Wall clock time and date at job start Tue Mar 31 2020 06:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47117 * 2 1 4 4 C 1.42904 * 113.99875 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46983 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47114 * 54.99903 * 5 4 3 7 7 O 1.42897 * 109.47166 * 294.99855 * 5 4 3 8 8 C 1.52997 * 109.47154 * 174.99755 * 5 4 3 9 9 N 1.46896 * 109.47439 * 184.99103 * 8 5 4 10 10 C 1.46902 * 110.99869 * 286.85592 * 9 8 5 11 11 C 1.50701 * 109.47284 * 299.43938 * 10 9 8 12 12 H 1.07998 * 120.00044 * 4.85957 * 11 10 9 13 13 C 1.37871 * 119.99905 * 184.86648 * 11 10 9 14 14 N 1.31514 * 120.00134 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 120.00222 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46956 * 90.00279 * 15 13 11 17 17 H 1.48496 * 109.47224 * 210.00628 * 15 13 11 18 18 H 1.48506 * 109.47039 * 330.00516 * 15 13 11 19 19 C 1.46904 * 110.99965 * 162.90359 * 9 8 5 20 20 C 1.50704 * 109.46739 * 189.99767 * 19 9 8 21 21 C 1.38239 * 119.99875 * 90.00318 * 20 19 9 22 22 C 1.38228 * 120.00068 * 179.97438 * 21 20 19 23 23 C 1.38233 * 120.00129 * 0.07308 * 22 21 20 24 24 C 1.38234 * 119.99904 * 359.90129 * 23 22 21 25 25 C 1.38228 * 120.00238 * 269.97918 * 20 19 9 26 26 H 1.09002 * 109.47246 * 60.00013 * 1 2 3 27 27 H 1.08997 * 109.47221 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46998 * 300.00478 * 1 2 3 29 29 H 1.08999 * 109.47163 * 240.00050 * 2 1 3 30 30 H 1.08997 * 109.46815 * 119.99834 * 2 1 3 31 31 H 1.09000 * 109.47160 * 59.99687 * 4 3 2 32 32 H 1.08999 * 109.46499 * 299.99916 * 4 3 2 33 33 H 0.96703 * 114.00012 * 300.00316 * 7 5 4 34 34 H 1.09001 * 109.47338 * 64.98926 * 8 5 4 35 35 H 1.09005 * 109.47208 * 304.99438 * 8 5 4 36 36 H 1.09001 * 109.46818 * 59.43803 * 10 9 8 37 37 H 1.09001 * 109.46889 * 179.43771 * 10 9 8 38 38 H 0.96995 * 120.00194 * 179.97438 * 14 13 11 39 39 H 1.08993 * 109.47004 * 70.00187 * 19 9 8 40 40 H 1.08993 * 109.47062 * 309.99495 * 19 9 8 41 41 H 1.07999 * 119.99993 * 359.69782 * 21 20 19 42 42 H 1.08002 * 120.00377 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.00389 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.00197 * 180.02562 * 24 23 22 45 45 H 1.08004 * 120.00098 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 1 3.3499 3.4416 0.8407 7 8 3.3977 3.5450 -1.2222 8 6 5.3454 3.0606 0.1240 9 7 5.7145 4.4774 0.2436 10 6 5.5639 5.1710 -1.0425 11 6 6.4670 4.5328 -2.0663 12 1 7.0314 3.6479 -1.8117 13 6 6.5729 5.0788 -3.3279 14 7 7.3607 4.5216 -4.2215 15 14 5.5964 6.6091 -3.7685 16 1 6.3986 7.8172 -3.4489 17 1 5.2806 6.5941 -5.2194 18 1 4.3337 6.6325 -2.9872 19 6 7.0806 4.6234 0.7636 20 6 7.3368 6.0690 1.1037 21 6 7.0516 6.5419 2.3710 22 6 7.2870 7.8677 2.6832 23 6 7.8062 8.7211 1.7277 24 6 8.0919 8.2482 0.4606 25 6 7.8573 6.9220 0.1487 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9766 -0.8908 32 1 3.8340 0.9764 0.8892 33 1 3.7822 3.1467 -2.0151 34 1 5.8182 2.6354 -0.7613 35 1 5.6816 2.5215 1.0097 36 1 4.5285 5.0981 -1.3756 37 1 5.8341 6.2202 -0.9233 38 1 7.4349 4.9054 -5.1092 39 1 7.7941 4.2961 0.0074 40 1 7.1954 4.0135 1.6596 41 1 6.6407 5.8765 3.1159 42 1 7.0638 8.2374 3.6731 43 1 7.9897 9.7571 1.9714 44 1 8.4979 8.9148 -0.2859 45 1 8.0809 6.5524 -0.8412 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107346283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:02 Heat of formation + Delta-G solvation = -87.972786 kcal Electronic energy + Delta-G solvation = -24157.598600 eV Core-core repulsion = 20753.316375 eV Total energy + Delta-G solvation = -3404.282225 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.46277 -39.60675 -38.39190 -36.67931 -34.53403 -32.80081 -32.33362 -31.70383 -30.89014 -29.20286 -26.85259 -25.39900 -23.65368 -23.40835 -23.18495 -22.04841 -21.19967 -19.12144 -17.90106 -17.50401 -17.41260 -16.97300 -16.64279 -16.41490 -16.13124 -15.87716 -15.81523 -15.16926 -14.98536 -14.37394 -14.24124 -14.15005 -13.92879 -13.65267 -13.42489 -13.30113 -13.10508 -12.87400 -12.82595 -12.66228 -12.28243 -12.21484 -12.11544 -11.87714 -11.79186 -11.68791 -11.62657 -11.49778 -10.82564 -10.56574 -10.39780 -9.68840 -9.57429 -8.85253 -8.26874 -6.25405 0.55494 0.61230 1.31660 1.36064 1.48982 2.35904 2.58364 2.97118 3.11389 3.56086 3.63130 4.03433 4.07828 4.15123 4.16488 4.21235 4.26312 4.32611 4.37894 4.40002 4.49786 4.51381 4.53405 4.61362 4.73779 4.79807 4.83385 4.88651 4.96093 5.04377 5.18547 5.24344 5.25662 5.28129 5.29521 5.49885 5.60543 5.67290 5.71577 5.91307 6.17928 6.24218 6.28417 6.40834 6.49447 6.79777 6.89205 7.39994 8.88533 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012693 B = 0.004991 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.446544 B = 5608.530331 C = 7115.078006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.405 6.405 4 C 0.040 3.960 5 C 0.125 3.875 6 H 0.098 0.902 7 O -0.563 6.563 8 C 0.032 3.968 9 N -0.518 5.518 10 C 0.147 3.853 11 C -0.520 4.520 12 H 0.042 0.958 13 C 0.027 3.973 14 N -0.945 5.945 15 Si 0.923 3.077 16 H -0.275 1.275 17 H -0.288 1.288 18 H -0.255 1.255 19 C 0.096 3.904 20 C -0.078 4.078 21 C -0.109 4.109 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.141 4.141 25 C -0.126 4.126 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.376 0.624 34 H 0.035 0.965 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.013 0.987 38 H 0.262 0.738 39 H 0.023 0.977 40 H 0.090 0.910 41 H 0.139 0.861 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.123 0.877 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.859 -3.035 13.987 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.325 6.325 4 C -0.037 4.037 5 C 0.065 3.935 6 H 0.116 0.884 7 O -0.369 6.369 8 C -0.097 4.097 9 N -0.241 5.241 10 C 0.020 3.980 11 C -0.559 4.559 12 H 0.060 0.940 13 C -0.171 4.171 14 N -0.586 5.586 15 Si 0.749 3.251 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.179 1.179 19 C -0.032 4.032 20 C -0.078 4.078 21 C -0.127 4.127 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.159 4.159 25 C -0.145 4.145 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.224 0.776 34 H 0.053 0.947 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.109 0.891 41 H 0.156 0.844 42 H 0.169 0.831 43 H 0.164 0.836 44 H 0.141 0.859 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.600 -2.287 14.569 16.157 hybrid contribution 1.151 -0.397 -2.169 2.487 sum -5.449 -2.685 12.400 13.808 Atomic orbital electron populations 1.21755 0.92935 1.03336 1.02521 1.22690 0.96432 0.83040 1.00776 1.87928 1.21146 1.27862 1.95545 1.23152 0.81602 0.97290 1.01646 1.21804 0.92799 0.91073 0.87790 0.88387 1.86519 1.72444 1.61805 1.16181 1.22596 0.95485 0.90120 1.01491 1.62432 1.22421 1.11670 1.27553 1.20398 0.98022 0.93683 0.85918 1.21737 1.25341 1.12047 0.96802 0.94028 1.25505 0.95728 0.99332 0.96546 1.70038 1.40355 1.42532 1.05655 0.86063 0.80764 0.81063 0.77214 1.20065 1.21430 1.17887 1.20972 0.90369 0.93019 0.98791 1.19853 0.98041 0.95658 0.94287 1.21239 0.99166 0.96674 0.95657 1.21455 0.99158 0.93195 1.00466 1.21403 0.99385 1.00848 0.92757 1.21324 1.01385 0.95094 0.98094 1.21225 0.99686 0.94850 0.98735 0.92911 0.88864 0.92154 0.93213 0.92041 0.93043 0.90430 0.77555 0.94713 0.88911 0.92307 0.96913 0.92908 0.95919 0.89143 0.84364 0.83090 0.83599 0.85922 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 10.28 71.98 0.74 -1.91 16 2 C 0.05 0.98 6.66 71.98 0.48 1.46 16 3 O -0.40 -11.68 10.31 -144.34 -1.49 -13.16 16 4 C 0.04 1.08 5.57 71.98 0.40 1.48 16 5 C 0.12 4.08 3.46 30.59 0.11 4.19 16 6 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 7 O -0.56 -22.12 10.21 -144.34 -1.47 -23.60 16 8 C 0.03 1.09 4.62 86.30 0.40 1.49 16 9 N -0.52 -20.47 4.65 -905.36 -4.21 -24.68 16 10 C 0.15 6.93 3.49 85.56 0.30 7.23 16 11 C -0.52 -27.87 7.71 25.60 0.20 -27.68 16 12 H 0.04 2.45 6.21 -2.91 -0.02 2.43 16 13 C 0.03 1.52 5.47 84.65 0.46 1.98 16 14 N -0.94 -57.28 13.96 21.45 0.30 -56.98 16 15 Si 0.92 45.23 27.38 68.60 1.88 47.10 16 16 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 17 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 18 H -0.25 -12.25 6.68 99.48 0.66 -11.59 16 19 C 0.10 3.58 4.94 85.56 0.42 4.00 16 20 C -0.08 -2.82 4.89 -19.87 -0.10 -2.92 16 21 C -0.11 -3.19 9.70 22.27 0.22 -2.97 16 22 C -0.13 -3.16 10.05 22.27 0.22 -2.94 16 23 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 24 C -0.14 -4.66 10.05 22.27 0.22 -4.44 16 25 C -0.13 -4.98 7.91 22.27 0.18 -4.80 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 33 H 0.38 14.40 9.05 -74.06 -0.67 13.73 16 34 H 0.03 1.39 6.10 -2.39 -0.01 1.37 16 35 H 0.09 2.58 7.79 -2.38 -0.02 2.56 16 36 H 0.06 2.92 4.66 -2.39 -0.01 2.91 16 37 H 0.01 0.64 5.09 -2.39 -0.01 0.63 16 38 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.02 1.00 6.57 -2.39 -0.02 0.98 16 40 H 0.09 2.77 7.79 -2.39 -0.02 2.75 16 41 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 42 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 44 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 45 H 0.09 4.35 7.82 -2.91 -0.02 4.33 16 Total: -1.00 -67.22 358.99 -0.26 -67.49 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: 0.26 Total: 32.79 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 4.47 Total: -28.95 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -3.91 Total: -81.66 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -2.96 Total: -36.76 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.10 kcal Total: -67.22 -0.26 -67.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107346283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.487 kcal (2) G-P(sol) polarization free energy of solvation -67.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds