Wall clock time and date at job start Tue Mar 31 2020 06:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35894 * 116.99797 * 2 1 4 4 C 1.38757 * 120.05791 * 0.24971 * 3 2 1 5 5 C 1.38127 * 119.94205 * 180.32367 * 4 3 2 6 6 C 1.38289 * 120.05600 * 359.68152 * 5 4 3 7 7 C 1.38249 * 120.11197 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05203 * 0.02770 * 7 6 5 9 9 C 1.50708 * 120.02484 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47030 * 267.02145 * 9 8 7 11 11 C 1.46895 * 111.00112 * 288.02277 * 10 9 8 12 12 C 1.52996 * 109.47479 * 292.30239 * 11 10 9 13 13 O 1.42900 * 109.47224 * 68.84081 * 12 11 10 14 14 C 1.46899 * 110.99794 * 164.07092 * 10 9 8 15 15 C 1.53000 * 109.47339 * 193.78227 * 14 10 9 16 16 C 1.53002 * 109.47268 * 184.77077 * 15 14 10 17 17 C 1.50699 * 109.46950 * 180.02562 * 16 15 14 18 18 H 1.08008 * 119.99986 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00000 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99788 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00111 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47355 * 59.99722 * 21 19 17 23 23 H 1.48503 * 109.46980 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47160 * 299.99639 * 21 19 17 25 25 H 1.08999 * 109.46973 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46814 * 300.00401 * 1 2 3 27 27 H 1.08998 * 109.47089 * 59.99894 * 1 2 3 28 28 H 1.08001 * 120.03228 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.97257 * 179.70665 * 5 4 3 30 30 H 1.08001 * 119.94448 * 180.02562 * 6 5 4 31 31 H 1.07998 * 119.97174 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.46927 * 27.01799 * 9 8 7 33 33 H 1.08999 * 109.46795 * 147.01760 * 9 8 7 34 34 H 1.09008 * 109.46744 * 52.30082 * 11 10 9 35 35 H 1.09000 * 109.47354 * 172.29777 * 11 10 9 36 36 H 1.08998 * 109.47543 * 188.84611 * 12 11 10 37 37 H 1.09004 * 109.46685 * 308.84947 * 12 11 10 38 38 H 0.96708 * 113.99967 * 184.99728 * 13 12 11 39 39 H 1.09004 * 109.47497 * 313.78601 * 14 10 9 40 40 H 1.09004 * 109.47271 * 73.78078 * 14 10 9 41 41 H 1.08998 * 109.47072 * 304.77886 * 15 14 10 42 42 H 1.09000 * 109.46513 * 64.77231 * 15 14 10 43 43 H 1.08998 * 109.47076 * 300.00037 * 16 15 14 44 44 H 1.08997 * 109.46857 * 60.00243 * 16 15 14 45 45 H 0.97009 * 119.99798 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9209 3.6048 -0.0015 6 6 3.3020 3.6758 -0.0069 7 6 4.0560 2.5171 -0.0060 8 6 3.4311 1.2848 -0.0003 9 6 4.2537 0.0221 0.0001 10 7 4.4556 -0.4312 -1.3826 11 6 3.2120 -0.9736 -1.9457 12 6 2.8493 -2.2729 -1.2239 13 8 2.4664 -1.9797 0.1212 14 6 5.5423 -1.4167 -1.4601 15 6 5.9544 -1.6076 -2.9211 16 6 7.0021 -2.7187 -3.0145 17 6 7.4085 -2.9062 -4.4535 18 1 6.9642 -2.2938 -5.2244 19 6 8.3473 -3.8596 -4.7861 20 7 8.8886 -4.6049 -3.8474 21 14 8.8516 -4.0916 -6.5697 22 1 9.4263 -2.8251 -7.0905 23 1 9.8684 -5.1701 -6.6604 24 1 7.6615 -4.4636 -7.3763 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2128 2.3204 0.0097 29 1 1.3341 4.5114 -0.0023 30 1 3.7923 4.6381 -0.0117 31 1 5.1344 2.5751 -0.0097 32 1 5.2209 0.2187 0.4628 33 1 3.7318 -0.7513 0.5635 34 1 2.4080 -0.2491 -1.8155 35 1 3.3514 -1.1747 -3.0079 36 1 2.0202 -2.7564 -1.7406 37 1 3.7123 -2.9388 -1.2190 38 1 2.2962 -2.7636 0.6615 39 1 6.3971 -1.0610 -0.8849 40 1 5.2001 -2.3677 -1.0519 41 1 5.0806 -1.8813 -3.5124 42 1 6.3755 -0.6780 -3.3042 43 1 7.8759 -2.4448 -2.4233 44 1 6.5810 -3.6482 -2.6315 45 1 9.5495 -5.2754 -4.0814 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103143729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:57 Heat of formation + Delta-G solvation = -53.261314 kcal Electronic energy + Delta-G solvation = -24349.836117 eV Core-core repulsion = 20947.059094 eV Total energy + Delta-G solvation = -3402.777023 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32545 -38.24627 -37.24592 -35.55098 -33.68645 -32.12405 -30.84016 -29.99018 -28.72869 -27.28628 -26.60601 -24.49943 -23.34897 -22.01486 -21.66456 -20.33793 -19.27984 -17.85169 -17.39222 -16.44231 -16.24270 -16.00392 -15.64223 -15.51466 -14.76416 -14.44870 -14.29680 -13.90888 -13.66871 -13.46913 -13.06334 -12.82967 -12.42772 -12.30070 -12.03750 -11.84816 -11.74024 -11.56820 -11.27725 -11.19622 -11.14511 -10.80706 -10.68320 -10.62010 -10.50339 -10.40108 -9.64421 -9.39870 -9.26469 -9.02872 -8.78936 -8.29859 -8.05703 -7.65187 -5.95612 -3.97331 1.38674 1.52789 3.36285 3.36699 3.40200 3.43251 3.78349 4.41111 4.50005 4.63844 4.80300 4.87962 5.05935 5.09610 5.10279 5.34380 5.38288 5.40012 5.44995 5.45739 5.50167 5.57893 5.72275 5.80091 5.84718 5.92844 6.03577 6.15472 6.34708 6.39499 6.42673 6.45214 6.55686 6.72273 6.80444 6.88658 6.90524 7.21883 7.51183 7.54744 7.62910 7.74229 7.80963 7.89878 8.05603 8.49550 9.09900 9.66369 11.15800 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023374 B = 0.003360 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.607432 B = 8332.015274 C = 8909.233312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.267 6.267 3 C 0.132 3.868 4 C -0.219 4.219 5 C -0.089 4.089 6 C -0.164 4.164 7 C -0.068 4.068 8 C -0.095 4.095 9 C 0.076 3.924 10 N -0.528 5.528 11 C 0.055 3.945 12 C 0.037 3.963 13 O -0.538 6.538 14 C 0.050 3.950 15 C -0.103 4.103 16 C 0.023 3.977 17 C -0.517 4.517 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.094 0.906 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.053 0.947 38 H 0.357 0.643 39 H 0.065 0.935 40 H 0.035 0.965 41 H 0.045 0.955 42 H 0.053 0.947 43 H 0.015 0.985 44 H 0.012 0.988 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.900 11.422 11.158 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.179 6.179 3 C 0.085 3.915 4 C -0.238 4.238 5 C -0.108 4.108 6 C -0.182 4.182 7 C -0.087 4.087 8 C -0.096 4.096 9 C -0.050 4.050 10 N -0.250 5.250 11 C -0.074 4.074 12 C -0.042 4.042 13 O -0.342 6.342 14 C -0.077 4.077 15 C -0.141 4.141 16 C -0.015 4.015 17 C -0.556 4.556 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.112 0.888 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.202 0.798 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.033 0.967 44 H 0.030 0.970 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.461 12.097 10.684 23.778 hybrid contribution -0.235 -1.261 -0.454 1.361 sum -17.697 10.837 10.229 23.135 Atomic orbital electron populations 1.22946 0.80427 1.03247 1.00306 1.86596 1.19261 1.24534 1.87527 1.18993 0.92099 0.84775 0.95589 1.21182 0.99606 0.92646 1.10321 1.20841 0.94677 0.96729 0.98509 1.20992 0.93878 0.98277 1.05064 1.20945 0.99939 0.91114 0.96705 1.19246 0.90397 0.95854 1.04113 1.21377 0.98264 0.94578 0.90805 1.62269 1.05615 1.38612 1.18551 1.22357 0.92565 0.94226 0.98206 1.22950 0.98198 0.99386 0.83649 1.86757 1.90686 1.34376 1.22375 1.22394 0.92638 0.92940 0.99724 1.21620 0.99458 1.00456 0.92549 1.19064 0.93131 0.92521 0.96771 1.21235 1.22597 1.18447 0.93300 0.92764 1.25023 0.96340 0.95956 0.97182 1.69961 1.28794 1.22603 1.32349 0.86672 0.78254 0.77725 0.85428 1.20226 1.21354 1.20299 0.88781 0.93551 0.93538 0.86098 0.86505 0.86372 0.85601 0.91544 0.88887 0.89823 0.89821 0.94411 0.92879 0.79771 0.91646 0.94700 0.93613 0.92817 0.96707 0.96989 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.27 -3.17 4.26 -43.92 -0.19 -3.35 16 3 C 0.13 1.69 5.63 -39.22 -0.22 1.47 16 4 C -0.22 -2.46 9.04 -39.43 -0.36 -2.82 16 5 C -0.09 -0.95 10.04 -39.60 -0.40 -1.35 16 6 C -0.16 -1.85 10.04 -39.56 -0.40 -2.24 16 7 C -0.07 -0.87 9.69 -39.60 -0.38 -1.26 16 8 C -0.09 -1.31 5.14 -104.47 -0.54 -1.85 16 9 C 0.08 1.11 4.84 -4.97 -0.02 1.09 16 10 N -0.53 -8.51 4.63 -236.07 -1.09 -9.60 16 11 C 0.05 0.82 5.28 -3.83 -0.02 0.80 16 12 C 0.04 0.49 6.80 37.16 0.25 0.74 16 13 O -0.54 -6.25 7.16 -59.75 -0.43 -6.67 16 14 C 0.05 0.90 4.74 -3.82 -0.02 0.88 16 15 C -0.10 -2.20 5.25 -26.73 -0.14 -2.34 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 18 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 21 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 27 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 28 H 0.12 1.10 6.30 -52.49 -0.33 0.77 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 32 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 33 H 0.09 1.38 4.45 -51.91 -0.23 1.14 16 34 H 0.08 1.25 4.83 -51.92 -0.25 1.00 16 35 H 0.08 1.32 6.68 -51.93 -0.35 0.97 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.78 5.69 -51.93 -0.30 0.49 16 38 H 0.36 2.91 9.12 45.58 0.42 3.33 16 39 H 0.07 1.18 7.77 -51.93 -0.40 0.78 16 40 H 0.03 0.63 5.55 -51.93 -0.29 0.34 16 41 H 0.05 0.96 6.57 -51.93 -0.34 0.62 16 42 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -32.06 346.92 -8.76 -40.82 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.19 Total: 2.13 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -1.80 Total: -18.93 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.36 Total: -36.19 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.61 Total: -10.03 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.06 -8.76 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103143729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.443 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds