Wall clock time and date at job start Tue Mar 31 2020 06:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42906 * 109.46744 * 2 1 4 4 C 1.35998 * 116.99991 * 179.97438 * 3 2 1 5 5 C 1.38576 * 120.06925 * 0.28325 * 4 3 2 6 6 C 1.38237 * 119.99276 * 180.25319 * 5 4 3 7 7 C 1.50705 * 119.92308 * 179.76609 * 6 5 4 8 8 N 1.46898 * 109.46881 * 269.72087 * 7 6 5 9 9 C 1.46896 * 111.00178 * 66.04709 * 8 7 6 10 10 C 1.46903 * 110.99849 * 190.00038 * 8 7 6 11 11 H 1.09003 * 109.46808 * 300.00462 * 10 8 7 12 12 C 1.53000 * 109.47120 * 60.00056 * 10 8 7 13 13 C 1.50694 * 109.47066 * 180.02562 * 10 8 7 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 10 8 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 8 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.38249 * 120.15085 * 359.48509 * 6 5 4 22 22 C 1.38241 * 120.14628 * 0.23680 * 21 6 5 23 23 C 1.38567 * 119.99659 * 0.02562 * 22 21 6 24 24 O 1.36005 * 120.07211 * 179.97438 * 23 22 21 25 25 C 1.42901 * 116.99844 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46781 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47456 * 299.99659 * 1 2 3 28 28 H 1.08996 * 109.46962 * 60.00045 * 1 2 3 29 29 H 1.08997 * 109.47456 * 240.00341 * 2 1 3 30 30 H 1.08996 * 109.46962 * 119.99954 * 2 1 3 31 31 H 1.07992 * 119.99964 * 359.97438 * 5 4 3 32 32 H 1.09005 * 109.46912 * 149.72307 * 7 6 5 33 33 H 1.08999 * 109.47231 * 29.72005 * 7 6 5 34 34 H 1.09000 * 109.47187 * 183.95237 * 9 8 7 35 35 H 1.08996 * 109.47272 * 303.95406 * 9 8 7 36 36 H 1.09005 * 109.47145 * 63.94894 * 9 8 7 37 37 H 1.09007 * 109.47356 * 300.00024 * 12 10 8 38 38 H 1.09000 * 109.47156 * 59.99749 * 12 10 8 39 39 H 1.08997 * 109.47359 * 180.02562 * 12 10 8 40 40 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 41 41 H 1.08005 * 119.93215 * 180.25572 * 21 6 5 42 42 H 1.07999 * 120.00260 * 180.02562 * 22 21 6 43 43 H 1.08999 * 109.46990 * 60.00140 * 25 24 23 44 44 H 1.08994 * 109.47327 * 179.97438 * 25 24 23 45 45 H 1.09000 * 109.47578 * 300.00196 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.2001 0.4278 -0.0049 6 6 5.5703 0.6108 0.0010 7 6 6.4884 -0.5844 0.0004 8 7 6.7867 -0.9732 1.3852 9 6 5.5800 -1.4599 2.0670 10 6 7.8582 -1.9771 1.4309 11 1 7.5490 -2.8639 0.8776 12 6 9.1263 -1.3987 0.7997 13 6 8.1354 -2.3510 2.8642 14 1 7.5724 -1.8889 3.6615 15 6 9.1088 -3.2825 3.1577 16 7 9.7949 -3.8450 2.1868 17 14 9.4529 -3.7454 4.9344 18 1 10.5360 -4.7604 4.9806 19 1 9.8737 -2.5372 5.6882 20 1 8.2223 -4.3073 5.5468 21 6 6.1003 1.8876 0.0015 22 6 5.2624 2.9871 0.0011 23 6 3.8880 2.8107 0.0007 24 8 3.0622 3.8914 0.0008 25 6 3.6800 5.1799 0.0008 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7886 -0.5707 -0.0091 32 1 7.4155 -0.3300 -0.5133 33 1 6.0039 -1.4144 -0.5137 34 1 5.8134 -1.6747 3.1098 35 1 4.8026 -0.6974 2.0183 36 1 5.2283 -2.3688 1.5787 37 1 8.9254 -1.1285 -0.2370 38 1 9.4354 -0.5118 1.3529 39 1 9.9212 -2.1437 0.8332 40 1 10.4798 -4.5000 2.3934 41 1 7.1714 2.0265 0.0019 42 1 5.6789 3.9836 0.0011 43 1 4.3003 5.2854 -0.8893 44 1 2.9105 5.9518 0.0004 45 1 4.3006 5.2855 0.8907 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:40 Heat of formation + Delta-G solvation = -60.217314 kcal Electronic energy + Delta-G solvation = -23965.387761 eV Core-core repulsion = 20562.309103 eV Total energy + Delta-G solvation = -3403.078658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58015 -39.47799 -39.23955 -37.49466 -34.81614 -32.88781 -32.03122 -30.73220 -30.70997 -28.85508 -27.62594 -26.40864 -24.89714 -24.74277 -22.68233 -22.21430 -21.15444 -19.35739 -18.42380 -18.04685 -17.54906 -17.23318 -16.99072 -16.35511 -15.87433 -15.74466 -15.64676 -15.56506 -15.14353 -14.55424 -14.30478 -14.11970 -13.99184 -13.58850 -13.39421 -13.04830 -13.02730 -12.91749 -12.82628 -12.64043 -12.60309 -12.44091 -12.15337 -12.03628 -12.01637 -11.89464 -11.82142 -11.60368 -11.53658 -10.87473 -10.50308 -9.65830 -8.94737 -8.71341 -8.10064 -6.21881 0.30744 0.46281 1.43239 1.44690 1.52272 2.25623 2.39373 2.42846 2.69792 3.18148 3.52545 3.80925 3.87429 4.04454 4.07548 4.12922 4.19767 4.35817 4.42945 4.45418 4.47722 4.52932 4.55765 4.67398 4.72972 4.76254 4.77628 4.87269 4.94108 4.97839 5.04245 5.08183 5.12991 5.24039 5.26109 5.31723 5.51970 5.69837 5.72637 5.73993 5.80500 6.14480 6.27351 6.39468 6.64296 6.72936 6.92241 7.47154 8.95403 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.003682 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.413839 B = 7603.332640 C = 8336.668994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.044 3.956 3 O -0.323 6.323 4 C 0.085 3.915 5 C -0.167 4.167 6 C -0.071 4.071 7 C 0.092 3.908 8 N -0.535 5.535 9 C 0.042 3.958 10 C 0.216 3.784 11 H -0.036 1.036 12 C -0.122 4.122 13 C -0.520 4.520 14 H 0.058 0.942 15 C 0.013 3.987 16 N -0.920 5.920 17 Si 0.958 3.042 18 H -0.284 1.284 19 H -0.272 1.272 20 H -0.273 1.273 21 C -0.103 4.103 22 C -0.165 4.165 23 C 0.080 3.920 24 O -0.330 6.330 25 C 0.018 3.982 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.027 0.973 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.008 0.992 37 H 0.033 0.967 38 H 0.032 0.968 39 H 0.060 0.940 40 H 0.262 0.738 41 H 0.135 0.865 42 H 0.161 0.839 43 H 0.066 0.934 44 H 0.117 0.883 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.218 13.361 -6.386 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 O -0.238 6.238 4 C 0.039 3.961 5 C -0.186 4.186 6 C -0.072 4.072 7 C -0.036 4.036 8 N -0.260 5.260 9 C -0.106 4.106 10 C 0.109 3.891 11 H -0.019 1.019 12 C -0.180 4.180 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.186 4.186 16 N -0.560 5.560 17 Si 0.784 3.216 18 H -0.209 1.209 19 H -0.197 1.197 20 H -0.198 1.198 21 C -0.121 4.121 22 C -0.183 4.183 23 C 0.035 3.965 24 O -0.244 6.244 25 C -0.077 4.077 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.103 0.897 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.153 0.847 42 H 0.178 0.822 43 H 0.085 0.915 44 H 0.136 0.864 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.273 13.780 -6.165 20.775 hybrid contribution 0.500 -1.476 0.437 1.618 sum -13.773 12.304 -5.729 19.336 Atomic orbital electron populations 1.21767 0.91029 1.04064 1.03280 1.23025 0.97248 0.81143 1.01705 1.86115 1.17964 1.30467 1.89255 1.18320 0.83254 0.91509 1.02994 1.20996 0.93265 0.97649 1.06738 1.19545 0.92753 0.95044 0.99859 1.21053 0.98008 0.93835 0.90656 1.62092 1.07968 1.42149 1.13748 1.22192 0.91997 0.97008 0.99396 1.19073 0.88057 0.86723 0.95209 1.01871 1.21676 0.99967 0.99760 0.96583 1.21398 1.19328 1.22417 0.92710 0.92404 1.25679 0.95723 0.96022 1.01131 1.70009 1.24107 1.28797 1.33046 0.85612 0.77758 0.77916 0.80346 1.20923 1.19746 1.19781 1.20914 1.00515 0.90962 0.99755 1.21259 0.90419 1.01043 1.05597 1.18419 0.89596 0.85445 1.03086 1.86117 1.34896 1.14136 1.89289 1.23338 1.00791 0.81297 1.02236 0.88318 0.91822 0.91552 0.91624 0.92091 0.84700 0.89736 0.95477 0.92408 0.91459 0.97380 0.94792 0.94856 0.92122 0.92924 0.84700 0.82171 0.91538 0.86429 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 10.28 71.98 0.74 -1.58 16 2 C 0.04 0.94 5.46 71.98 0.39 1.33 16 3 O -0.32 -9.26 9.92 -79.66 -0.79 -10.05 16 4 C 0.08 2.54 6.70 22.57 0.15 2.69 16 5 C -0.17 -5.01 6.90 22.35 0.15 -4.86 16 6 C -0.07 -2.27 4.88 -19.86 -0.10 -2.37 16 7 C 0.09 3.35 4.93 85.56 0.42 3.77 16 8 N -0.54 -23.15 4.61 -906.04 -4.18 -27.33 16 9 C 0.04 1.71 8.90 127.69 1.14 2.85 16 10 C 0.22 11.04 2.06 44.17 0.09 11.13 16 11 H -0.04 -2.06 8.14 -2.39 -0.02 -2.08 16 12 C -0.12 -5.92 8.76 71.98 0.63 -5.29 16 13 C -0.52 -28.74 7.93 25.60 0.20 -28.53 16 14 H 0.06 3.19 6.39 -2.91 -0.02 3.17 16 15 C 0.01 0.73 5.30 84.66 0.45 1.17 16 16 N -0.92 -52.87 11.32 21.45 0.24 -52.62 16 17 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 C -0.10 -2.94 9.69 22.27 0.22 -2.73 16 22 C -0.16 -4.14 9.04 22.35 0.20 -3.94 16 23 C 0.08 2.26 6.70 22.57 0.15 2.42 16 24 O -0.33 -8.59 10.28 -79.73 -0.82 -9.41 16 25 C 0.02 0.27 9.81 113.37 1.11 1.39 16 26 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.31 7.65 -2.39 -0.02 1.30 16 30 H 0.06 1.31 7.67 -2.39 -0.02 1.29 16 31 H 0.14 3.77 6.24 -2.91 -0.02 3.76 16 32 H 0.08 3.04 5.77 -2.38 -0.01 3.02 16 33 H 0.03 0.99 8.06 -2.39 -0.02 0.97 16 34 H 0.06 2.50 6.23 -2.39 -0.01 2.49 16 35 H 0.07 2.40 5.90 -2.39 -0.01 2.38 16 36 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 37 H 0.03 1.43 6.20 -2.38 -0.01 1.41 16 38 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 40 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 42 H 0.16 2.95 6.30 -2.91 -0.02 2.93 16 43 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 44 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 Total: -1.00 -65.44 355.54 3.41 -62.04 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.97 Total: 14.17 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 5.96 Total: -22.54 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -3.94 Total: -79.96 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -1.61 Total: -19.46 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -65.44 3.41 -62.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.821 kcal (2) G-P(sol) polarization free energy of solvation -65.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds