Wall clock time and date at job start Tue Mar 31 2020 06:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42906 * 109.46744 * 2 1 4 4 C 1.35998 * 116.99991 * 179.97438 * 3 2 1 5 5 C 1.38576 * 120.06925 * 0.28325 * 4 3 2 6 6 C 1.38237 * 119.99276 * 180.25319 * 5 4 3 7 7 C 1.50705 * 119.92308 * 179.76609 * 6 5 4 8 8 N 1.46898 * 109.46881 * 269.72087 * 7 6 5 9 9 C 1.46896 * 111.00178 * 66.04709 * 8 7 6 10 10 C 1.46903 * 110.99849 * 190.00038 * 8 7 6 11 11 H 1.09003 * 109.46808 * 300.00462 * 10 8 7 12 12 C 1.53000 * 109.47120 * 60.00056 * 10 8 7 13 13 C 1.50694 * 109.47066 * 180.02562 * 10 8 7 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 10 8 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 8 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.38249 * 120.15085 * 359.48509 * 6 5 4 22 22 C 1.38241 * 120.14628 * 0.23680 * 21 6 5 23 23 C 1.38567 * 119.99659 * 0.02562 * 22 21 6 24 24 O 1.36005 * 120.07211 * 179.97438 * 23 22 21 25 25 C 1.42901 * 116.99844 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46781 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47456 * 299.99659 * 1 2 3 28 28 H 1.08996 * 109.46962 * 60.00045 * 1 2 3 29 29 H 1.08997 * 109.47456 * 240.00341 * 2 1 3 30 30 H 1.08996 * 109.46962 * 119.99954 * 2 1 3 31 31 H 1.07992 * 119.99964 * 359.97438 * 5 4 3 32 32 H 1.09005 * 109.46912 * 149.72307 * 7 6 5 33 33 H 1.08999 * 109.47231 * 29.72005 * 7 6 5 34 34 H 1.09000 * 109.47187 * 183.95237 * 9 8 7 35 35 H 1.08996 * 109.47272 * 303.95406 * 9 8 7 36 36 H 1.09005 * 109.47145 * 63.94894 * 9 8 7 37 37 H 1.09007 * 109.47356 * 300.00024 * 12 10 8 38 38 H 1.09000 * 109.47156 * 59.99749 * 12 10 8 39 39 H 1.08997 * 109.47359 * 180.02562 * 12 10 8 40 40 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 41 41 H 1.08005 * 119.93215 * 180.25572 * 21 6 5 42 42 H 1.07999 * 120.00260 * 180.02562 * 22 21 6 43 43 H 1.08999 * 109.46990 * 60.00140 * 25 24 23 44 44 H 1.08994 * 109.47327 * 179.97438 * 25 24 23 45 45 H 1.09000 * 109.47578 * 300.00196 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.2001 0.4278 -0.0049 6 6 5.5703 0.6108 0.0010 7 6 6.4884 -0.5844 0.0004 8 7 6.7867 -0.9732 1.3852 9 6 5.5800 -1.4599 2.0670 10 6 7.8582 -1.9771 1.4309 11 1 7.5490 -2.8639 0.8776 12 6 9.1263 -1.3987 0.7997 13 6 8.1354 -2.3510 2.8642 14 1 7.5724 -1.8889 3.6615 15 6 9.1088 -3.2825 3.1577 16 7 9.7949 -3.8450 2.1868 17 14 9.4529 -3.7454 4.9344 18 1 10.5360 -4.7604 4.9806 19 1 9.8737 -2.5372 5.6882 20 1 8.2223 -4.3073 5.5468 21 6 6.1003 1.8876 0.0015 22 6 5.2624 2.9871 0.0011 23 6 3.8880 2.8107 0.0007 24 8 3.0622 3.8914 0.0008 25 6 3.6800 5.1799 0.0008 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7886 -0.5707 -0.0091 32 1 7.4155 -0.3300 -0.5133 33 1 6.0039 -1.4144 -0.5137 34 1 5.8134 -1.6747 3.1098 35 1 4.8026 -0.6974 2.0183 36 1 5.2283 -2.3688 1.5787 37 1 8.9254 -1.1285 -0.2370 38 1 9.4354 -0.5118 1.3529 39 1 9.9212 -2.1437 0.8332 40 1 10.4798 -4.5000 2.3934 41 1 7.1714 2.0265 0.0019 42 1 5.6789 3.9836 0.0011 43 1 4.3003 5.2854 -0.8893 44 1 2.9105 5.9518 0.0004 45 1 4.3006 5.2855 0.8907 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:41 Heat of formation + Delta-G solvation = -42.127114 kcal Electronic energy + Delta-G solvation = -23964.603311 eV Core-core repulsion = 20562.309103 eV Total energy + Delta-G solvation = -3402.294208 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48784 -38.47195 -37.80305 -36.07473 -32.90965 -31.95421 -30.62511 -29.65075 -28.93915 -27.77371 -26.19021 -24.62444 -23.84845 -23.24402 -21.54592 -20.99227 -19.40432 -18.28395 -17.07453 -16.52449 -16.24116 -16.20115 -15.48362 -15.17608 -14.61243 -14.29216 -14.16036 -14.04044 -14.01844 -13.20936 -13.08109 -12.91457 -12.65418 -12.35784 -12.10977 -12.02897 -11.84084 -11.55712 -11.17528 -11.13762 -11.07001 -10.93102 -10.86833 -10.76442 -10.61445 -10.41232 -10.11865 -10.02953 -9.80429 -8.88563 -8.53567 -8.41084 -7.60542 -7.15893 -6.01231 -4.05657 1.44513 1.63288 3.22929 3.31423 3.32203 3.36414 3.39625 3.87037 4.41786 4.81043 4.85085 4.91239 5.02123 5.07507 5.09911 5.16310 5.21316 5.26056 5.34174 5.38556 5.44115 5.52002 5.64252 5.68550 5.73327 5.88622 6.02343 6.15732 6.28036 6.33026 6.39908 6.45034 6.77389 6.81122 6.86635 6.94000 7.04496 7.12419 7.15237 7.51208 7.68126 7.71769 7.83002 8.20209 8.32193 8.59684 9.00651 9.59289 11.05523 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.003682 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.413839 B = 7603.332640 C = 8336.668994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.309 6.309 4 C 0.098 3.902 5 C -0.166 4.166 6 C -0.054 4.054 7 C 0.086 3.914 8 N -0.529 5.529 9 C 0.035 3.965 10 C 0.212 3.788 11 H -0.002 1.002 12 C -0.134 4.134 13 C -0.503 4.503 14 H 0.063 0.937 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.288 1.288 19 H -0.276 1.276 20 H -0.278 1.278 21 C -0.097 4.097 22 C -0.172 4.172 23 C 0.085 3.915 24 O -0.311 6.311 25 C 0.028 3.972 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.029 0.971 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.035 0.965 39 H 0.085 0.915 40 H 0.261 0.739 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.052 0.948 44 H 0.095 0.905 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.394 11.926 -6.616 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.224 6.224 4 C 0.053 3.947 5 C -0.185 4.185 6 C -0.055 4.055 7 C -0.042 4.042 8 N -0.254 5.254 9 C -0.113 4.113 10 C 0.106 3.894 11 H 0.016 0.984 12 C -0.192 4.192 13 C -0.542 4.542 14 H 0.081 0.919 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.214 1.214 19 H -0.202 1.202 20 H -0.204 1.204 21 C -0.116 4.116 22 C -0.191 4.191 23 C 0.040 3.960 24 O -0.225 6.225 25 C -0.067 4.067 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.054 0.946 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.430 12.328 -6.390 19.318 hybrid contribution 0.336 -1.123 0.565 1.301 sum -13.094 11.205 -5.825 18.192 Atomic orbital electron populations 1.21745 0.92940 1.02619 1.03332 1.22759 0.95692 0.82381 1.01451 1.86121 1.18355 1.28564 1.89312 1.18115 0.82814 0.91053 1.02735 1.20995 0.93607 0.97191 1.06755 1.19710 0.92749 0.95411 0.97608 1.21103 0.97430 0.92951 0.92673 1.62162 1.08055 1.43719 1.11473 1.22265 0.92006 0.96367 1.00669 1.19267 0.86539 0.86984 0.96582 0.98445 1.21866 1.01281 1.00915 0.95113 1.21120 1.19220 1.22127 0.91720 0.91910 1.24926 0.95905 0.96080 0.97283 1.69882 1.23762 1.28443 1.31250 0.86584 0.77809 0.78154 0.84997 1.21365 1.20206 1.20367 1.20762 0.99873 0.91025 0.99934 1.21014 0.91044 1.00086 1.06919 1.18166 0.88976 0.85044 1.03807 1.86134 1.33947 1.12901 1.89527 1.22998 0.99569 0.82992 1.01155 0.90521 0.91597 0.91711 0.92245 0.92000 0.85192 0.89692 0.95335 0.90692 0.93585 0.97230 0.97261 0.94610 0.89621 0.92942 0.85381 0.85121 0.92946 0.88639 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.59 5.46 37.16 0.20 0.79 16 3 O -0.31 -4.56 9.92 -34.24 -0.34 -4.90 16 4 C 0.10 1.52 6.70 -39.12 -0.26 1.26 16 5 C -0.17 -2.55 6.90 -39.46 -0.27 -2.83 16 6 C -0.05 -0.88 4.88 -104.62 -0.51 -1.39 16 7 C 0.09 1.58 4.93 -4.97 -0.02 1.56 16 8 N -0.53 -11.43 4.61 -237.73 -1.10 -12.53 16 9 C 0.04 0.71 8.90 60.06 0.53 1.25 16 10 C 0.21 5.33 2.06 -68.87 -0.14 5.19 16 11 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 12 C -0.13 -3.22 8.76 37.16 0.33 -2.90 16 13 C -0.50 -13.74 7.93 -34.44 -0.27 -14.01 16 14 H 0.06 1.71 6.39 -52.49 -0.34 1.38 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -25.36 11.32 55.43 0.63 -24.73 16 17 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 C -0.10 -1.47 9.69 -39.58 -0.38 -1.85 16 22 C -0.17 -2.35 9.04 -39.46 -0.36 -2.71 16 23 C 0.09 1.27 6.70 -39.12 -0.26 1.01 16 24 O -0.31 -4.35 10.28 -34.26 -0.35 -4.70 16 25 C 0.03 0.26 9.81 101.05 0.99 1.25 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 30 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 31 H 0.13 1.85 6.24 -52.49 -0.33 1.52 16 32 H 0.08 1.55 5.77 -51.93 -0.30 1.25 16 33 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 34 H 0.07 1.61 6.23 -51.93 -0.32 1.29 16 35 H 0.05 0.83 5.90 -51.93 -0.31 0.52 16 36 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.13 1.83 8.06 -52.48 -0.42 1.40 16 42 H 0.13 1.42 6.30 -52.49 -0.33 1.09 16 43 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 LS Contribution 355.54 15.07 5.36 5.36 Total: -1.00 -30.56 355.54 -8.06 -38.62 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.09 Total: -0.61 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -0.14 Total: -12.78 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.47 Total: -37.26 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.69 Total: -9.60 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.56 -8.06 -38.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.509 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds