042 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.273 1.273 26 H 0.055 0.945 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.024 0.976 42 H 0.035 0.965 43 H 0.029 0.971 44 H 0.061 0.939 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.789 -15.793 -4.548 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.253 6.253 4 C 0.024 3.976 5 C -0.194 4.194 6 C -0.140 4.140 7 C -0.136 4.136 8 C -0.201 4.201 9 C 0.027 3.973 10 O -0.231 6.231 11 C -0.004 4.004 12 C -0.074 4.074 13 N -0.268 5.268 14 C -0.109 4.109 15 C 0.108 3.892 16 H 0.018 0.982 17 C -0.216 4.216 18 C -0.553 4.553 19 H 0.070 0.930 20 C -0.187 4.187 21 N -0.561 5.561 22 Si 0.784 3.216 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 H 0.074 0.926 27 H 0.126 0.874 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.171 0.829 32 H 0.175 0.825 33 H 0.173 0.827 34 H 0.164 0.836 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.080 0.920 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.100 -16.011 -4.528 22.469 hybrid contribution -0.623 1.073 0.541 1.353 sum 14.478 -14.938 -3.987 21.181 Atomic orbital electron populations 1.21809 0.92572 1.04005 1.02504 1.23012 0.96316 0.81026 1.02256 1.86236 1.18966 1.30961 1.89153 1.18724 0.83441 0.92181 1.03269 1.21357 0.94563 0.97367 1.06128 1.21235 0.93961 0.98366 1.00444 1.21240 1.00829 0.91519 0.99993 1.21358 0.90316 1.01836 1.06577 1.18885 0.90366 0.85863 1.02210 1.86324 1.34791 1.13408 1.88550 1.22969 0.95244 0.80192 1.01965 1.22117 0.95644 0.96086 0.93585 1.62174 1.07479 1.54922 1.02223 1.22221 0.96269 0.97980 0.94414 1.19053 0.87128 0.87463 0.95561 0.98224 1.22188 1.00499 1.01495 0.97460 1.21367 1.06673 1.23010 1.04204 0.92967 1.25679 0.98454 0.94992 0.99575 1.70012 1.23420 1.27564 1.35112 0.85551 0.77820 0.78430 0.79795 1.19820 1.20788 1.19826 0.92612 0.87394 0.93183 0.90494 0.91004 0.82937 0.82542 0.82738 0.83570 0.89718 0.91166 0.92191 0.91873 0.92987 0.91416 0.95776 0.94637 0.95220 0.92036 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 10.28 71.98 0.74 -2.53 16 2 C 0.05 1.09 5.46 71.98 0.39 1.48 16 3 O -0.34 -11.44 9.92 -79.68 -0.79 -12.23 16 4 C 0.07 2.13 6.70 22.57 0.15 2.28 16 5 C -0.18 -3.88 9.04 22.35 0.20 -3.67 16 6 C -0.12 -2.18 10.04 22.27 0.22 -1.96 16 7 C -0.12 -2.20 10.04 22.27 0.22 -1.97 16 8 C -0.18 -4.39 9.04 22.35 0.20 -4.19 16 9 C 0.07 2.33 6.70 22.57 0.15 2.48 16 10 O -0.32 -12.00 9.87 -79.66 -0.79 -12.78 16 11 C 0.07 2.19 4.80 71.98 0.35 2.54 16 12 C 0.05 2.01 4.78 86.30 0.41 2.42 16 13 N -0.54 -24.79 4.69 -901.46 -4.23 -29.02 16 14 C 0.04 1.57 8.70 127.69 1.11 2.68 16 15 C 0.22 11.49 2.34 44.17 0.10 11.59 16 16 H 0.00 -0.01 8.03 -2.39 -0.02 -0.03 16 17 C -0.16 -7.75 8.28 71.98 0.60 -7.16 16 18 C -0.51 -29.70 7.94 25.60 0.20 -29.50 16 19 H 0.05 3.05 6.75 -2.91 -0.02 3.03 16 20 C 0.01 0.64 5.30 84.66 0.45 1.09 16 21 N -0.92 -54.49 11.32 21.45 0.24 -54.25 16 22 Si 0.96 45.32 29.54 68.60 2.03 47.34 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.37 7.65 -2.38 -0.02 1.35 16 30 H 0.07 1.37 7.68 -2.39 -0.02 1.35 16 31 H 0.15 2.50 6.30 -2.91 -0.02 2.48 16 32 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.15 2.93 6.30 -2.91 -0.02 2.91 16 35 H 0.08 2.05 7.66 -2.39 -0.02 2.03 16 36 H 0.07 1.96 5.78 -2.39 -0.01 1.95 16 37 H 0.06 2.41 8.00 -2.39 -0.02 2.39 16 38 H 0.06 2.12 6.94 -2.39 -0.02 2.11 16 39 H 0.05 2.29 6.53 -2.39 -0.02 2.27 16 40 H 0.07 2.30 6.21 -2.39 -0.01 2.29 16 41 H 0.02 0.92 6.28 -2.39 -0.01 0.90 16 42 H 0.03 1.67 6.39 -2.39 -0.02 1.65 16 43 H 0.03 1.28 6.75 -2.39 -0.02 1.26 16 44 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 45 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 Total: -1.00 -71.69 354.26 2.95 -68.74 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.97 Total: 16.60 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 5.51 Total: -24.41 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -3.99 Total: -83.26 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -1.58 Total: -25.02 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -71.69 2.95 -68.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088401883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.846 kcal (2) G-P(sol) polarization free energy of solvation -71.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds