Wall clock time and date at job start Tue Mar 31 2020 06:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47352 * 2 1 4 4 C 1.36942 * 119.99963 * 84.60295 * 3 2 1 5 5 H 1.07994 * 119.99876 * 37.61248 * 4 3 2 6 6 C 1.38813 * 119.99937 * 217.88973 * 4 3 2 7 7 N 1.31620 * 120.00032 * 20.36853 * 6 4 3 8 8 Si 1.86794 * 119.99865 * 200.36521 * 6 4 3 9 9 H 1.48501 * 109.47300 * 90.00103 * 8 6 4 10 10 H 1.48504 * 109.46908 * 210.00012 * 8 6 4 11 11 H 1.48503 * 109.47310 * 330.00055 * 8 6 4 12 12 C 1.46500 * 120.00226 * 264.60602 * 3 2 1 13 13 C 1.50698 * 109.46821 * 269.99837 * 12 3 2 14 14 C 1.38249 * 119.92927 * 269.72310 * 13 12 3 15 15 C 1.38236 * 120.15248 * 179.72812 * 14 13 12 16 16 C 1.38572 * 119.99372 * 0.54558 * 15 14 13 17 17 O 1.35996 * 120.07148 * 179.70624 * 16 15 14 18 18 C 1.42904 * 116.99905 * 354.90425 * 17 16 15 19 19 C 1.52996 * 109.46826 * 84.23697 * 18 17 16 20 20 C 1.53005 * 109.46690 * 204.23278 * 18 17 16 21 21 C 1.39147 * 119.85599 * 359.73116 * 16 15 14 22 22 O 1.36001 * 120.07595 * 180.02562 * 21 16 15 23 23 C 1.42899 * 116.99891 * 179.97438 * 22 21 16 24 24 C 1.38247 * 119.92599 * 90.00089 * 13 12 3 25 25 H 1.08993 * 109.47335 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47132 * 299.99840 * 1 2 3 27 27 H 1.08997 * 109.47307 * 59.99781 * 1 2 3 28 28 H 1.08997 * 109.47372 * 239.99776 * 2 1 3 29 29 H 1.09005 * 109.46791 * 119.99857 * 2 1 3 30 30 H 0.96997 * 119.99824 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.46739 * 29.99760 * 12 3 2 32 32 H 1.09000 * 109.47382 * 149.99907 * 12 3 2 33 33 H 1.08005 * 119.92123 * 359.97438 * 14 13 12 34 34 H 1.08000 * 120.00807 * 180.25173 * 15 14 13 35 35 H 1.08995 * 109.47177 * 324.23146 * 18 17 16 36 36 H 1.09002 * 109.46899 * 180.02562 * 19 18 17 37 37 H 1.09007 * 109.46985 * 299.99340 * 19 18 17 38 38 H 1.08995 * 109.47693 * 59.99764 * 19 18 17 39 39 H 1.08992 * 109.47360 * 60.00533 * 20 18 17 40 40 H 1.09008 * 109.46561 * 180.02562 * 20 18 17 41 41 H 1.08995 * 109.47202 * 299.99852 * 20 18 17 42 42 H 1.08996 * 109.47278 * 299.99774 * 23 22 21 43 43 H 1.08997 * 109.47211 * 59.99845 * 23 22 21 44 44 H 1.08998 * 109.46715 * 180.02562 * 23 22 21 45 45 H 1.07996 * 120.00068 * 359.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1415 2.0639 1.1807 5 1 2.4790 1.5504 2.0687 6 6 1.8268 3.4147 1.2374 7 7 1.0519 3.9491 0.3175 8 14 2.5032 4.4740 2.6193 9 1 3.8088 5.0497 2.2082 10 1 1.5484 5.5727 2.9135 11 1 2.6900 3.6417 3.8350 12 6 2.3750 2.0321 -1.2631 13 6 3.8309 1.7837 -1.5625 14 6 4.7896 2.6701 -1.1080 15 6 6.1269 2.4438 -1.3752 16 6 6.5080 1.3323 -2.1099 17 8 7.8227 1.1114 -2.3788 18 6 8.7471 2.1219 -1.9708 19 6 9.1181 1.9105 -0.5016 20 6 10.0085 2.0370 -2.8326 21 6 5.5427 0.4432 -2.5722 22 8 5.9119 -0.6493 -3.2932 23 6 4.8671 -1.5186 -3.7347 24 6 4.2044 0.6730 -2.2960 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.8324 4.8931 0.3569 31 1 1.7637 1.6234 -2.0676 32 1 2.1987 3.1046 -1.1816 33 1 4.4933 3.5393 -0.5395 34 1 6.8741 3.1356 -1.0156 35 1 8.2894 3.1035 -2.0924 36 1 9.8228 2.6816 -0.1903 37 1 8.2194 1.9710 0.1124 38 1 9.5758 0.9289 -0.3800 39 1 9.7443 2.1876 -3.8792 40 1 10.7138 2.8076 -2.5211 41 1 10.4663 1.0553 -2.7109 42 1 4.3278 -1.9065 -2.8706 43 1 4.1793 -0.9647 -4.3736 44 1 5.2975 -2.3478 -4.2962 45 1 3.4533 -0.0157 -2.6534 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:25 Heat of formation + Delta-G solvation = -51.408729 kcal Electronic energy + Delta-G solvation = -24463.498675 eV Core-core repulsion = 21060.801986 eV Total energy + Delta-G solvation = -3402.696689 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53608 -39.64944 -38.62570 -37.00534 -34.12808 -33.75115 -32.11802 -31.04698 -30.07172 -28.30761 -28.16704 -26.94315 -25.26219 -23.88853 -22.90893 -21.82893 -21.45933 -19.48701 -18.65881 -17.89761 -17.38841 -16.81471 -16.67052 -16.11285 -15.79377 -15.71191 -15.67516 -15.46368 -15.13771 -14.40474 -14.27162 -14.17487 -13.78536 -13.55704 -13.26329 -13.16782 -13.05281 -12.89617 -12.82865 -12.73872 -12.56364 -12.34929 -12.28464 -12.15352 -11.89597 -11.81084 -11.78107 -11.61966 -11.52889 -11.40201 -10.53411 -9.56317 -8.64030 -8.54290 -7.81806 -5.42188 0.41201 0.58041 1.44251 1.47387 1.54535 2.30159 2.42187 2.50869 2.82505 3.27369 3.85421 3.86370 3.89577 4.00821 4.12561 4.17524 4.18830 4.37632 4.42804 4.45326 4.48694 4.58055 4.65374 4.70779 4.75015 4.78117 4.82276 4.87847 4.89063 4.91958 4.99972 5.08568 5.20627 5.27086 5.31009 5.33511 5.42060 5.55997 5.62882 5.76405 5.83296 5.96671 6.22151 6.50194 6.72513 7.18447 7.86367 8.40199 9.15198 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.005467 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.919789 B = 5120.246247 C = 6670.439780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.139 3.861 3 N -0.590 5.590 4 C -0.258 4.258 5 H 0.048 0.952 6 C -0.025 4.025 7 N -0.912 5.912 8 Si 0.944 3.056 9 H -0.282 1.282 10 H -0.293 1.293 11 H -0.274 1.274 12 C 0.185 3.815 13 C -0.082 4.082 14 C -0.112 4.112 15 C -0.170 4.170 16 C 0.078 3.922 17 O -0.318 6.318 18 C 0.064 3.936 19 C -0.177 4.177 20 C -0.140 4.140 21 C 0.084 3.916 22 O -0.327 6.327 23 C 0.020 3.980 24 C -0.166 4.166 25 H 0.066 0.934 26 H 0.027 0.973 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.252 0.748 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.147 0.853 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.123 0.877 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.985 -6.052 -7.550 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.014 3.986 3 N -0.311 5.311 4 C -0.389 4.389 5 H 0.065 0.935 6 C -0.223 4.223 7 N -0.555 5.555 8 Si 0.773 3.227 9 H -0.208 1.208 10 H -0.219 1.219 11 H -0.199 1.199 12 C 0.060 3.940 13 C -0.085 4.085 14 C -0.132 4.132 15 C -0.188 4.188 16 C 0.033 3.967 17 O -0.233 6.233 18 C 0.008 3.992 19 C -0.235 4.235 20 C -0.197 4.197 21 C 0.039 3.961 22 O -0.242 6.242 23 C -0.074 4.074 24 C -0.186 4.186 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.165 0.835 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.141 0.859 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 13.170 -6.146 -7.702 16.448 hybrid contribution -0.430 0.981 1.043 1.495 sum 12.740 -5.165 -6.659 15.275 Atomic orbital electron populations 1.22096 0.98593 1.00004 1.00091 1.20988 0.92682 0.85963 0.98960 1.43948 1.73486 1.10964 1.02694 1.19109 1.37666 0.92715 0.89413 0.93460 1.25669 0.97345 0.99754 0.99525 1.70082 1.35638 1.12267 1.37538 0.85637 0.77978 0.78798 0.80319 1.20836 1.21950 1.19888 1.19750 0.87275 1.00435 0.86579 1.20766 0.98775 0.93851 0.95135 1.20756 0.92296 0.99946 1.00164 1.21156 0.97009 0.98207 1.02477 1.18182 0.83365 0.95116 1.00042 1.86150 1.12892 1.46413 1.77869 1.22712 0.89927 0.90784 0.95736 1.22374 1.02342 1.03733 0.95017 1.21836 0.94604 1.03880 0.99404 1.18342 0.91337 0.89183 0.97275 1.86083 1.36631 1.33798 1.67642 1.23285 0.91017 0.93288 0.99840 1.21008 0.93607 1.00033 1.03929 0.91489 0.95386 0.94742 0.92653 0.94589 0.93879 0.94467 0.90877 0.87768 0.83513 0.90901 0.88711 0.93497 0.91699 0.92040 0.88160 0.91640 0.92568 0.92114 0.85917 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.80 10.21 71.98 0.73 -5.07 16 2 C 0.14 5.77 6.40 86.38 0.55 6.33 16 3 N -0.59 -28.98 2.42 -706.36 -1.71 -30.69 16 4 C -0.26 -14.01 9.46 84.03 0.79 -13.21 16 5 H 0.05 2.63 7.91 -2.91 -0.02 2.60 16 6 C -0.03 -1.36 4.98 84.86 0.42 -0.94 16 7 N -0.91 -51.82 11.43 21.65 0.25 -51.57 16 8 Si 0.94 44.00 29.60 68.60 2.03 46.04 16 9 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.19 8.67 5.39 85.63 0.46 9.14 16 13 C -0.08 -3.44 5.46 -19.86 -0.11 -3.55 16 14 C -0.11 -4.64 9.69 22.27 0.22 -4.42 16 15 C -0.17 -6.02 8.22 22.35 0.18 -5.83 16 16 C 0.08 2.78 6.61 22.57 0.15 2.93 16 17 O -0.32 -10.19 9.59 -79.64 -0.76 -10.95 16 18 C 0.06 1.51 2.85 30.59 0.09 1.60 16 19 C -0.18 -3.80 9.16 71.98 0.66 -3.14 16 20 C -0.14 -2.44 9.56 71.98 0.69 -1.75 16 21 C 0.08 3.00 6.70 22.57 0.15 3.15 16 22 O -0.33 -10.53 10.28 -79.70 -0.82 -11.35 16 23 C 0.02 0.45 9.81 113.37 1.11 1.56 16 24 C -0.17 -6.06 8.69 22.35 0.19 -5.86 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 2.02 8.03 -2.39 -0.02 2.00 16 29 H 0.04 1.49 8.08 -2.38 -0.02 1.47 16 30 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.04 1.64 8.01 -2.39 -0.02 1.62 16 32 H 0.07 3.91 5.44 -2.39 -0.01 3.90 16 33 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 34 H 0.15 4.41 5.41 -2.91 -0.02 4.39 16 35 H 0.07 1.67 6.34 -2.39 -0.02 1.65 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.19 6.86 -2.38 -0.02 1.17 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 1.22 7.66 -2.39 -0.02 1.20 16 43 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 44 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.14 4.52 6.30 -2.91 -0.02 4.50 16 Total: -1.00 -64.47 365.16 6.24 -58.23 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.96 Total: 19.38 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 6.30 Total: -19.08 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -1.46 Total: -82.26 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -1.58 Total: -22.30 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.04 kcal Total: -64.47 6.24 -58.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.818 kcal (2) G-P(sol) polarization free energy of solvation -64.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds