Wall clock time and date at job start Tue Mar 31 2020 06:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35894 * 116.99797 * 2 1 4 4 C 1.38757 * 120.05791 * 0.24971 * 3 2 1 5 5 C 1.38127 * 119.94205 * 180.32367 * 4 3 2 6 6 C 1.38289 * 120.05600 * 359.68152 * 5 4 3 7 7 C 1.38249 * 120.11197 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05203 * 0.02770 * 7 6 5 9 9 C 1.50708 * 120.02484 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47030 * 267.02145 * 9 8 7 11 11 C 1.46895 * 111.00112 * 288.02277 * 10 9 8 12 12 C 1.52996 * 109.47479 * 292.30239 * 11 10 9 13 13 O 1.42900 * 109.47224 * 68.84081 * 12 11 10 14 14 C 1.46899 * 110.99794 * 164.07092 * 10 9 8 15 15 C 1.53000 * 109.47339 * 193.78227 * 14 10 9 16 16 C 1.53002 * 109.47268 * 184.77077 * 15 14 10 17 17 C 1.50699 * 109.46950 * 180.02562 * 16 15 14 18 18 H 1.08008 * 119.99986 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00000 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99788 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00111 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47355 * 59.99722 * 21 19 17 23 23 H 1.48503 * 109.46980 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47160 * 299.99639 * 21 19 17 25 25 H 1.08999 * 109.46973 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46814 * 300.00401 * 1 2 3 27 27 H 1.08998 * 109.47089 * 59.99894 * 1 2 3 28 28 H 1.08001 * 120.03228 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.97257 * 179.70665 * 5 4 3 30 30 H 1.08001 * 119.94448 * 180.02562 * 6 5 4 31 31 H 1.07998 * 119.97174 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.46927 * 27.01799 * 9 8 7 33 33 H 1.08999 * 109.46795 * 147.01760 * 9 8 7 34 34 H 1.09008 * 109.46744 * 52.30082 * 11 10 9 35 35 H 1.09000 * 109.47354 * 172.29777 * 11 10 9 36 36 H 1.08998 * 109.47543 * 188.84611 * 12 11 10 37 37 H 1.09004 * 109.46685 * 308.84947 * 12 11 10 38 38 H 0.96708 * 113.99967 * 184.99728 * 13 12 11 39 39 H 1.09004 * 109.47497 * 313.78601 * 14 10 9 40 40 H 1.09004 * 109.47271 * 73.78078 * 14 10 9 41 41 H 1.08998 * 109.47072 * 304.77886 * 15 14 10 42 42 H 1.09000 * 109.46513 * 64.77231 * 15 14 10 43 43 H 1.08998 * 109.47076 * 300.00037 * 16 15 14 44 44 H 1.08997 * 109.46857 * 60.00243 * 16 15 14 45 45 H 0.97009 * 119.99798 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9209 3.6048 -0.0015 6 6 3.3020 3.6758 -0.0069 7 6 4.0560 2.5171 -0.0060 8 6 3.4311 1.2848 -0.0003 9 6 4.2537 0.0221 0.0001 10 7 4.4556 -0.4312 -1.3826 11 6 3.2120 -0.9736 -1.9457 12 6 2.8493 -2.2729 -1.2239 13 8 2.4664 -1.9797 0.1212 14 6 5.5423 -1.4167 -1.4601 15 6 5.9544 -1.6076 -2.9211 16 6 7.0021 -2.7187 -3.0145 17 6 7.4085 -2.9062 -4.4535 18 1 6.9642 -2.2938 -5.2244 19 6 8.3473 -3.8596 -4.7861 20 7 8.8886 -4.6049 -3.8474 21 14 8.8516 -4.0916 -6.5697 22 1 9.4263 -2.8251 -7.0905 23 1 9.8684 -5.1701 -6.6604 24 1 7.6615 -4.4636 -7.3763 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2128 2.3204 0.0097 29 1 1.3341 4.5114 -0.0023 30 1 3.7923 4.6381 -0.0117 31 1 5.1344 2.5751 -0.0097 32 1 5.2209 0.2187 0.4628 33 1 3.7318 -0.7513 0.5635 34 1 2.4080 -0.2491 -1.8155 35 1 3.3514 -1.1747 -3.0079 36 1 2.0202 -2.7564 -1.7406 37 1 3.7123 -2.9388 -1.2190 38 1 2.2962 -2.7636 0.6615 39 1 6.3971 -1.0610 -0.8849 40 1 5.2001 -2.3677 -1.0519 41 1 5.0806 -1.8813 -3.5124 42 1 6.3755 -0.6780 -3.3042 43 1 7.8759 -2.4448 -2.4233 44 1 6.5810 -3.6482 -2.6315 45 1 9.5495 -5.2754 -4.0814 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103143729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:57 Heat of formation + Delta-G solvation = -73.517354 kcal Electronic energy + Delta-G solvation = -24350.714485 eV Core-core repulsion = 20947.059094 eV Total energy + Delta-G solvation = -3403.655391 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23979 -39.40255 -38.08397 -36.72745 -35.57536 -33.67538 -32.28609 -30.85496 -29.92001 -28.49251 -27.83831 -25.86737 -24.85334 -23.14662 -22.79300 -21.73672 -20.69834 -18.69385 -18.49746 -18.30316 -17.59257 -16.88852 -16.71825 -16.51495 -16.36757 -15.79574 -15.30833 -15.25072 -14.94822 -14.41026 -14.36676 -14.08369 -13.83402 -13.58930 -13.31170 -13.08219 -13.03875 -12.78356 -12.65180 -12.62739 -12.40338 -12.32909 -12.16712 -12.03972 -11.63699 -11.53857 -11.42864 -11.32721 -11.03831 -10.54708 -10.49485 -9.72416 -9.01953 -8.81708 -8.19057 -6.30010 0.48560 0.64692 1.39957 1.43326 1.51224 2.41616 2.58695 2.83101 3.13748 3.29374 3.59982 3.95375 4.00954 4.13642 4.20676 4.27116 4.36618 4.41779 4.47758 4.51355 4.51651 4.58490 4.60825 4.76551 4.78531 4.84446 4.86089 4.93824 5.01457 5.08167 5.12120 5.20317 5.30966 5.37788 5.53262 5.54394 5.65094 5.76449 5.77063 5.87460 6.02584 6.20442 6.30211 6.33470 6.72270 6.86441 7.01811 7.38972 8.92593 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023374 B = 0.003360 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.607432 B = 8332.015274 C = 8909.233312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.281 6.281 3 C 0.123 3.877 4 C -0.223 4.223 5 C -0.088 4.088 6 C -0.170 4.170 7 C -0.083 4.083 8 C -0.121 4.121 9 C 0.082 3.918 10 N -0.533 5.533 11 C 0.055 3.945 12 C 0.049 3.951 13 O -0.540 6.540 14 C 0.063 3.937 15 C -0.086 4.086 16 C 0.029 3.971 17 C -0.543 4.543 18 H 0.057 0.943 19 C 0.000 4.000 20 N -0.933 5.933 21 Si 0.964 3.036 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.266 1.266 25 H 0.107 0.893 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.034 0.966 38 H 0.374 0.626 39 H 0.061 0.939 40 H 0.035 0.965 41 H 0.048 0.952 42 H 0.045 0.955 43 H -0.010 1.010 44 H -0.009 1.009 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.646 12.449 10.676 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.193 6.193 3 C 0.076 3.924 4 C -0.241 4.241 5 C -0.106 4.106 6 C -0.188 4.188 7 C -0.102 4.102 8 C -0.122 4.122 9 C -0.044 4.044 10 N -0.256 5.256 11 C -0.073 4.073 12 C -0.030 4.030 13 O -0.346 6.346 14 C -0.064 4.064 15 C -0.124 4.124 16 C -0.009 4.009 17 C -0.581 4.581 18 H 0.076 0.924 19 C -0.198 4.198 20 N -0.574 5.574 21 Si 0.789 3.211 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.191 1.191 25 H 0.125 0.875 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.222 0.778 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.008 0.992 44 H 0.010 0.990 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.233 13.128 10.217 25.429 hybrid contribution 0.235 -1.555 -0.234 1.590 sum -18.999 11.573 9.984 24.383 Atomic orbital electron populations 1.23158 0.78725 1.04452 1.01143 1.86556 1.21055 1.24318 1.87409 1.19119 0.91941 0.85711 0.95623 1.21479 1.00741 0.92287 1.09625 1.21230 0.94691 0.97713 0.96978 1.21267 0.94416 0.98561 1.04586 1.21091 1.00258 0.91581 0.97221 1.19256 0.91114 0.95554 1.06264 1.21308 0.98268 0.95294 0.89542 1.62209 1.05666 1.37799 1.19974 1.22330 0.92077 0.95254 0.97668 1.22680 0.97944 0.97839 0.84539 1.86710 1.90496 1.35602 1.21783 1.22106 0.93483 0.93716 0.97130 1.21351 0.97942 0.98059 0.95018 1.18944 0.93373 0.93186 0.95376 1.21661 1.23130 1.18863 0.94453 0.92442 1.25973 0.96165 0.95442 1.02183 1.70094 1.29307 1.23156 1.34814 0.85515 0.78206 0.77999 0.79419 1.19283 1.20711 1.19102 0.87500 0.92422 0.92885 0.83946 0.83714 0.84417 0.85688 0.92109 0.88987 0.89387 0.91037 0.92901 0.94838 0.77789 0.92091 0.94689 0.93294 0.93577 0.99208 0.99049 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.28 -6.21 4.26 -68.92 -0.29 -6.50 16 3 C 0.12 2.99 5.63 22.51 0.13 3.11 16 4 C -0.22 -4.48 9.04 22.37 0.20 -4.28 16 5 C -0.09 -1.65 10.04 22.26 0.22 -1.43 16 6 C -0.17 -3.55 10.04 22.28 0.22 -3.32 16 7 C -0.08 -2.08 9.69 22.25 0.22 -1.86 16 8 C -0.12 -3.28 5.14 -19.77 -0.10 -3.39 16 9 C 0.08 2.41 4.84 85.56 0.41 2.82 16 10 N -0.53 -17.35 4.63 -900.78 -4.17 -21.52 16 11 C 0.05 1.62 5.28 86.30 0.46 2.07 16 12 C 0.05 1.26 6.80 71.98 0.49 1.75 16 13 O -0.54 -11.90 7.16 -125.54 -0.90 -12.80 16 14 C 0.06 2.34 4.74 86.30 0.41 2.75 16 15 C -0.09 -3.76 5.25 30.60 0.16 -3.60 16 16 C 0.03 1.57 4.97 29.85 0.15 1.72 16 17 C -0.54 -31.86 9.11 25.60 0.23 -31.63 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 19 C 0.00 0.00 5.46 84.65 0.46 0.46 16 20 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 21 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 26 H 0.06 0.70 7.65 -2.39 -0.02 0.68 16 27 H 0.05 0.69 7.67 -2.39 -0.02 0.68 16 28 H 0.14 2.15 6.30 -2.91 -0.02 2.13 16 29 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 30 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 31 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 32 H 0.06 1.79 7.68 -2.39 -0.02 1.77 16 33 H 0.09 2.71 4.45 -2.38 -0.01 2.70 16 34 H 0.09 2.56 4.83 -2.38 -0.01 2.54 16 35 H 0.07 2.25 6.68 -2.39 -0.02 2.24 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.03 1.00 5.69 -2.38 -0.01 0.98 16 38 H 0.37 5.54 9.12 -74.02 -0.68 4.86 16 39 H 0.06 2.29 7.77 -2.39 -0.02 2.27 16 40 H 0.04 1.30 5.55 -2.39 -0.01 1.29 16 41 H 0.05 2.09 6.57 -2.39 -0.02 2.08 16 42 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 43 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 45 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -69.03 346.92 2.04 -66.99 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.31 Total: 17.62 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: 4.77 Total: -33.41 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -3.88 Total: -78.98 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -1.19 Total: -19.31 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -69.03 2.04 -66.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103143729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.526 kcal (2) G-P(sol) polarization free energy of solvation -69.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds