Wall clock time and date at job start Tue Mar 31 2020 06:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00111 * 2 1 4 4 C 1.52995 * 109.47086 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46871 * 64.99764 * 4 3 2 6 6 C 1.46909 * 110.99969 * 66.04840 * 5 4 3 7 7 C 1.50692 * 109.46766 * 193.95071 * 6 5 4 8 8 H 1.07998 * 120.00610 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99853 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99641 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00021 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47629 * 59.99998 * 11 9 7 13 13 H 1.48505 * 109.47094 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47245 * 299.99612 * 11 9 7 15 15 C 1.46899 * 110.99721 * 189.99692 * 5 4 3 16 16 C 1.50699 * 109.46937 * 170.00109 * 15 5 4 17 17 C 1.38241 * 120.00172 * 90.00181 * 16 15 5 18 18 C 1.38231 * 120.00247 * 179.97438 * 17 16 15 19 19 C 1.38237 * 120.00007 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00082 * 179.97438 * 19 18 17 21 21 O 1.42899 * 109.46785 * 90.00379 * 20 19 18 22 22 C 1.42905 * 113.99778 * 179.97438 * 21 20 19 23 23 C 1.38236 * 119.99744 * 0.25997 * 19 18 17 24 24 C 1.38231 * 120.00269 * 359.48522 * 23 19 18 25 25 H 1.09002 * 109.47179 * 300.00831 * 1 2 3 26 26 H 1.09000 * 109.46727 * 59.99991 * 1 2 3 27 27 H 1.08994 * 109.47253 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47062 * 59.99632 * 3 2 1 29 29 H 1.09000 * 109.47147 * 299.99689 * 3 2 1 30 30 H 1.08996 * 109.47591 * 304.99691 * 4 3 2 31 31 H 1.08996 * 109.46990 * 184.99750 * 4 3 2 32 32 H 1.08997 * 109.46821 * 313.95419 * 6 5 4 33 33 H 1.08999 * 109.47063 * 73.94703 * 6 5 4 34 34 H 0.97005 * 119.99726 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.47362 * 50.00036 * 15 5 4 36 36 H 1.08997 * 109.47511 * 290.00133 * 15 5 4 37 37 H 1.08001 * 119.99488 * 0.02562 * 17 16 15 38 38 H 1.08001 * 120.00020 * 180.02562 * 18 17 16 39 39 H 1.08997 * 109.47198 * 330.00480 * 20 19 18 40 40 H 1.08997 * 109.47040 * 210.00515 * 20 19 18 41 41 H 1.09000 * 109.47187 * 300.00233 * 22 21 20 42 42 H 1.09001 * 109.46558 * 60.00281 * 22 21 20 43 43 H 1.09001 * 109.47103 * 179.97438 * 22 21 20 44 44 H 1.08007 * 119.99735 * 179.72576 * 23 19 18 45 45 H 1.08004 * 120.00486 * 180.25344 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9778 0.5621 -1.2543 6 6 3.6969 1.4346 -2.4024 7 6 3.8392 0.6464 -3.6788 8 1 4.1107 -0.3982 -3.6412 9 6 3.6216 1.2587 -4.8950 10 7 3.2895 2.5304 -4.9409 11 14 3.7973 0.2815 -6.4773 12 1 2.8369 -0.8510 -6.4690 13 1 3.5122 1.1632 -7.6378 14 1 5.1820 -0.2445 -6.5831 15 6 5.4035 0.2132 -1.1949 16 6 5.7630 -0.6359 -2.3869 17 6 6.1954 -0.0384 -3.5560 18 6 6.5256 -0.8173 -4.6492 19 6 6.4229 -2.1937 -4.5736 20 6 6.7823 -3.0428 -5.7655 21 8 8.1692 -3.3824 -5.7076 22 6 8.6155 -4.1915 -6.7977 23 6 5.9848 -2.7909 -3.4064 24 6 5.6596 -2.0124 -2.3114 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9784 2.1765 0.0902 32 1 2.6805 1.8207 -2.3251 33 1 4.4018 2.2659 -2.4081 34 1 3.1369 2.9612 -5.7965 35 1 5.6036 -0.3430 -0.2790 36 1 6.0014 1.1245 -1.2044 37 1 6.2760 1.0370 -3.6150 38 1 6.8639 -0.3504 -5.5625 39 1 6.5824 -2.4867 -6.6814 40 1 6.1844 -3.9541 -5.7560 41 1 8.0556 -5.1266 -6.8092 42 1 8.4535 -3.6594 -7.7351 43 1 9.6779 -4.4051 -6.6805 44 1 5.9003 -3.8662 -3.3487 45 1 5.3213 -2.4792 -1.3981 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:28 Heat of formation + Delta-G solvation = -44.136496 kcal Electronic energy + Delta-G solvation = -24487.602235 eV Core-core repulsion = 21085.220894 eV Total energy + Delta-G solvation = -3402.381341 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.16795 -37.84346 -37.29041 -35.86788 -32.64679 -31.96485 -30.09889 -29.27011 -27.77969 -26.83608 -25.91732 -25.07821 -23.14596 -22.55339 -21.85518 -20.28255 -19.55633 -16.68768 -16.23151 -16.02079 -15.90821 -15.69174 -15.44974 -15.12840 -14.60425 -14.32104 -14.18017 -13.93529 -13.72397 -13.33940 -12.81184 -12.56594 -12.21854 -12.11916 -11.93903 -11.83348 -11.61631 -11.35553 -11.28182 -11.20879 -10.95054 -10.72612 -10.57255 -10.38640 -10.08726 -9.98050 -9.63371 -9.50531 -9.26292 -9.07362 -8.43611 -7.88920 -7.45257 -7.21160 -6.04694 -3.92633 2.08023 2.39942 3.34376 3.38981 3.43913 4.03602 4.28032 4.44206 4.66550 5.12177 5.23423 5.29973 5.34995 5.43296 5.49591 5.50936 5.59976 5.64273 5.67155 5.68487 5.75707 5.78656 5.82127 5.87819 5.93692 5.96916 6.13242 6.15256 6.23203 6.37439 6.43004 6.57607 6.85003 6.96775 7.16224 7.26682 7.27826 7.34116 7.43407 7.60539 7.66515 7.86162 7.91930 8.09877 8.19226 8.55475 9.07808 9.60165 11.05321 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.005304 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.048949 B = 5277.863822 C = 6197.803603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.067 3.933 4 C 0.058 3.942 5 N -0.524 5.524 6 C 0.186 3.814 7 C -0.486 4.486 8 H 0.084 0.916 9 C 0.057 3.943 10 N -0.897 5.897 11 Si 0.873 3.127 12 H -0.278 1.278 13 H -0.294 1.294 14 H -0.253 1.253 15 C 0.106 3.894 16 C -0.055 4.055 17 C -0.025 4.025 18 C -0.127 4.127 19 C -0.098 4.098 20 C 0.106 3.894 21 O -0.385 6.385 22 C 0.030 3.970 23 C -0.129 4.129 24 C -0.108 4.108 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.032 0.968 33 H -0.010 1.010 34 H 0.260 0.740 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.678 -6.767 4.141 8.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.010 4.010 4 C -0.070 4.070 5 N -0.249 5.249 6 C 0.061 3.939 7 C -0.523 4.523 8 H 0.102 0.898 9 C -0.144 4.144 10 N -0.537 5.537 11 Si 0.701 3.299 12 H -0.204 1.204 13 H -0.220 1.220 14 H -0.178 1.178 15 C -0.021 4.021 16 C -0.056 4.056 17 C -0.043 4.043 18 C -0.146 4.146 19 C -0.098 4.098 20 C 0.031 3.969 21 O -0.304 6.304 22 C -0.067 4.067 23 C -0.148 4.148 24 C -0.127 4.127 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.008 0.992 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.138 0.862 38 H 0.127 0.873 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.101 0.899 44 H 0.125 0.875 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.578 -7.139 4.105 8.979 hybrid contribution -0.259 0.573 -1.296 1.440 sum 3.320 -6.566 2.809 7.875 Atomic orbital electron populations 1.22648 0.82516 1.02010 0.99227 1.87991 1.18191 1.27546 1.95151 1.22614 0.93973 0.84923 0.99497 1.22000 0.93399 0.97386 0.94256 1.62161 1.14968 1.45349 1.02382 1.19884 0.96285 0.90453 0.87282 1.21657 1.43123 0.98032 0.89503 0.89839 1.24918 0.95666 0.94732 0.99092 1.69963 1.47598 1.10420 1.25697 0.86964 0.80110 0.80034 0.82775 1.20388 1.22035 1.17768 1.20830 0.89400 0.96670 0.95220 1.19442 0.97368 0.93275 0.95496 1.20730 0.92605 0.99437 0.91562 1.20746 1.02735 0.92696 0.98408 1.19242 1.02513 0.93596 0.94488 1.21354 0.81871 0.97057 0.96654 1.87991 1.25509 1.70724 1.46146 1.22709 1.00108 0.93961 0.89882 1.20606 1.02616 0.98525 0.93044 1.20698 1.00618 0.93288 0.98092 0.95172 0.94251 0.90268 0.94355 0.92340 0.91324 0.94534 0.95048 0.99242 0.93024 0.91894 0.95298 0.86244 0.87269 0.93047 0.93077 0.94382 0.94364 0.89940 0.87542 0.87067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -6.85 10.65 -35.23 -0.38 -7.22 16 3 C 0.07 1.16 6.02 37.16 0.22 1.38 16 4 C 0.06 1.03 5.34 -3.82 -0.02 1.01 16 5 N -0.52 -11.09 4.51 -237.52 -1.07 -12.16 16 6 C 0.19 4.61 4.53 -4.98 -0.02 4.59 16 7 C -0.49 -12.82 5.37 -34.44 -0.18 -13.00 16 8 H 0.08 2.24 4.72 -52.49 -0.25 2.00 16 9 C 0.06 1.56 5.44 -17.82 -0.10 1.46 16 10 N -0.90 -25.74 13.29 55.43 0.74 -25.00 16 11 Si 0.87 21.10 28.31 -169.99 -4.81 16.29 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.25 -5.66 4.87 56.52 0.28 -5.39 16 15 C 0.11 2.04 5.11 -4.98 -0.03 2.02 16 16 C -0.06 -1.12 3.46 -104.62 -0.36 -1.48 16 17 C -0.02 -0.52 5.88 -39.58 -0.23 -0.75 16 18 C -0.13 -2.62 7.16 -39.58 -0.28 -2.90 16 19 C -0.10 -1.89 5.51 -104.62 -0.58 -2.46 16 20 C 0.11 1.77 6.06 36.01 0.22 1.99 16 21 O -0.38 -6.21 10.69 -35.23 -0.38 -6.59 16 22 C 0.03 0.35 11.01 101.05 1.11 1.46 16 23 C -0.13 -2.40 9.70 -39.58 -0.38 -2.78 16 24 C -0.11 -2.06 9.50 -39.58 -0.38 -2.44 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.13 6.12 -51.93 -0.32 0.81 16 30 H 0.07 1.10 7.93 -51.93 -0.41 0.69 16 31 H 0.04 0.62 8.12 -51.93 -0.42 0.19 16 32 H 0.03 0.84 5.91 -51.93 -0.31 0.53 16 33 H -0.01 -0.27 7.99 -51.93 -0.41 -0.68 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.06 1.06 7.88 -51.93 -0.41 0.65 16 36 H 0.03 0.55 7.96 -51.93 -0.41 0.13 16 37 H 0.12 2.67 7.68 -52.49 -0.40 2.27 16 38 H 0.11 2.21 7.12 -52.49 -0.37 1.83 16 39 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 40 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 41 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 45 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -30.26 356.63 -8.05 -38.30 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.63 Total: 1.33 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 0.10 Total: -10.32 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.33 Total: -37.16 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.75 Total: -13.81 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.81 Total: 16.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.26 -8.05 -38.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.834 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds