Wall clock time and date at job start Tue Mar 31 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47101 * 2 1 4 4 C 1.35990 * 116.99979 * 180.02562 * 3 2 1 5 5 C 1.38566 * 120.07645 * 0.02562 * 4 3 2 6 6 C 1.38237 * 120.00165 * 179.70488 * 5 4 3 7 7 C 1.50704 * 119.92829 * 180.30243 * 6 5 4 8 8 N 1.46897 * 109.46838 * 270.25425 * 7 6 5 9 9 C 1.46901 * 111.00028 * 66.04780 * 8 7 6 10 10 C 1.46906 * 110.99913 * 190.00116 * 8 7 6 11 11 H 1.08999 * 109.46860 * 54.99487 * 10 8 7 12 12 C 1.52998 * 109.46700 * 295.00188 * 10 8 7 13 13 C 1.50697 * 109.47076 * 174.99878 * 10 8 7 14 14 H 1.08004 * 120.00200 * 359.97438 * 13 10 8 15 15 C 1.37876 * 119.99907 * 179.97438 * 13 10 8 16 16 N 1.31512 * 119.99995 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00102 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47130 * 60.00028 * 17 15 13 19 19 H 1.48504 * 109.47275 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47147 * 299.99804 * 17 15 13 21 21 C 1.38252 * 120.14647 * 0.55565 * 6 5 4 22 22 C 1.38243 * 120.14586 * 359.44595 * 21 6 5 23 23 C 1.38563 * 119.99976 * 0.27718 * 22 21 6 24 24 O 1.35992 * 120.07805 * 179.97438 * 23 22 21 25 25 C 1.42904 * 116.99677 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47181 * 299.99851 * 1 2 3 28 28 H 1.09002 * 109.47664 * 59.99970 * 1 2 3 29 29 H 1.08998 * 109.46710 * 240.00572 * 2 1 3 30 30 H 1.08991 * 109.47317 * 120.00360 * 2 1 3 31 31 H 1.07998 * 119.99688 * 0.02562 * 5 4 3 32 32 H 1.08996 * 109.46795 * 30.25500 * 7 6 5 33 33 H 1.09002 * 109.46824 * 150.25307 * 7 6 5 34 34 H 1.08997 * 109.47287 * 59.99937 * 9 8 7 35 35 H 1.08998 * 109.46853 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.46899 * 299.99358 * 9 8 7 37 37 H 1.09001 * 109.47146 * 180.02562 * 12 10 8 38 38 H 1.09007 * 109.46966 * 299.99576 * 12 10 8 39 39 H 1.09000 * 109.47464 * 60.00044 * 12 10 8 40 40 H 0.97004 * 120.00448 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.93071 * 179.72697 * 21 6 5 42 42 H 1.07997 * 120.00101 * 180.29797 * 22 21 6 43 43 H 1.09005 * 109.46487 * 60.00623 * 25 24 23 44 44 H 1.09001 * 109.47105 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.47212 * 300.00645 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.2000 0.4277 -0.0016 6 6 5.5702 0.6106 -0.0083 7 6 6.4883 -0.5845 -0.0163 8 7 6.7890 -0.9802 1.3660 9 6 5.5833 -1.4702 2.0474 10 6 7.8606 -1.9843 1.4049 11 1 8.7349 -1.6032 0.8773 12 6 7.3788 -3.2706 0.7308 13 6 8.2254 -2.2744 2.8380 14 1 7.7128 -1.7636 3.6398 15 6 9.2135 -3.1919 3.1257 16 7 9.8373 -3.8142 2.1495 17 14 9.6652 -3.5519 4.9021 18 1 8.4737 -4.0710 5.6204 19 1 10.7486 -4.5669 4.9414 20 1 10.1331 -2.3038 5.5567 21 6 6.1003 1.8875 -0.0024 22 6 5.2624 2.9870 -0.0013 23 6 3.8880 2.8108 -0.0003 24 8 3.0623 3.8913 0.0013 25 6 3.6801 5.1799 0.0025 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8932 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.7885 -0.5708 -0.0024 32 1 6.0029 -1.4119 -0.5338 33 1 7.4145 -0.3276 -0.5305 34 1 5.1907 -2.3357 1.5137 35 1 5.8341 -1.7559 3.0689 36 1 4.8305 -0.6821 2.0654 37 1 8.1737 -4.0158 0.7601 38 1 6.5044 -3.6517 1.2584 39 1 7.1150 -3.0607 -0.3057 40 1 10.5328 -4.4595 2.3518 41 1 7.1714 2.0263 -0.0032 42 1 5.6790 3.9834 -0.0015 43 1 4.3000 5.2863 -0.8878 44 1 2.9105 5.9518 0.0042 45 1 4.3010 5.2843 0.8922 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:43 Heat of formation + Delta-G solvation = -43.055726 kcal Electronic energy + Delta-G solvation = -23998.832882 eV Core-core repulsion = 20596.498407 eV Total energy + Delta-G solvation = -3402.334476 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48821 -38.47402 -37.87633 -36.20218 -32.87236 -31.95736 -30.67732 -29.66623 -28.39639 -27.64958 -26.07392 -25.15569 -23.91238 -23.48157 -21.53423 -20.99582 -19.26178 -18.26113 -17.06834 -16.46391 -16.24789 -16.11922 -15.48415 -15.20403 -14.61495 -14.31725 -14.29186 -14.12074 -13.71206 -13.25059 -13.02536 -12.96896 -12.65676 -12.47607 -12.08546 -12.03000 -11.74651 -11.50730 -11.20519 -11.11662 -10.98744 -10.97542 -10.87050 -10.75650 -10.59769 -10.54070 -10.42767 -10.01136 -9.79455 -8.89285 -8.52535 -8.38351 -7.61188 -7.12769 -6.00800 -4.04501 1.44759 1.63246 3.22997 3.31459 3.32883 3.37025 3.40282 3.87218 4.42643 4.81144 4.85078 4.91248 5.02186 5.08163 5.09935 5.16325 5.21298 5.29341 5.33995 5.38533 5.43986 5.52082 5.64391 5.68521 5.73270 5.88635 6.03017 6.15848 6.30114 6.33245 6.39520 6.45064 6.67262 6.81442 6.85047 6.90138 6.92797 7.11851 7.13039 7.48351 7.68263 7.71652 7.83319 8.11825 8.38604 8.59762 9.01244 9.60467 11.06236 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.003673 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.973069 B = 7621.447234 C = 8303.685076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.309 6.309 4 C 0.098 3.902 5 C -0.165 4.165 6 C -0.055 4.055 7 C 0.091 3.909 8 N -0.527 5.527 9 C 0.033 3.967 10 C 0.211 3.789 11 H 0.040 0.960 12 C -0.173 4.173 13 C -0.500 4.500 14 H 0.062 0.938 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.097 4.097 22 C -0.172 4.172 23 C 0.085 3.915 24 O -0.311 6.311 25 C 0.028 3.972 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.130 0.870 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.014 0.986 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.029 0.971 39 H 0.007 0.993 40 H 0.260 0.740 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.052 0.948 44 H 0.095 0.905 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.916 11.449 -6.549 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.224 6.224 4 C 0.053 3.947 5 C -0.185 4.185 6 C -0.056 4.056 7 C -0.037 4.037 8 N -0.251 5.251 9 C -0.116 4.116 10 C 0.105 3.895 11 H 0.058 0.942 12 C -0.232 4.232 13 C -0.538 4.538 14 H 0.080 0.920 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.724 3.276 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.116 4.116 22 C -0.191 4.191 23 C 0.040 3.960 24 O -0.225 6.225 25 C -0.067 4.067 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.032 0.968 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.048 0.952 39 H 0.026 0.974 40 H 0.070 0.930 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.953 11.864 -6.319 19.375 hybrid contribution 0.382 -1.122 0.533 1.300 sum -13.571 10.742 -5.785 18.249 Atomic orbital electron populations 1.21746 0.92944 1.02617 1.03333 1.22755 0.95688 0.82384 1.01448 1.86119 1.18358 1.28562 1.89313 1.18117 0.82817 0.91054 1.02761 1.20983 0.93598 0.97189 1.06681 1.19723 0.92788 0.95397 0.97672 1.21002 0.97138 0.92907 0.92666 1.62378 1.08291 1.42862 1.11543 1.22285 0.92211 0.96721 1.00373 1.19332 0.88160 0.85349 0.96705 0.94248 1.22410 1.01571 1.03657 0.95537 1.21082 1.19010 1.22174 0.91562 0.91980 1.24916 0.96100 0.95974 0.97239 1.69872 1.24902 1.27615 1.31067 0.86588 0.77965 0.77976 0.85031 1.20390 1.21405 1.20224 1.20771 0.99880 0.91033 0.99934 1.21013 0.91046 1.00092 1.06944 1.18170 0.88979 0.85043 1.03788 1.86132 1.33953 1.12904 1.89520 1.23001 0.99569 0.82989 1.01156 0.90524 0.91597 0.91709 0.92251 0.92004 0.85203 0.94786 0.90551 0.96758 0.90780 0.93743 0.89325 0.95155 0.97392 0.92964 0.85360 0.85124 0.92938 0.88639 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.59 5.46 37.16 0.20 0.80 16 3 O -0.31 -4.55 9.92 -34.21 -0.34 -4.89 16 4 C 0.10 1.51 6.70 -39.12 -0.26 1.25 16 5 C -0.17 -2.53 6.94 -39.46 -0.27 -2.81 16 6 C -0.05 -0.89 4.89 -104.61 -0.51 -1.41 16 7 C 0.09 1.65 4.55 -4.98 -0.02 1.63 16 8 N -0.53 -11.27 4.73 -237.73 -1.13 -12.40 16 9 C 0.03 0.65 8.36 60.07 0.50 1.15 16 10 C 0.21 5.23 2.34 -68.86 -0.16 5.07 16 11 H 0.04 1.07 8.03 -51.93 -0.42 0.65 16 12 C -0.17 -4.12 8.27 37.16 0.31 -3.81 16 13 C -0.50 -13.57 7.88 -34.44 -0.27 -13.84 16 14 H 0.06 1.70 6.77 -52.48 -0.36 1.34 16 15 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 16 N -0.90 -25.29 11.32 55.43 0.63 -24.66 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.10 -1.46 9.69 -39.57 -0.38 -1.85 16 22 C -0.17 -2.35 9.04 -39.46 -0.36 -2.71 16 23 C 0.09 1.28 6.70 -39.12 -0.26 1.01 16 24 O -0.31 -4.34 10.28 -34.22 -0.35 -4.70 16 25 C 0.03 0.26 9.81 101.05 0.99 1.25 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 30 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 31 H 0.13 1.85 6.25 -52.49 -0.33 1.52 16 32 H 0.03 0.61 6.88 -51.93 -0.36 0.26 16 33 H 0.08 1.37 7.94 -51.93 -0.41 0.96 16 34 H 0.01 0.27 6.51 -51.93 -0.34 -0.06 16 35 H 0.07 1.59 6.42 -51.93 -0.33 1.26 16 36 H 0.04 0.80 6.15 -51.93 -0.32 0.48 16 37 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 38 H 0.03 0.70 6.48 -51.92 -0.34 0.36 16 39 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.13 1.41 6.30 -52.49 -0.33 1.08 16 43 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -30.27 353.47 -8.13 -38.40 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.03 Total: 0.34 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -0.21 Total: -13.68 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: -0.50 Total: -37.06 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.69 Total: -9.59 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.27 -8.13 -38.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.654 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds