Wall clock time and date at job start Tue Mar 31 2020 06:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47117 * 2 1 4 4 C 1.42904 * 113.99875 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46983 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47114 * 54.99903 * 5 4 3 7 7 O 1.42897 * 109.47166 * 294.99855 * 5 4 3 8 8 C 1.52997 * 109.47154 * 174.99755 * 5 4 3 9 9 N 1.46896 * 109.47439 * 184.99103 * 8 5 4 10 10 C 1.46902 * 110.99869 * 286.85592 * 9 8 5 11 11 C 1.50701 * 109.47284 * 299.43938 * 10 9 8 12 12 H 1.07998 * 120.00044 * 4.85957 * 11 10 9 13 13 C 1.37871 * 119.99905 * 184.86648 * 11 10 9 14 14 N 1.31514 * 120.00134 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 120.00222 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46956 * 90.00279 * 15 13 11 17 17 H 1.48496 * 109.47224 * 210.00628 * 15 13 11 18 18 H 1.48506 * 109.47039 * 330.00516 * 15 13 11 19 19 C 1.46904 * 110.99965 * 162.90359 * 9 8 5 20 20 C 1.50704 * 109.46739 * 189.99767 * 19 9 8 21 21 C 1.38239 * 119.99875 * 90.00318 * 20 19 9 22 22 C 1.38228 * 120.00068 * 179.97438 * 21 20 19 23 23 C 1.38233 * 120.00129 * 0.07308 * 22 21 20 24 24 C 1.38234 * 119.99904 * 359.90129 * 23 22 21 25 25 C 1.38228 * 120.00238 * 269.97918 * 20 19 9 26 26 H 1.09002 * 109.47246 * 60.00013 * 1 2 3 27 27 H 1.08997 * 109.47221 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46998 * 300.00478 * 1 2 3 29 29 H 1.08999 * 109.47163 * 240.00050 * 2 1 3 30 30 H 1.08997 * 109.46815 * 119.99834 * 2 1 3 31 31 H 1.09000 * 109.47160 * 59.99687 * 4 3 2 32 32 H 1.08999 * 109.46499 * 299.99916 * 4 3 2 33 33 H 0.96703 * 114.00012 * 300.00316 * 7 5 4 34 34 H 1.09001 * 109.47338 * 64.98926 * 8 5 4 35 35 H 1.09005 * 109.47208 * 304.99438 * 8 5 4 36 36 H 1.09001 * 109.46818 * 59.43803 * 10 9 8 37 37 H 1.09001 * 109.46889 * 179.43771 * 10 9 8 38 38 H 0.96995 * 120.00194 * 179.97438 * 14 13 11 39 39 H 1.08993 * 109.47004 * 70.00187 * 19 9 8 40 40 H 1.08993 * 109.47062 * 309.99495 * 19 9 8 41 41 H 1.07999 * 119.99993 * 359.69782 * 21 20 19 42 42 H 1.08002 * 120.00377 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.00389 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.00197 * 180.02562 * 24 23 22 45 45 H 1.08004 * 120.00098 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 1 3.3499 3.4416 0.8407 7 8 3.3977 3.5450 -1.2222 8 6 5.3454 3.0606 0.1240 9 7 5.7145 4.4774 0.2436 10 6 5.5639 5.1710 -1.0425 11 6 6.4670 4.5328 -2.0663 12 1 7.0314 3.6479 -1.8117 13 6 6.5729 5.0788 -3.3279 14 7 7.3607 4.5216 -4.2215 15 14 5.5964 6.6091 -3.7685 16 1 6.3986 7.8172 -3.4489 17 1 5.2806 6.5941 -5.2194 18 1 4.3337 6.6325 -2.9872 19 6 7.0806 4.6234 0.7636 20 6 7.3368 6.0690 1.1037 21 6 7.0516 6.5419 2.3710 22 6 7.2870 7.8677 2.6832 23 6 7.8062 8.7211 1.7277 24 6 8.0919 8.2482 0.4606 25 6 7.8573 6.9220 0.1487 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9766 -0.8908 32 1 3.8340 0.9764 0.8892 33 1 3.7822 3.1467 -2.0151 34 1 5.8182 2.6354 -0.7613 35 1 5.6816 2.5215 1.0097 36 1 4.5285 5.0981 -1.3756 37 1 5.8341 6.2202 -0.9233 38 1 7.4349 4.9054 -5.1092 39 1 7.7941 4.2961 0.0074 40 1 7.1954 4.0135 1.6596 41 1 6.6407 5.8765 3.1159 42 1 7.0638 8.2374 3.6731 43 1 7.9897 9.7571 1.9714 44 1 8.4979 8.9148 -0.2859 45 1 8.0809 6.5524 -0.8412 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107346283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:03 Heat of formation + Delta-G solvation = -67.232656 kcal Electronic energy + Delta-G solvation = -24156.699241 eV Core-core repulsion = 20753.316375 eV Total energy + Delta-G solvation = -3403.382866 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.07637 -38.38130 -37.09814 -35.19080 -32.47481 -31.64883 -31.12270 -30.42239 -29.47654 -27.46274 -25.53194 -23.68560 -22.77230 -22.08899 -21.77829 -20.68601 -19.56177 -17.16574 -16.66951 -16.29314 -16.14551 -15.75999 -15.12354 -14.95886 -14.59739 -14.53096 -14.17220 -13.76772 -13.60758 -13.00612 -12.90678 -12.79141 -12.52241 -12.39424 -12.19971 -11.94227 -11.55124 -11.39248 -11.32115 -11.23366 -11.02705 -10.94774 -10.49013 -10.40266 -10.34710 -10.23195 -9.88565 -9.54149 -9.50973 -9.06327 -8.54862 -8.37422 -8.25478 -7.15744 -6.11178 -4.09070 1.83377 1.89933 3.30634 3.39330 3.49529 3.66743 4.24810 4.42962 4.91129 4.95518 5.01220 5.16764 5.24979 5.30403 5.31687 5.34238 5.38976 5.45958 5.50488 5.54888 5.62754 5.67637 5.79122 5.83966 5.89593 5.95877 6.03463 6.04218 6.16387 6.22509 6.36221 6.55468 6.64279 6.70867 6.89749 6.99608 7.05665 7.25008 7.29728 7.41435 7.51804 7.63239 8.07390 8.11725 8.35080 8.44221 8.90677 9.53909 11.01072 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012693 B = 0.004991 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.446544 B = 5608.530331 C = 7115.078006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.378 6.378 4 C 0.032 3.968 5 C 0.123 3.877 6 H 0.101 0.899 7 O -0.542 6.542 8 C 0.028 3.972 9 N -0.520 5.520 10 C 0.131 3.869 11 C -0.545 4.545 12 H 0.071 0.929 13 C 0.076 3.924 14 N -0.901 5.901 15 Si 0.869 3.131 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.258 1.258 19 C 0.092 3.908 20 C -0.058 4.058 21 C -0.108 4.108 22 C -0.133 4.133 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.097 4.097 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.377 0.623 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.703 -3.573 11.075 12.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.297 6.297 4 C -0.045 4.045 5 C 0.063 3.937 6 H 0.119 0.881 7 O -0.348 6.348 8 C -0.101 4.101 9 N -0.243 5.243 10 C 0.005 3.995 11 C -0.584 4.584 12 H 0.089 0.911 13 C -0.126 4.126 14 N -0.540 5.540 15 Si 0.696 3.304 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.183 1.183 19 C -0.036 4.036 20 C -0.058 4.058 21 C -0.127 4.127 22 C -0.151 4.151 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.115 4.115 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.225 0.775 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.435 -2.816 11.635 13.147 hybrid contribution 0.760 -0.186 -1.385 1.591 sum -4.675 -3.003 10.251 11.659 Atomic orbital electron populations 1.21725 0.93987 1.01832 1.03200 1.22435 0.95503 0.84525 0.99706 1.87970 1.20981 1.25472 1.95319 1.23313 0.81465 0.99336 1.00405 1.21759 0.93657 0.89229 0.89033 0.88092 1.86563 1.72107 1.60833 1.15295 1.22557 0.94918 0.91448 1.01169 1.62443 1.21595 1.10410 1.29882 1.20700 0.99579 0.94196 0.85052 1.21635 1.26547 1.13661 0.96534 0.91122 1.24866 0.94653 0.96807 0.96302 1.69924 1.38151 1.40729 1.05165 0.86927 0.81955 0.83920 0.77588 1.20331 1.21596 1.18258 1.20971 0.92134 0.91695 0.98782 1.19822 0.96738 0.96150 0.93113 1.20975 0.99731 0.95408 0.96540 1.20992 1.01100 0.94032 0.98969 1.21008 1.00911 0.99089 0.93960 1.21137 1.01101 0.96010 0.96478 1.21413 0.97050 0.93151 0.99917 0.91768 0.91445 0.91963 0.93637 0.93838 0.93039 0.93023 0.77500 0.92179 0.92143 0.91495 0.95771 0.92800 0.92406 0.92185 0.86610 0.86904 0.86999 0.86727 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 37.16 0.38 -1.09 16 2 C 0.06 0.63 6.66 37.16 0.25 0.88 16 3 O -0.38 -5.70 10.31 -40.09 -0.41 -6.12 16 4 C 0.03 0.46 5.57 37.16 0.21 0.66 16 5 C 0.12 2.06 3.46 -26.73 -0.09 1.97 16 6 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 7 O -0.54 -10.54 10.21 -40.09 -0.41 -10.95 16 8 C 0.03 0.49 4.62 -3.83 -0.02 0.47 16 9 N -0.52 -10.29 4.65 -237.52 -1.10 -11.40 16 10 C 0.13 3.02 3.49 -4.97 -0.02 3.00 16 11 C -0.55 -13.97 7.71 -34.44 -0.27 -14.23 16 12 H 0.07 1.96 6.21 -52.49 -0.33 1.64 16 13 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 14 N -0.90 -26.23 13.96 55.43 0.77 -25.45 16 15 Si 0.87 21.30 27.38 -169.99 -4.65 16.64 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.26 -6.32 6.68 56.52 0.38 -5.94 16 19 C 0.09 1.71 4.94 -4.97 -0.02 1.68 16 20 C -0.06 -1.06 4.89 -104.62 -0.51 -1.57 16 21 C -0.11 -1.73 9.70 -39.58 -0.38 -2.12 16 22 C -0.13 -1.95 10.05 -39.59 -0.40 -2.35 16 23 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 24 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 25 C -0.10 -1.86 7.91 -39.59 -0.31 -2.17 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.38 6.97 9.05 45.56 0.41 7.38 16 34 H 0.06 1.17 6.10 -51.93 -0.32 0.85 16 35 H 0.06 0.91 7.79 -51.93 -0.40 0.50 16 36 H 0.07 1.64 4.66 -51.93 -0.24 1.40 16 37 H 0.02 0.59 5.09 -51.93 -0.26 0.33 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.06 1.21 6.57 -51.93 -0.34 0.87 16 40 H 0.06 0.97 7.79 -51.93 -0.40 0.56 16 41 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 42 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 44 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 45 H 0.13 2.88 7.82 -52.48 -0.41 2.47 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -29.94 358.99 -9.01 -38.95 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.53 Total: 10.75 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.08 Total: -17.83 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.33 Total: -36.85 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.82 Total: -17.07 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.65 Total: 16.64 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.94 -9.01 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107346283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.283 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds