Wall clock time and date at job start Tue Mar 31 2020 06:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46948 * 2 1 4 4 C 1.35993 * 116.99709 * 180.02562 * 3 2 1 5 5 C 1.38567 * 120.07575 * 359.97438 * 4 3 2 6 6 C 1.38236 * 120.00126 * 180.02562 * 5 4 3 7 7 C 1.38254 * 120.14828 * 0.03049 * 6 5 4 8 8 C 1.50695 * 119.92924 * 179.97438 * 7 6 5 9 9 N 1.46907 * 109.47223 * 90.00015 * 8 7 6 10 10 C 1.46898 * 111.00167 * 66.04489 * 9 8 7 11 11 C 1.46899 * 111.00061 * 190.00161 * 9 8 7 12 12 H 1.09000 * 109.46826 * 299.99650 * 11 9 8 13 13 C 1.52999 * 109.46919 * 59.99802 * 11 9 8 14 14 C 1.50699 * 109.47083 * 179.97438 * 11 9 8 15 15 H 1.07997 * 119.99799 * 332.57379 * 14 11 9 16 16 C 1.37869 * 120.00103 * 152.57572 * 14 11 9 17 17 N 1.31513 * 120.00359 * 174.17613 * 16 14 11 18 18 Si 1.86806 * 119.99891 * 354.17648 * 16 14 11 19 19 H 1.48505 * 109.47069 * 274.23013 * 18 16 14 20 20 H 1.48499 * 109.47046 * 34.23250 * 18 16 14 21 21 H 1.48500 * 109.47170 * 154.23311 * 18 16 14 22 22 C 1.38247 * 120.14270 * 0.22956 * 7 6 5 23 23 C 1.38563 * 119.99919 * 359.48958 * 22 7 6 24 24 O 1.36002 * 120.07246 * 180.25888 * 23 22 7 25 25 C 1.42897 * 116.99845 * 0.27550 * 24 23 22 26 26 H 1.08997 * 109.47360 * 300.00326 * 1 2 3 27 27 H 1.09004 * 109.46632 * 60.00220 * 1 2 3 28 28 H 1.08997 * 109.46935 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47360 * 239.99674 * 2 1 3 30 30 H 1.08999 * 109.46792 * 119.99318 * 2 1 3 31 31 H 1.07998 * 119.99717 * 0.02562 * 5 4 3 32 32 H 1.08002 * 119.92982 * 180.02562 * 6 5 4 33 33 H 1.08992 * 109.47218 * 329.99927 * 8 7 6 34 34 H 1.09006 * 109.47228 * 209.99827 * 8 7 6 35 35 H 1.09000 * 109.47033 * 183.95846 * 10 9 8 36 36 H 1.09004 * 109.47002 * 303.95920 * 10 9 8 37 37 H 1.08995 * 109.47111 * 63.95138 * 10 9 8 38 38 H 1.09005 * 109.46890 * 172.85219 * 13 11 9 39 39 H 1.08999 * 109.47291 * 292.84641 * 13 11 9 40 40 H 1.08992 * 109.47477 * 52.85345 * 13 11 9 41 41 H 0.96998 * 120.00218 * 179.97438 * 17 16 14 42 42 H 1.07999 * 119.99680 * 179.75368 * 22 7 6 43 43 H 1.09001 * 109.47262 * 60.00076 * 25 24 23 44 44 H 1.09005 * 109.47159 * 180.02562 * 25 24 23 45 45 H 1.09008 * 109.47168 * 300.00200 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.2001 0.4277 -0.0005 6 6 5.5703 0.6105 -0.0005 7 6 6.1004 1.8874 0.0001 8 6 7.5949 2.0811 0.0006 9 7 8.0810 2.1445 -1.3842 10 6 7.5736 3.3427 -2.0660 11 6 9.5484 2.0944 -1.4299 12 1 9.9581 2.9395 -0.8767 13 6 10.0340 0.7880 -0.7988 14 6 10.0089 2.1609 -2.8632 15 1 9.3686 1.7979 -3.6535 16 6 11.2477 2.6852 -3.1657 17 7 11.6976 2.6392 -4.4006 18 14 12.2871 3.4610 -1.8213 19 1 11.9005 4.8853 -1.6565 20 1 12.0652 2.7367 -0.5441 21 1 13.7220 3.3777 -2.1948 22 6 5.2624 2.9870 0.0055 23 6 3.8881 2.8107 -0.0004 24 8 3.0624 3.8913 -0.0004 25 6 3.6802 5.1798 -0.0003 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.7885 -0.5708 -0.0005 32 1 6.2282 -0.2459 -0.0009 33 1 8.0693 1.2450 0.5143 34 1 7.8407 3.0102 0.5148 35 1 7.8905 3.3290 -3.1088 36 1 6.4847 3.3547 -2.0172 37 1 7.9689 4.2333 -1.5777 38 1 11.1098 0.6915 -0.9455 39 1 9.8121 0.7955 0.2684 40 1 9.5263 -0.0537 -1.2696 41 1 12.5689 3.0084 -4.6135 42 1 5.6791 3.9833 0.0100 43 1 4.3007 5.2853 -0.8902 44 1 2.9106 5.9518 0.0001 45 1 4.3007 5.2852 0.8898 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097078763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:44 Heat of formation + Delta-G solvation = -63.166081 kcal Electronic energy + Delta-G solvation = -23942.474899 eV Core-core repulsion = 20539.268373 eV Total energy + Delta-G solvation = -3403.206526 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.57500 -39.54168 -39.22449 -37.52964 -34.71834 -33.02202 -32.17482 -31.10600 -30.81247 -28.79619 -27.68053 -26.41453 -24.98870 -24.63164 -22.65426 -22.12360 -21.01758 -19.44464 -19.04480 -18.05032 -17.51207 -17.20043 -16.85934 -16.39556 -16.06804 -15.77338 -15.64282 -15.43093 -15.14997 -14.58115 -14.42005 -14.17586 -14.11701 -13.94021 -13.32494 -13.18168 -12.98297 -12.91611 -12.87393 -12.78017 -12.55940 -12.39851 -12.22935 -12.19652 -11.89286 -11.87447 -11.78813 -11.65628 -11.53547 -11.02629 -10.73172 -9.65559 -8.98190 -8.70509 -8.27039 -6.29346 0.31264 0.46798 1.32499 1.34773 1.45116 2.28448 2.34020 2.37168 2.68027 3.07404 3.46127 3.80736 3.86054 4.07887 4.10157 4.12005 4.28837 4.34526 4.37537 4.39868 4.43558 4.47177 4.55270 4.57271 4.69336 4.70964 4.73270 4.83887 4.86511 4.92134 4.96305 4.97528 5.14442 5.16830 5.23940 5.25911 5.33817 5.49866 5.68480 5.72990 5.74970 6.08625 6.14528 6.38246 6.64791 6.71623 6.79386 7.36257 8.89920 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.024412 B = 0.003539 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.724489 B = 7910.284220 C = 8411.465348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.328 6.328 4 C 0.082 3.918 5 C -0.169 4.169 6 C -0.100 4.100 7 C -0.074 4.074 8 C 0.089 3.911 9 N -0.535 5.535 10 C 0.045 3.955 11 C 0.182 3.818 12 H -0.003 1.003 13 C -0.130 4.130 14 C -0.499 4.499 15 H 0.034 0.966 16 C 0.014 3.986 17 N -0.948 5.948 18 Si 0.933 3.067 19 H -0.273 1.273 20 H -0.240 1.240 21 H -0.287 1.287 22 C -0.166 4.166 23 C 0.079 3.921 24 O -0.328 6.328 25 C 0.019 3.981 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.139 0.861 33 H 0.094 0.906 34 H 0.036 0.964 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.014 0.986 38 H 0.039 0.961 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.265 0.735 42 H 0.139 0.861 43 H 0.055 0.945 44 H 0.120 0.880 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.993 -1.954 14.208 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.243 6.243 4 C 0.037 3.963 5 C -0.187 4.187 6 C -0.119 4.119 7 C -0.075 4.075 8 C -0.038 4.038 9 N -0.259 5.259 10 C -0.103 4.103 11 C 0.075 3.925 12 H 0.014 0.986 13 C -0.188 4.188 14 C -0.537 4.537 15 H 0.052 0.948 16 C -0.183 4.183 17 N -0.589 5.589 18 Si 0.758 3.242 19 H -0.199 1.199 20 H -0.164 1.164 21 H -0.213 1.213 22 C -0.185 4.185 23 C 0.034 3.966 24 O -0.242 6.242 25 C -0.075 4.075 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.175 0.825 32 H 0.156 0.844 33 H 0.112 0.888 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.032 0.968 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.156 0.844 43 H 0.073 0.927 44 H 0.139 0.861 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.382 -2.174 13.852 23.922 hybrid contribution 1.471 1.214 0.144 1.913 sum -17.911 -0.960 13.996 22.751 Atomic orbital electron populations 1.21786 0.91547 1.04105 1.02984 1.23077 0.96919 0.80956 1.02233 1.86124 1.17981 1.30975 1.89208 1.18409 0.83521 0.91482 1.02925 1.21259 0.93469 0.98084 1.05895 1.20940 0.94503 0.96996 0.99468 1.19567 0.94825 0.93107 1.00008 1.21133 0.91091 1.01419 0.90144 1.62001 1.10347 1.39444 1.14152 1.22119 0.99001 0.90027 0.99155 1.19611 0.84475 0.93919 0.94510 0.98555 1.21927 0.99820 0.98438 0.98654 1.21054 1.01062 1.39388 0.92216 0.94771 1.25780 0.98809 0.96344 0.97374 1.70048 1.20133 1.47787 1.20883 0.85960 0.77729 0.79493 0.81061 1.19877 1.16355 1.21315 1.21045 0.90788 1.00285 1.06417 1.18394 0.89084 0.85865 1.03234 1.86106 1.34750 1.14024 1.89360 1.23290 1.00685 0.81714 1.01808 0.91911 0.92251 0.87996 0.91432 0.90847 0.82481 0.84360 0.88829 0.94566 0.93373 0.91392 0.96783 0.94146 0.92457 0.92911 0.92601 0.84361 0.92650 0.86134 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 71.98 0.74 -1.18 16 2 C 0.04 0.73 5.46 71.98 0.39 1.12 16 3 O -0.33 -8.62 9.92 -79.61 -0.79 -9.41 16 4 C 0.08 2.29 6.70 22.57 0.15 2.44 16 5 C -0.17 -4.11 9.04 22.35 0.20 -3.91 16 6 C -0.10 -2.68 9.69 22.27 0.22 -2.47 16 7 C -0.07 -2.18 4.88 -19.86 -0.10 -2.28 16 8 C 0.09 2.86 4.93 85.55 0.42 3.29 16 9 N -0.54 -21.65 4.61 -906.05 -4.18 -25.83 16 10 C 0.05 1.81 8.92 127.69 1.14 2.95 16 11 C 0.18 8.31 1.61 44.17 0.07 8.38 16 12 H 0.00 -0.14 5.71 -2.39 -0.01 -0.15 16 13 C -0.13 -5.24 8.43 71.98 0.61 -4.63 16 14 C -0.50 -28.04 7.57 25.60 0.19 -27.84 16 15 H 0.03 2.19 7.82 -2.91 -0.02 2.17 16 16 C 0.01 0.81 5.47 84.65 0.46 1.28 16 17 N -0.95 -58.87 13.96 21.44 0.30 -58.57 16 18 Si 0.93 43.39 26.37 68.60 1.81 45.20 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.24 -10.18 6.39 99.48 0.64 -9.54 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 C -0.17 -4.69 6.90 22.35 0.15 -4.53 16 23 C 0.08 2.31 6.70 22.57 0.15 2.46 16 24 O -0.33 -9.14 10.28 -79.71 -0.82 -9.96 16 25 C 0.02 0.38 9.81 113.37 1.11 1.49 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 1.05 7.66 -2.39 -0.02 1.04 16 30 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 31 H 0.16 2.85 6.30 -2.91 -0.02 2.83 16 32 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.09 2.78 5.92 -2.39 -0.01 2.76 16 34 H 0.04 1.12 8.06 -2.38 -0.02 1.10 16 35 H 0.05 2.23 6.83 -2.39 -0.02 2.21 16 36 H 0.07 2.40 5.90 -2.38 -0.01 2.39 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.04 1.68 7.24 -2.38 -0.02 1.66 16 39 H 0.06 1.88 6.59 -2.39 -0.02 1.87 16 40 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.14 3.56 6.24 -2.91 -0.02 3.54 16 43 H 0.05 1.07 7.68 -2.39 -0.02 1.05 16 44 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.06 1.07 7.65 -2.38 -0.02 1.05 16 Total: -1.00 -69.64 354.63 3.13 -66.51 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.90 Total: 15.49 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 5.92 Total: -23.43 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -3.88 Total: -84.40 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -1.61 Total: -19.36 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.81 Total: 45.20 kcal Total: -69.64 3.13 -66.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097078763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.339 kcal (2) G-P(sol) polarization free energy of solvation -69.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds