Wall clock time and date at job start Tue Mar 31 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47101 * 2 1 4 4 C 1.35990 * 116.99979 * 180.02562 * 3 2 1 5 5 C 1.38566 * 120.07645 * 0.02562 * 4 3 2 6 6 C 1.38237 * 120.00165 * 179.70488 * 5 4 3 7 7 C 1.50704 * 119.92829 * 180.30243 * 6 5 4 8 8 N 1.46897 * 109.46838 * 270.25425 * 7 6 5 9 9 C 1.46901 * 111.00028 * 66.04780 * 8 7 6 10 10 C 1.46906 * 110.99913 * 190.00116 * 8 7 6 11 11 H 1.08999 * 109.46860 * 54.99487 * 10 8 7 12 12 C 1.52998 * 109.46700 * 295.00188 * 10 8 7 13 13 C 1.50697 * 109.47076 * 174.99878 * 10 8 7 14 14 H 1.08004 * 120.00200 * 359.97438 * 13 10 8 15 15 C 1.37876 * 119.99907 * 179.97438 * 13 10 8 16 16 N 1.31512 * 119.99995 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00102 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47130 * 60.00028 * 17 15 13 19 19 H 1.48504 * 109.47275 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47147 * 299.99804 * 17 15 13 21 21 C 1.38252 * 120.14647 * 0.55565 * 6 5 4 22 22 C 1.38243 * 120.14586 * 359.44595 * 21 6 5 23 23 C 1.38563 * 119.99976 * 0.27718 * 22 21 6 24 24 O 1.35992 * 120.07805 * 179.97438 * 23 22 21 25 25 C 1.42904 * 116.99677 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47181 * 299.99851 * 1 2 3 28 28 H 1.09002 * 109.47664 * 59.99970 * 1 2 3 29 29 H 1.08998 * 109.46710 * 240.00572 * 2 1 3 30 30 H 1.08991 * 109.47317 * 120.00360 * 2 1 3 31 31 H 1.07998 * 119.99688 * 0.02562 * 5 4 3 32 32 H 1.08996 * 109.46795 * 30.25500 * 7 6 5 33 33 H 1.09002 * 109.46824 * 150.25307 * 7 6 5 34 34 H 1.08997 * 109.47287 * 59.99937 * 9 8 7 35 35 H 1.08998 * 109.46853 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.46899 * 299.99358 * 9 8 7 37 37 H 1.09001 * 109.47146 * 180.02562 * 12 10 8 38 38 H 1.09007 * 109.46966 * 299.99576 * 12 10 8 39 39 H 1.09000 * 109.47464 * 60.00044 * 12 10 8 40 40 H 0.97004 * 120.00448 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.93071 * 179.72697 * 21 6 5 42 42 H 1.07997 * 120.00101 * 180.29797 * 22 21 6 43 43 H 1.09005 * 109.46487 * 60.00623 * 25 24 23 44 44 H 1.09001 * 109.47105 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.47212 * 300.00645 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.2000 0.4277 -0.0016 6 6 5.5702 0.6106 -0.0083 7 6 6.4883 -0.5845 -0.0163 8 7 6.7890 -0.9802 1.3660 9 6 5.5833 -1.4702 2.0474 10 6 7.8606 -1.9843 1.4049 11 1 8.7349 -1.6032 0.8773 12 6 7.3788 -3.2706 0.7308 13 6 8.2254 -2.2744 2.8380 14 1 7.7128 -1.7636 3.6398 15 6 9.2135 -3.1919 3.1257 16 7 9.8373 -3.8142 2.1495 17 14 9.6652 -3.5519 4.9021 18 1 8.4737 -4.0710 5.6204 19 1 10.7486 -4.5669 4.9414 20 1 10.1331 -2.3038 5.5567 21 6 6.1003 1.8875 -0.0024 22 6 5.2624 2.9870 -0.0013 23 6 3.8880 2.8108 -0.0003 24 8 3.0623 3.8913 0.0013 25 6 3.6801 5.1799 0.0025 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8932 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.7885 -0.5708 -0.0024 32 1 6.0029 -1.4119 -0.5338 33 1 7.4145 -0.3276 -0.5305 34 1 5.1907 -2.3357 1.5137 35 1 5.8341 -1.7559 3.0689 36 1 4.8305 -0.6821 2.0654 37 1 8.1737 -4.0158 0.7601 38 1 6.5044 -3.6517 1.2584 39 1 7.1150 -3.0607 -0.3057 40 1 10.5328 -4.4595 2.3518 41 1 7.1714 2.0263 -0.0032 42 1 5.6790 3.9834 -0.0015 43 1 4.3000 5.2863 -0.8878 44 1 2.9105 5.9518 0.0042 45 1 4.3010 5.2843 0.8922 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:42 Heat of formation + Delta-G solvation = -60.972336 kcal Electronic energy + Delta-G solvation = -23999.609805 eV Core-core repulsion = 20596.498407 eV Total energy + Delta-G solvation = -3403.111398 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.57828 -39.48739 -39.32864 -37.58119 -34.76908 -32.90212 -32.05229 -30.75588 -30.07978 -28.72973 -27.48402 -27.05819 -25.12781 -24.75925 -22.64077 -22.21140 -20.99585 -19.33646 -18.31629 -17.97969 -17.53835 -17.24927 -16.98768 -16.35475 -16.11818 -15.75201 -15.57097 -15.29260 -15.10809 -14.57457 -14.42610 -14.13143 -13.95443 -13.48101 -13.38471 -13.10824 -13.03812 -12.93297 -12.74703 -12.64717 -12.60924 -12.46759 -12.23242 -12.08625 -12.02476 -11.89692 -11.83411 -11.61027 -11.55152 -10.89991 -10.47608 -9.65832 -8.87758 -8.69193 -8.09049 -6.19808 0.31362 0.46497 1.44006 1.45181 1.52741 2.26141 2.39501 2.43973 2.70501 3.20047 3.56286 3.82001 3.88190 4.05243 4.07834 4.13340 4.20695 4.36511 4.43714 4.45112 4.47986 4.56263 4.56754 4.66105 4.73205 4.77028 4.78446 4.87315 4.90273 4.92737 4.94696 5.13283 5.16131 5.18382 5.25004 5.31431 5.55454 5.69387 5.72298 5.74472 5.80905 6.14758 6.20473 6.49198 6.64659 6.74373 6.93359 7.49269 8.96608 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.003673 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.973069 B = 7621.447234 C = 8303.685076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 O -0.323 6.323 4 C 0.084 3.916 5 C -0.165 4.165 6 C -0.072 4.072 7 C 0.097 3.903 8 N -0.537 5.537 9 C 0.042 3.958 10 C 0.215 3.785 11 H 0.010 0.990 12 C -0.158 4.158 13 C -0.515 4.515 14 H 0.055 0.945 15 C 0.013 3.987 16 N -0.920 5.920 17 Si 0.957 3.043 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.104 4.104 22 C -0.165 4.165 23 C 0.080 3.920 24 O -0.330 6.330 25 C 0.018 3.982 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.137 0.863 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.019 0.981 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.026 0.974 40 H 0.261 0.739 41 H 0.134 0.866 42 H 0.160 0.840 43 H 0.066 0.934 44 H 0.118 0.882 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.033 12.519 -6.336 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 O -0.238 6.238 4 C 0.039 3.961 5 C -0.185 4.185 6 C -0.073 4.073 7 C -0.031 4.031 8 N -0.260 5.260 9 C -0.107 4.107 10 C 0.108 3.892 11 H 0.027 0.973 12 C -0.218 4.218 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.185 4.185 16 N -0.560 5.560 17 Si 0.782 3.218 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.123 4.123 22 C -0.184 4.184 23 C 0.034 3.966 24 O -0.244 6.244 25 C -0.077 4.077 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.152 0.848 42 H 0.178 0.822 43 H 0.084 0.916 44 H 0.136 0.864 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.089 12.950 -6.110 20.802 hybrid contribution 0.657 -1.343 0.416 1.552 sum -14.432 11.607 -5.694 19.376 Atomic orbital electron populations 1.21769 0.91062 1.04067 1.03260 1.23025 0.97223 0.81132 1.01741 1.86113 1.17953 1.30500 1.89252 1.18323 0.83272 0.91501 1.02992 1.20988 0.93196 0.97677 1.06609 1.19570 0.92830 0.95035 0.99820 1.20944 0.97571 0.93860 0.90686 1.62255 1.08263 1.41638 1.13853 1.22193 0.91921 0.97489 0.99072 1.19087 0.88462 0.86340 0.95300 0.97256 1.22205 1.00474 1.02409 0.96677 1.21348 1.19206 1.22235 0.92580 0.92649 1.25646 0.96057 0.95841 1.00974 1.69997 1.25234 1.27985 1.32801 0.85635 0.77795 0.77794 0.80529 1.19745 1.21004 1.19915 1.20920 1.00460 0.91071 0.99858 1.21250 0.90453 1.01015 1.05668 1.18422 0.89572 0.85473 1.03114 1.86114 1.34892 1.14134 1.89292 1.23338 1.00785 0.81316 1.02214 0.88299 0.91844 0.91579 0.91591 0.92039 0.84575 0.94614 0.90891 0.96302 0.92701 0.91912 0.91969 0.95030 0.95464 0.92980 0.84838 0.82248 0.91557 0.86413 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 10.28 71.98 0.74 -1.56 16 2 C 0.04 0.93 5.46 71.98 0.39 1.32 16 3 O -0.32 -9.22 9.92 -79.56 -0.79 -10.01 16 4 C 0.08 2.53 6.70 22.57 0.15 2.68 16 5 C -0.17 -4.92 6.94 22.35 0.16 -4.77 16 6 C -0.07 -2.28 4.89 -19.86 -0.10 -2.38 16 7 C 0.10 3.50 4.55 85.56 0.39 3.89 16 8 N -0.54 -22.95 4.73 -906.04 -4.29 -27.24 16 9 C 0.04 1.63 8.36 127.69 1.07 2.70 16 10 C 0.22 10.84 2.34 44.17 0.10 10.95 16 11 H 0.01 0.53 8.03 -2.39 -0.02 0.51 16 12 C -0.16 -7.60 8.27 71.98 0.60 -7.01 16 13 C -0.52 -28.28 7.88 25.60 0.20 -28.08 16 14 H 0.06 3.05 6.77 -2.91 -0.02 3.03 16 15 C 0.01 0.73 5.30 84.65 0.45 1.18 16 16 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 17 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 C -0.10 -3.01 9.69 22.27 0.22 -2.80 16 22 C -0.17 -4.19 9.04 22.35 0.20 -3.99 16 23 C 0.08 2.26 6.70 22.57 0.15 2.41 16 24 O -0.33 -8.62 10.28 -79.60 -0.82 -9.43 16 25 C 0.02 0.28 9.81 113.37 1.11 1.39 16 26 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 30 H 0.06 1.30 7.67 -2.39 -0.02 1.28 16 31 H 0.14 3.75 6.25 -2.91 -0.02 3.73 16 32 H 0.04 1.27 6.88 -2.39 -0.02 1.25 16 33 H 0.07 2.64 7.94 -2.39 -0.02 2.62 16 34 H 0.02 0.71 6.51 -2.39 -0.02 0.69 16 35 H 0.05 2.35 6.42 -2.39 -0.02 2.33 16 36 H 0.06 2.22 6.15 -2.39 -0.01 2.21 16 37 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 38 H 0.03 1.46 6.48 -2.38 -0.02 1.44 16 39 H 0.03 1.15 6.75 -2.39 -0.02 1.14 16 40 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 42 H 0.16 2.99 6.30 -2.91 -0.02 2.97 16 43 H 0.07 0.86 7.66 -2.38 -0.02 0.84 16 44 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 Total: -1.00 -64.58 353.47 3.18 -61.41 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.97 Total: 16.02 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 5.83 Total: -24.06 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -4.05 Total: -79.62 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -1.61 Total: -19.45 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -64.58 3.18 -61.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.436 kcal (2) G-P(sol) polarization free energy of solvation -64.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds