Wall clock time and date at job start Tue Mar 31 2020 06:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.47502 * 2 1 4 4 C 1.42894 * 114.00330 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47426 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46911 * 304.99985 * 5 4 3 7 7 O 1.42900 * 109.47122 * 64.99522 * 5 4 3 8 8 C 1.52998 * 109.47167 * 184.99704 * 5 4 3 9 9 N 1.46897 * 109.47040 * 178.33263 * 8 5 4 10 10 C 1.46901 * 110.99890 * 288.56515 * 9 8 5 11 11 C 1.50694 * 109.47508 * 299.96521 * 10 9 8 12 12 H 1.08001 * 119.99866 * 4.21426 * 11 10 9 13 13 C 1.37881 * 120.00407 * 184.22360 * 11 10 9 14 14 N 1.31517 * 119.99361 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00235 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47099 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47105 * 119.99360 * 15 13 11 18 18 H 1.48501 * 109.46892 * 239.99559 * 15 13 11 19 19 C 1.46900 * 111.00046 * 164.61548 * 9 8 5 20 20 C 1.50704 * 109.47116 * 190.00232 * 19 9 8 21 21 C 1.38231 * 120.00185 * 89.99748 * 20 19 9 22 22 C 1.38235 * 120.00026 * 179.97438 * 21 20 19 23 23 C 1.38233 * 120.00081 * 0.06385 * 22 21 20 24 24 C 1.38230 * 119.99904 * 359.91643 * 23 22 21 25 25 C 1.38234 * 119.99583 * 269.97706 * 20 19 9 26 26 H 1.09005 * 109.46561 * 60.00172 * 1 2 3 27 27 H 1.09000 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47128 * 300.00627 * 1 2 3 29 29 H 1.09001 * 109.47128 * 239.99373 * 2 1 3 30 30 H 1.09005 * 109.46561 * 119.99828 * 2 1 3 31 31 H 1.08998 * 109.47576 * 59.99202 * 4 3 2 32 32 H 1.09009 * 109.46761 * 300.00146 * 4 3 2 33 33 H 0.96703 * 113.99706 * 60.00371 * 7 5 4 34 34 H 1.09003 * 109.47278 * 58.33407 * 8 5 4 35 35 H 1.08994 * 109.47303 * 298.33188 * 8 5 4 36 36 H 1.09002 * 109.47233 * 59.96735 * 10 9 8 37 37 H 1.09006 * 109.47234 * 179.97438 * 10 9 8 38 38 H 0.97006 * 119.99385 * 179.97438 * 14 13 11 39 39 H 1.08997 * 109.47384 * 69.99941 * 19 9 8 40 40 H 1.09004 * 109.46638 * 309.99371 * 19 9 8 41 41 H 1.08002 * 120.00203 * 359.69727 * 21 20 19 42 42 H 1.07999 * 120.00159 * 179.97438 * 22 21 20 43 43 H 1.08001 * 120.00395 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.00442 * 180.02562 * 24 23 22 45 45 H 1.07992 * 120.00267 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 1 3.3500 3.4415 -0.8407 7 8 3.3977 3.5450 1.2222 8 6 5.3455 3.0604 -0.1238 9 7 5.7210 4.4801 -0.1634 10 6 5.3290 5.0929 -1.4397 11 6 6.0200 4.3793 -2.5729 12 1 6.6300 3.5109 -2.3722 13 6 5.8737 4.8349 -3.8660 14 7 5.1305 5.8922 -4.1103 15 14 6.7297 3.9499 -5.2707 16 1 7.4991 2.7984 -4.7346 17 1 5.7154 3.4604 -6.2386 18 1 7.6555 4.8876 -5.9555 19 6 7.1590 4.6513 0.0830 20 6 7.4644 6.1140 0.2789 21 6 7.4169 6.6664 1.5452 22 6 7.6976 8.0080 1.7250 23 6 8.0244 8.7975 0.6383 24 6 8.0722 8.2450 -0.6279 25 6 7.7924 6.9031 -0.8076 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8342 0.9763 -0.8890 32 1 3.8333 0.9766 0.8909 33 1 3.7822 3.1467 2.0151 34 1 5.6751 2.5717 -1.0407 35 1 5.8201 2.5829 0.7333 36 1 4.2491 5.0129 -1.5646 37 1 5.6183 6.1438 -1.4421 38 1 5.0279 6.2130 -5.0200 39 1 7.7215 4.2739 -0.7710 40 1 7.4426 4.0979 0.9782 41 1 7.1562 6.0509 2.3935 42 1 7.6601 8.4397 2.7142 43 1 8.2440 9.8455 0.7788 44 1 8.3280 8.8616 -1.4769 45 1 7.8302 6.4714 -1.7967 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107346285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:04 Heat of formation + Delta-G solvation = -72.787987 kcal Electronic energy + Delta-G solvation = -23987.333783 eV Core-core repulsion = 20583.710020 eV Total energy + Delta-G solvation = -3403.623763 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.96421 -38.32356 -36.96423 -35.38631 -32.53778 -31.64590 -31.08003 -30.30876 -29.13503 -27.08528 -25.46743 -23.93178 -22.73731 -22.13895 -21.87948 -20.56661 -19.63359 -16.94380 -16.41676 -16.31594 -15.99738 -15.77224 -15.19439 -14.78315 -14.61373 -14.42451 -14.31092 -13.83487 -13.42435 -13.06053 -12.86121 -12.71886 -12.55931 -12.32952 -12.15096 -11.91915 -11.34170 -11.30933 -11.23718 -11.10437 -11.01874 -10.80749 -10.60243 -10.44255 -10.33810 -10.03254 -9.94525 -9.60781 -9.50687 -9.37838 -8.47925 -8.28263 -8.14631 -7.13965 -6.04633 -4.14816 1.93199 2.00780 3.22041 3.31390 3.32386 3.71203 4.34233 4.36058 4.89118 5.00564 5.05514 5.22261 5.24449 5.34014 5.35403 5.39824 5.42924 5.52625 5.56204 5.58172 5.71679 5.73302 5.78717 5.88555 5.91969 5.98885 6.08731 6.11073 6.25801 6.36291 6.46804 6.62230 6.68362 6.72072 6.99179 7.10654 7.24105 7.34428 7.35896 7.54704 7.61895 7.91540 8.00458 8.21003 8.24307 8.30957 8.96460 9.51433 10.99383 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.005101 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.290751 B = 5487.816765 C = 7431.714303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.034 3.966 5 C 0.119 3.881 6 H 0.112 0.888 7 O -0.540 6.540 8 C 0.033 3.967 9 N -0.523 5.523 10 C 0.180 3.820 11 C -0.551 4.551 12 H 0.056 0.944 13 C 0.069 3.931 14 N -0.884 5.884 15 Si 0.882 3.118 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.097 3.903 20 C -0.059 4.059 21 C -0.107 4.107 22 C -0.134 4.134 23 C -0.131 4.131 24 C -0.127 4.127 25 C -0.090 4.090 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.359 0.641 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.029 0.971 37 H 0.044 0.956 38 H 0.262 0.738 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 -6.205 10.062 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.296 6.296 4 C -0.044 4.044 5 C 0.059 3.941 6 H 0.130 0.870 7 O -0.343 6.343 8 C -0.096 4.096 9 N -0.246 5.246 10 C 0.055 3.945 11 C -0.590 4.590 12 H 0.074 0.926 13 C -0.135 4.135 14 N -0.522 5.522 15 Si 0.710 3.290 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.031 4.031 20 C -0.060 4.060 21 C -0.125 4.125 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.145 4.145 25 C -0.108 4.108 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.204 0.796 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.050 -5.313 9.873 11.212 hybrid contribution 1.349 -1.504 -1.384 2.448 sum 1.399 -6.817 8.489 10.977 Atomic orbital electron populations 1.21728 0.93963 1.01796 1.03283 1.22434 0.95561 0.84560 0.99610 1.87988 1.20917 1.25411 1.95286 1.23294 0.81576 0.99291 1.00206 1.21898 0.94033 0.89421 0.88723 0.86983 1.86680 1.71598 1.61324 1.14711 1.22501 0.94591 0.91924 1.00628 1.62481 1.13061 1.11974 1.37132 1.19891 0.96282 0.95872 0.82463 1.21722 1.30921 1.13597 0.92723 0.92618 1.24922 0.95099 0.94817 0.98619 1.69967 1.38375 1.23346 1.20473 0.86703 0.79581 0.79848 0.82873 1.19945 1.20971 1.20927 1.20895 0.90814 0.91692 0.99667 1.19787 0.97297 0.96091 0.92812 1.20942 0.99809 0.94919 0.96855 1.20971 1.01798 0.94257 0.98225 1.20997 1.01734 0.99083 0.93154 1.21106 1.01118 0.95550 0.96752 1.21355 0.96427 0.93508 0.99510 0.91759 0.91471 0.91874 0.93690 0.93891 0.92536 0.93703 0.79596 0.92424 0.92840 0.95293 0.93785 0.92836 0.93088 0.92425 0.86734 0.87012 0.87099 0.86771 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 37.16 0.38 -1.19 16 2 C 0.06 0.67 6.66 37.16 0.25 0.91 16 3 O -0.38 -6.04 10.31 -40.09 -0.41 -6.45 16 4 C 0.03 0.50 5.57 37.16 0.21 0.71 16 5 C 0.12 2.12 3.25 -26.73 -0.09 2.03 16 6 H 0.11 2.43 6.68 -51.93 -0.35 2.08 16 7 O -0.54 -9.64 13.20 -40.09 -0.53 -10.17 16 8 C 0.03 0.58 4.45 -3.83 -0.02 0.57 16 9 N -0.52 -10.76 4.56 -237.52 -1.08 -11.85 16 10 C 0.18 4.49 4.61 -4.98 -0.02 4.47 16 11 C -0.55 -14.20 7.24 -34.44 -0.25 -14.45 16 12 H 0.06 1.42 5.94 -52.49 -0.31 1.11 16 13 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 14 N -0.88 -25.25 13.29 55.43 0.74 -24.52 16 15 Si 0.88 20.68 29.54 -169.99 -5.02 15.66 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.10 1.83 4.94 -4.97 -0.02 1.80 16 20 C -0.06 -1.12 4.89 -104.62 -0.51 -1.63 16 21 C -0.11 -1.78 9.70 -39.58 -0.38 -2.16 16 22 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 23 C -0.13 -2.05 10.05 -39.59 -0.40 -2.45 16 24 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 25 C -0.09 -1.76 7.91 -39.58 -0.31 -2.08 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.36 4.84 9.05 45.56 0.41 5.26 16 34 H 0.06 1.13 6.10 -51.93 -0.32 0.81 16 35 H 0.05 0.81 7.82 -51.93 -0.41 0.40 16 36 H 0.03 0.80 6.65 -51.93 -0.35 0.46 16 37 H 0.04 1.20 5.89 -51.93 -0.31 0.89 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.05 1.04 6.59 -51.93 -0.34 0.69 16 40 H 0.06 0.94 7.81 -51.93 -0.41 0.53 16 41 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 45 H 0.13 2.90 7.87 -52.49 -0.41 2.49 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -30.19 365.23 -9.44 -39.62 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.57 Total: 8.98 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -2.06 Total: -16.79 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.35 Total: -36.36 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.94 Total: -16.62 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.19 -9.44 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107346285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.163 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds