Wall clock time and date at job start Tue Mar 31 2020 06:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00111 * 2 1 4 4 C 1.52995 * 109.47086 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46871 * 64.99764 * 4 3 2 6 6 C 1.46909 * 110.99969 * 66.04840 * 5 4 3 7 7 C 1.50692 * 109.46766 * 193.95071 * 6 5 4 8 8 H 1.07998 * 120.00610 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99853 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99641 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00021 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47629 * 59.99998 * 11 9 7 13 13 H 1.48505 * 109.47094 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47245 * 299.99612 * 11 9 7 15 15 C 1.46899 * 110.99721 * 189.99692 * 5 4 3 16 16 C 1.50699 * 109.46937 * 170.00109 * 15 5 4 17 17 C 1.38241 * 120.00172 * 90.00181 * 16 15 5 18 18 C 1.38231 * 120.00247 * 179.97438 * 17 16 15 19 19 C 1.38237 * 120.00007 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00082 * 179.97438 * 19 18 17 21 21 O 1.42899 * 109.46785 * 90.00379 * 20 19 18 22 22 C 1.42905 * 113.99778 * 179.97438 * 21 20 19 23 23 C 1.38236 * 119.99744 * 0.25997 * 19 18 17 24 24 C 1.38231 * 120.00269 * 359.48522 * 23 19 18 25 25 H 1.09002 * 109.47179 * 300.00831 * 1 2 3 26 26 H 1.09000 * 109.46727 * 59.99991 * 1 2 3 27 27 H 1.08994 * 109.47253 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47062 * 59.99632 * 3 2 1 29 29 H 1.09000 * 109.47147 * 299.99689 * 3 2 1 30 30 H 1.08996 * 109.47591 * 304.99691 * 4 3 2 31 31 H 1.08996 * 109.46990 * 184.99750 * 4 3 2 32 32 H 1.08997 * 109.46821 * 313.95419 * 6 5 4 33 33 H 1.08999 * 109.47063 * 73.94703 * 6 5 4 34 34 H 0.97005 * 119.99726 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.47362 * 50.00036 * 15 5 4 36 36 H 1.08997 * 109.47511 * 290.00133 * 15 5 4 37 37 H 1.08001 * 119.99488 * 0.02562 * 17 16 15 38 38 H 1.08001 * 120.00020 * 180.02562 * 18 17 16 39 39 H 1.08997 * 109.47198 * 330.00480 * 20 19 18 40 40 H 1.08997 * 109.47040 * 210.00515 * 20 19 18 41 41 H 1.09000 * 109.47187 * 300.00233 * 22 21 20 42 42 H 1.09001 * 109.46558 * 60.00281 * 22 21 20 43 43 H 1.09001 * 109.47103 * 179.97438 * 22 21 20 44 44 H 1.08007 * 119.99735 * 179.72576 * 23 19 18 45 45 H 1.08004 * 120.00486 * 180.25344 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9778 0.5621 -1.2543 6 6 3.6969 1.4346 -2.4024 7 6 3.8392 0.6464 -3.6788 8 1 4.1107 -0.3982 -3.6412 9 6 3.6216 1.2587 -4.8950 10 7 3.2895 2.5304 -4.9409 11 14 3.7973 0.2815 -6.4773 12 1 2.8369 -0.8510 -6.4690 13 1 3.5122 1.1632 -7.6378 14 1 5.1820 -0.2445 -6.5831 15 6 5.4035 0.2132 -1.1949 16 6 5.7630 -0.6359 -2.3869 17 6 6.1954 -0.0384 -3.5560 18 6 6.5256 -0.8173 -4.6492 19 6 6.4229 -2.1937 -4.5736 20 6 6.7823 -3.0428 -5.7655 21 8 8.1692 -3.3824 -5.7076 22 6 8.6155 -4.1915 -6.7977 23 6 5.9848 -2.7909 -3.4064 24 6 5.6596 -2.0124 -2.3114 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9784 2.1765 0.0902 32 1 2.6805 1.8207 -2.3251 33 1 4.4018 2.2659 -2.4081 34 1 3.1369 2.9612 -5.7965 35 1 5.6036 -0.3430 -0.2790 36 1 6.0014 1.1245 -1.2044 37 1 6.2760 1.0370 -3.6150 38 1 6.8639 -0.3504 -5.5625 39 1 6.5824 -2.4867 -6.6814 40 1 6.1844 -3.9541 -5.7560 41 1 8.0556 -5.1266 -6.8092 42 1 8.4535 -3.6594 -7.7351 43 1 9.6779 -4.4051 -6.6805 44 1 5.9003 -3.8662 -3.3487 45 1 5.3213 -2.4792 -1.3981 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:28 Heat of formation + Delta-G solvation = -64.188373 kcal Electronic energy + Delta-G solvation = -24488.471750 eV Core-core repulsion = 21085.220894 eV Total energy + Delta-G solvation = -3403.250856 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.69582 -39.20752 -38.54182 -37.37225 -34.66051 -33.40757 -31.67235 -30.68794 -29.52744 -28.15352 -27.07173 -26.38814 -24.91327 -24.07120 -23.39776 -21.80300 -21.16254 -18.64386 -17.50493 -17.37641 -17.20423 -16.99800 -16.86777 -16.67998 -16.23502 -15.80791 -15.61808 -15.42087 -15.03866 -14.91649 -14.43350 -14.12730 -13.85435 -13.64364 -13.35647 -13.17984 -13.15203 -12.88542 -12.69033 -12.58001 -12.45945 -12.33028 -12.28515 -11.90758 -11.65866 -11.51780 -11.34671 -11.17338 -10.64514 -10.53979 -10.38810 -9.44674 -9.09024 -8.90342 -8.13165 -6.05615 0.56743 0.84550 1.41019 1.41794 1.47952 2.44545 2.76977 3.01728 3.20204 3.30014 3.58699 4.00721 4.02740 4.16873 4.21204 4.31177 4.35101 4.36887 4.44759 4.50288 4.56003 4.56732 4.57891 4.59760 4.71904 4.72821 4.74786 4.84336 4.87825 4.89228 4.97413 5.04163 5.23823 5.28629 5.35532 5.43390 5.74030 5.79637 5.88722 6.03138 6.17076 6.22187 6.37113 6.38561 6.43336 6.72794 6.99730 7.51284 8.97361 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.005304 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.048949 B = 5277.863822 C = 6197.803603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.069 3.931 4 C 0.055 3.945 5 N -0.533 5.533 6 C 0.204 3.796 7 C -0.479 4.479 8 H 0.082 0.918 9 C 0.012 3.988 10 N -0.936 5.936 11 Si 0.917 3.083 12 H -0.282 1.282 13 H -0.299 1.299 14 H -0.229 1.229 15 C 0.106 3.894 16 C -0.068 4.068 17 C -0.042 4.042 18 C -0.137 4.137 19 C -0.107 4.107 20 C 0.108 3.892 21 O -0.407 6.407 22 C 0.023 3.977 23 C -0.125 4.125 24 C -0.110 4.110 25 H 0.057 0.943 26 H 0.027 0.973 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.094 0.906 31 H 0.044 0.956 32 H 0.007 0.993 33 H -0.038 1.038 34 H 0.257 0.743 35 H 0.093 0.907 36 H 0.024 0.976 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.100 0.900 44 H 0.136 0.864 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.119 -9.449 4.989 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.316 6.316 3 C -0.007 4.007 4 C -0.073 4.073 5 N -0.257 5.257 6 C 0.077 3.923 7 C -0.517 4.517 8 H 0.099 0.901 9 C -0.186 4.186 10 N -0.578 5.578 11 Si 0.744 3.256 12 H -0.208 1.208 13 H -0.226 1.226 14 H -0.153 1.153 15 C -0.021 4.021 16 C -0.069 4.069 17 C -0.060 4.060 18 C -0.156 4.156 19 C -0.108 4.108 20 C 0.032 3.968 21 O -0.327 6.327 22 C -0.073 4.073 23 C -0.144 4.144 24 C -0.128 4.128 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.025 0.975 33 H -0.020 1.020 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.042 0.958 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.118 0.882 44 H 0.154 0.846 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.039 -9.846 4.966 11.744 hybrid contribution -0.333 1.309 -1.485 2.007 sum 3.706 -8.536 3.481 9.936 Atomic orbital electron populations 1.22832 0.80684 1.03340 0.99953 1.87929 1.20323 1.28027 1.95321 1.22590 0.93716 0.84790 0.99647 1.22152 0.93828 0.98116 0.93222 1.62091 1.16357 1.44625 1.02650 1.19515 0.94016 0.89983 0.88746 1.21795 1.41974 0.97785 0.90119 0.90051 1.25535 0.95899 0.95355 1.01765 1.70076 1.49857 1.11908 1.25934 0.86259 0.81107 0.78614 0.79627 1.20808 1.22587 1.15305 1.20915 0.88139 0.96792 0.96247 1.19626 0.97595 0.94249 0.95433 1.20621 0.94281 0.98353 0.92782 1.20828 1.03048 0.93690 0.98026 1.19607 1.01914 0.93297 0.95950 1.21309 0.82774 0.97484 0.95189 1.87942 1.24991 1.71731 1.48057 1.22967 1.01347 0.94099 0.88906 1.20997 1.00932 1.00074 0.92355 1.20994 0.99893 0.92715 0.99232 0.92470 0.95450 0.88710 0.90864 0.95427 0.88793 0.93812 0.97517 1.02013 0.93406 0.88830 0.95753 0.88787 0.87696 0.93218 0.90958 0.92705 0.93661 0.88193 0.84598 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -14.14 10.65 -148.98 -1.59 -15.72 16 3 C 0.07 2.34 6.02 71.98 0.43 2.78 16 4 C 0.05 1.87 5.34 86.30 0.46 2.33 16 5 N -0.53 -22.40 4.51 -905.38 -4.08 -26.48 16 6 C 0.20 10.44 4.53 85.55 0.39 10.83 16 7 C -0.48 -25.86 5.37 25.60 0.14 -25.73 16 8 H 0.08 4.39 4.72 -2.91 -0.01 4.38 16 9 C 0.01 0.66 5.44 84.66 0.46 1.12 16 10 N -0.94 -55.85 13.29 21.45 0.28 -55.56 16 11 Si 0.92 43.86 28.31 68.60 1.94 45.80 16 12 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 13 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 14 H -0.23 -9.97 4.87 99.48 0.48 -9.48 16 15 C 0.11 3.98 5.11 85.56 0.44 4.42 16 16 C -0.07 -2.72 3.46 -19.86 -0.07 -2.79 16 17 C -0.04 -1.78 5.88 22.27 0.13 -1.65 16 18 C -0.14 -5.60 7.16 22.27 0.16 -5.44 16 19 C -0.11 -3.92 5.51 -19.87 -0.11 -4.03 16 20 C 0.11 3.31 6.06 71.24 0.43 3.75 16 21 O -0.41 -12.12 10.69 -148.98 -1.59 -13.71 16 22 C 0.02 0.46 11.01 113.37 1.25 1.70 16 23 C -0.13 -4.28 9.70 22.27 0.22 -4.07 16 24 C -0.11 -3.92 9.50 22.27 0.21 -3.71 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.03 1.10 6.12 -2.39 -0.01 1.08 16 30 H 0.09 2.75 7.93 -2.39 -0.02 2.73 16 31 H 0.04 1.44 8.12 -2.39 -0.02 1.42 16 32 H 0.01 0.38 5.91 -2.39 -0.01 0.37 16 33 H -0.04 -2.10 7.99 -2.39 -0.02 -2.12 16 34 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 35 H 0.09 2.91 7.88 -2.39 -0.02 2.89 16 36 H 0.02 0.93 7.96 -2.39 -0.02 0.91 16 37 H 0.09 4.44 7.68 -2.91 -0.02 4.42 16 38 H 0.10 4.24 7.12 -2.91 -0.02 4.22 16 39 H 0.05 1.52 8.09 -2.39 -0.02 1.50 16 40 H 0.07 1.89 8.08 -2.39 -0.02 1.87 16 41 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 45 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -66.65 356.63 1.48 -65.18 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.73 Total: 18.96 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 5.79 Total: -18.46 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -3.80 Total: -82.04 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -3.18 Total: -29.43 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.94 Total: 45.80 kcal Total: -66.65 1.48 -65.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.990 kcal (2) G-P(sol) polarization free energy of solvation -66.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds