Wall clock time and date at job start Tue Mar 31 2020 06:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47352 * 2 1 4 4 C 1.36942 * 119.99963 * 84.60295 * 3 2 1 5 5 H 1.07994 * 119.99876 * 37.61248 * 4 3 2 6 6 C 1.38813 * 119.99937 * 217.88973 * 4 3 2 7 7 N 1.31620 * 120.00032 * 20.36853 * 6 4 3 8 8 Si 1.86794 * 119.99865 * 200.36521 * 6 4 3 9 9 H 1.48501 * 109.47300 * 90.00103 * 8 6 4 10 10 H 1.48504 * 109.46908 * 210.00012 * 8 6 4 11 11 H 1.48503 * 109.47310 * 330.00055 * 8 6 4 12 12 C 1.46500 * 120.00226 * 264.60602 * 3 2 1 13 13 C 1.50698 * 109.46821 * 269.99837 * 12 3 2 14 14 C 1.38249 * 119.92927 * 269.72310 * 13 12 3 15 15 C 1.38236 * 120.15248 * 179.72812 * 14 13 12 16 16 C 1.38572 * 119.99372 * 0.54558 * 15 14 13 17 17 O 1.35996 * 120.07148 * 179.70624 * 16 15 14 18 18 C 1.42904 * 116.99905 * 354.90425 * 17 16 15 19 19 C 1.52996 * 109.46826 * 84.23697 * 18 17 16 20 20 C 1.53005 * 109.46690 * 204.23278 * 18 17 16 21 21 C 1.39147 * 119.85599 * 359.73116 * 16 15 14 22 22 O 1.36001 * 120.07595 * 180.02562 * 21 16 15 23 23 C 1.42899 * 116.99891 * 179.97438 * 22 21 16 24 24 C 1.38247 * 119.92599 * 90.00089 * 13 12 3 25 25 H 1.08993 * 109.47335 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47132 * 299.99840 * 1 2 3 27 27 H 1.08997 * 109.47307 * 59.99781 * 1 2 3 28 28 H 1.08997 * 109.47372 * 239.99776 * 2 1 3 29 29 H 1.09005 * 109.46791 * 119.99857 * 2 1 3 30 30 H 0.96997 * 119.99824 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.46739 * 29.99760 * 12 3 2 32 32 H 1.09000 * 109.47382 * 149.99907 * 12 3 2 33 33 H 1.08005 * 119.92123 * 359.97438 * 14 13 12 34 34 H 1.08000 * 120.00807 * 180.25173 * 15 14 13 35 35 H 1.08995 * 109.47177 * 324.23146 * 18 17 16 36 36 H 1.09002 * 109.46899 * 180.02562 * 19 18 17 37 37 H 1.09007 * 109.46985 * 299.99340 * 19 18 17 38 38 H 1.08995 * 109.47693 * 59.99764 * 19 18 17 39 39 H 1.08992 * 109.47360 * 60.00533 * 20 18 17 40 40 H 1.09008 * 109.46561 * 180.02562 * 20 18 17 41 41 H 1.08995 * 109.47202 * 299.99852 * 20 18 17 42 42 H 1.08996 * 109.47278 * 299.99774 * 23 22 21 43 43 H 1.08997 * 109.47211 * 59.99845 * 23 22 21 44 44 H 1.08998 * 109.46715 * 180.02562 * 23 22 21 45 45 H 1.07996 * 120.00068 * 359.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1415 2.0639 1.1807 5 1 2.4790 1.5504 2.0687 6 6 1.8268 3.4147 1.2374 7 7 1.0519 3.9491 0.3175 8 14 2.5032 4.4740 2.6193 9 1 3.8088 5.0497 2.2082 10 1 1.5484 5.5727 2.9135 11 1 2.6900 3.6417 3.8350 12 6 2.3750 2.0321 -1.2631 13 6 3.8309 1.7837 -1.5625 14 6 4.7896 2.6701 -1.1080 15 6 6.1269 2.4438 -1.3752 16 6 6.5080 1.3323 -2.1099 17 8 7.8227 1.1114 -2.3788 18 6 8.7471 2.1219 -1.9708 19 6 9.1181 1.9105 -0.5016 20 6 10.0085 2.0370 -2.8326 21 6 5.5427 0.4432 -2.5722 22 8 5.9119 -0.6493 -3.2932 23 6 4.8671 -1.5186 -3.7347 24 6 4.2044 0.6730 -2.2960 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.8324 4.8931 0.3569 31 1 1.7637 1.6234 -2.0676 32 1 2.1987 3.1046 -1.1816 33 1 4.4933 3.5393 -0.5395 34 1 6.8741 3.1356 -1.0156 35 1 8.2894 3.1035 -2.0924 36 1 9.8228 2.6816 -0.1903 37 1 8.2194 1.9710 0.1124 38 1 9.5758 0.9289 -0.3800 39 1 9.7443 2.1876 -3.8792 40 1 10.7138 2.8076 -2.5211 41 1 10.4663 1.0553 -2.7109 42 1 4.3278 -1.9065 -2.8706 43 1 4.1793 -0.9647 -4.3736 44 1 5.2975 -2.3478 -4.2962 45 1 3.4533 -0.0157 -2.6534 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:26 Heat of formation + Delta-G solvation = -36.674989 kcal Electronic energy + Delta-G solvation = -24462.859772 eV Core-core repulsion = 21060.801986 eV Total energy + Delta-G solvation = -3402.057786 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.18892 -38.41757 -37.08309 -35.35773 -33.05690 -31.81212 -30.57830 -29.61188 -28.43537 -27.33340 -26.99832 -25.24400 -23.54796 -22.58604 -21.40130 -20.41085 -19.95126 -18.16427 -16.92895 -16.44124 -16.00222 -15.58862 -15.00482 -14.73463 -14.49923 -14.30444 -14.02434 -13.85571 -13.54724 -13.23294 -12.95725 -12.61814 -12.60533 -12.31775 -12.06240 -11.99943 -11.67417 -11.51890 -11.26793 -11.20759 -11.07988 -10.85400 -10.72943 -10.61469 -10.52476 -10.35668 -10.22833 -9.94489 -9.92579 -9.74500 -8.52952 -8.12377 -7.19378 -6.60181 -5.81911 -3.38209 1.86852 2.07852 3.33324 3.41666 3.43378 3.47557 3.63003 4.29917 4.48604 4.80601 4.93592 5.09030 5.22027 5.29806 5.32984 5.37606 5.47305 5.49464 5.61431 5.62274 5.69029 5.72316 5.77126 5.81915 5.87363 6.06265 6.10181 6.13251 6.18536 6.24997 6.42482 6.51335 6.63060 6.70354 6.80787 6.97333 6.99728 7.25302 7.31480 7.41371 7.45067 7.67965 7.80865 8.04840 8.50704 9.15947 9.77829 10.37119 11.18679 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.005467 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.919789 B = 5120.246247 C = 6670.439780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 N -0.576 5.576 4 C -0.251 4.251 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.277 1.277 12 C 0.177 3.823 13 C -0.066 4.066 14 C -0.095 4.095 15 C -0.177 4.177 16 C 0.078 3.922 17 O -0.306 6.306 18 C 0.077 3.923 19 C -0.181 4.181 20 C -0.145 4.145 21 C 0.087 3.913 22 O -0.315 6.315 23 C 0.030 3.970 24 C -0.171 4.171 25 H 0.029 0.971 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.032 0.968 29 H 0.037 0.963 30 H 0.255 0.745 31 H 0.032 0.968 32 H 0.105 0.895 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.092 0.908 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.210 -4.974 -6.943 14.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.018 3.982 3 N -0.296 5.296 4 C -0.381 4.381 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.722 3.278 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.051 3.949 13 C -0.069 4.069 14 C -0.114 4.114 15 C -0.195 4.195 16 C 0.034 3.966 17 O -0.221 6.221 18 C 0.020 3.980 19 C -0.238 4.238 20 C -0.203 4.203 21 C 0.043 3.957 22 O -0.229 6.229 23 C -0.066 4.066 24 C -0.190 4.190 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.110 0.890 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.380 -5.045 -7.085 14.323 hybrid contribution 0.027 0.749 0.935 1.199 sum 11.407 -4.296 -6.150 13.653 Atomic orbital electron populations 1.22242 0.99470 0.98227 1.02056 1.20851 0.92023 0.87350 0.97957 1.43757 1.72763 1.10013 1.03038 1.19031 1.38086 0.92216 0.88794 0.92317 1.25143 0.96995 0.98938 0.97626 1.69972 1.34397 1.12412 1.36015 0.86453 0.78649 0.80319 0.82396 1.21203 1.21717 1.20257 1.19983 0.85591 1.02386 0.86908 1.21012 1.00147 0.92440 0.93304 1.20846 0.91083 1.00189 0.99274 1.21059 0.97669 0.97814 1.02980 1.18012 0.82384 0.95463 1.00784 1.86146 1.13372 1.44783 1.77830 1.22315 0.89659 0.91539 0.94478 1.22390 1.02621 1.02675 0.96116 1.21815 0.95615 1.02801 1.00022 1.18202 0.91451 0.88635 0.97455 1.86090 1.34712 1.34006 1.68064 1.22948 0.91258 0.93099 0.99260 1.20977 0.92858 1.00618 1.04556 0.95204 0.92589 0.93742 0.94928 0.94462 0.93498 0.94968 0.87783 0.85762 0.85629 0.91202 0.91472 0.91515 0.91692 0.91845 0.90939 0.91700 0.92933 0.93033 0.88953 0.85770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 10.21 37.16 0.38 -2.82 16 2 C 0.14 3.04 6.40 -4.04 -0.03 3.01 16 3 N -0.58 -13.96 2.42 -174.61 -0.42 -14.38 16 4 C -0.25 -6.67 9.46 -15.06 -0.14 -6.81 16 5 H 0.06 1.59 7.91 -52.49 -0.42 1.18 16 6 C 0.01 0.35 4.98 -17.43 -0.09 0.27 16 7 N -0.89 -24.47 11.43 55.49 0.63 -23.83 16 8 Si 0.89 21.04 29.60 -169.99 -5.03 16.00 16 9 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.18 4.06 5.39 -5.19 -0.03 4.04 16 13 C -0.07 -1.36 5.46 -104.62 -0.57 -1.93 16 14 C -0.09 -1.92 9.69 -39.58 -0.38 -2.30 16 15 C -0.18 -3.16 8.22 -39.46 -0.32 -3.48 16 16 C 0.08 1.43 6.61 -39.12 -0.26 1.17 16 17 O -0.31 -5.14 9.59 -34.23 -0.33 -5.47 16 18 C 0.08 0.98 2.85 -26.73 -0.08 0.90 16 19 C -0.18 -2.13 9.16 37.16 0.34 -1.79 16 20 C -0.15 -1.46 9.56 37.16 0.36 -1.11 16 21 C 0.09 1.62 6.70 -39.12 -0.26 1.35 16 22 O -0.31 -5.37 10.28 -34.25 -0.35 -5.73 16 23 C 0.03 0.37 9.81 101.05 0.99 1.36 16 24 C -0.17 -3.18 8.69 -39.46 -0.34 -3.53 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 29 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.03 0.70 8.01 -51.93 -0.42 0.28 16 32 H 0.10 2.67 5.44 -51.93 -0.28 2.39 16 33 H 0.12 2.65 8.06 -52.48 -0.42 2.23 16 34 H 0.13 1.94 5.41 -52.49 -0.28 1.66 16 35 H 0.07 0.87 6.34 -51.93 -0.33 0.54 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.89 6.86 -51.93 -0.36 0.53 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 43 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.12 2.10 6.30 -52.49 -0.33 1.77 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -29.58 365.16 -7.84 -37.42 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.41 Total: 2.15 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -0.44 Total: -11.66 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.21 Total: -38.21 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -0.68 Total: -11.20 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.58 -7.84 -37.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.744 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds